RNA id: XM_021602226.2



Basic Information


Item Value
RNA id XM_021602226.2
length 1407
RNA type mRNA
GC content 0.49
exon number 6
gene id aqp3b
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25419705 ~ 25424226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTAACAGAAAATGAAGAGGAAAAAAGATATGGGTGGAGATGTGGAGGTAGGCGTTCAGAATCAAGGAGAGACATATTTTCTTTTTTAAAATCTCAACGAGGGAGGGATCCCTCTCTGAGTGCTTAAAGAGTCGACACACGGTCCTCCTTGACACACATTCCAAGTCAGCCCCACATCTCCACAACTGACCCTGTTTTCACTGGACGACCCACAGCTGCATCATGGGAAAACAGAAGGCGCTTATGGACAAGCTCGCAAGGACCTTTCAGGTCCGTCACATGCTGCTACGCCAGGCTCTGGCAGAGTGCCTGGGAACCCTGATACTGGTGATGTTTGGCTGTGGTGCGGTGGCCCAGCTGGTGCTAAGTGGTGGCTCCCATGGAATGTTCCTTACCGTCAACTTTGCCTTTGGCTTCGCAGCTACACTGGGCATCCTGGTCAGCGGACAGATCTCAGGAGGCCACCTGAACCCAACGGTGACCTTCGCCCTCTGTCTATTGGGGAGAGAACCTTGGAGGAAATTCCCTGTGTTTTTCTTGTTCCAGACTATAGGGGCTTTCCTGGGAGCTGGGATCATATTTGGCATGTATTTTGATGCGTTGTGGGACTACGGCCAAGGAACACTGATCGTTGTGGGGGAGAATTCCACTGCTGGGATCTTTGCCACATATCCCTCCAAACATCTCACTCTGGTTAATGGATTCTTTGACCAGATTATAGGCACAGCAGCTCTGATCGTGTGTATCCTGGCCATCGTGGACCCCTACAACAACCCCATCCCCCGGGGCCTGGAGGCCTTCACGGTGGGGTTTGTGGTGCTGGTCATCGGCCTGTCAATGGGCTTCAACTCGGGCTACGCTGTCAACCCTGCCAGGGACCTGGGCCCACGCATCTTTACTGCCCTGGCTGGCTGGGGTGGTGAGGTCTTCACGGCTAATGCCTACTGGTTCTTTGTGCCAATCTTTGCCCCCTTCATTGGTGCAGTGTTGGGGGTGATGGTGTACCAGCTGATGGTGGGGTACCATGTGGAGGGAGAAGCAcgagagaagaaggaagaggaggagaaggaggagcaaGATGAAAGGCTCAAATTGTCCAGCCTAACTACCAAGGACAGTGCATGAGTTCATGAATATTTTACCGTGACCCATTTTAAACACTCTTTATGTAaataatatatatgtgtgtgtagtacactcttagaaaaaatggttatttgactgtccccataggataacccttttgggttctacatggaacccaaaagggttcttccaaaggttctcctatggggacaacaactttcttttctaagagtgtatcttTTTATAGATTTTATATCTTGCCTTGATTACAAACACATTTCCTTGTGGGTATTATTAAAGTATAActtctcaatcaatcaa

Function


GO:

id name namespace
GO:0015793 glycerol transport biological_process
GO:0034219 carbohydrate transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0071918 urea transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015168 glycerol transmembrane transporter activity molecular_function
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0015105 arsenite transmembrane transporter activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
K09876 AQP3; aquaporin-3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU434477 lncRNA upstream 81370 25338105 ~ 25338335 (+) True G382341
TU434476 lncRNA upstream 82818 25336547 ~ 25336887 (+) True G382340
TU434451 lncRNA upstream 107879 25311339 ~ 25311826 (+) True G382315
TU434447 lncRNA upstream 109425 25307974 ~ 25310280 (+) True G382311
TU434443 lncRNA upstream 114195 25305293 ~ 25305510 (+) True G382307
TU434623 lncRNA downstream 11312 25435538 ~ 25435807 (+) True G382476
TU434625 lncRNA downstream 18533 25442759 ~ 25449570 (+) True G382478
TU434647 lncRNA downstream 28646 25452872 ~ 25453094 (+) True G382497
TU434654 lncRNA downstream 33034 25457260 ~ 25457661 (+) True G382504
TU434663 lncRNA downstream 111554 25535780 ~ 25540245 (+) True LOC110523494
trnaa-ugc-10 mRNA upstream 700274 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 714919 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 775693 24635703 ~ 24644012 (+) True LOC110523483
XM_021602200.2 mRNA upstream 946100 24454072 ~ 24473605 (+) False LOC110523479
XM_021602232.2 mRNA downstream 49687 25473913 ~ 25482789 (+) True LOC110523493
XM_036977129.1 mRNA downstream 104683 25528909 ~ 25561013 (+) False LOC110523494
XM_036977139.1 mRNA downstream 104702 25528928 ~ 25561013 (+) False LOC110523494
XM_036977121.1 mRNA downstream 104743 25528969 ~ 25561013 (+) False LOC110523494
XM_036977123.1 mRNA downstream 104743 25528969 ~ 25561013 (+) False LOC110523494
TU434321 other upstream 193975 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 643276 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1575360 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1575859 23838524 ~ 23843846 (+) True LOC110523468
TU432379 other upstream 1575994 23838524 ~ 23843711 (+) False LOC110523468
TU434985 other downstream 750719 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 1013393 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 1013433 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1237612 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 2251126 27675352 ~ 27683393 (+) True LOC110522888

Expression Profile