RNA id: XM_036977129.1


Basic Information

Item Value
RNA id XM_036977129.1
length 5587
RNA type mRNA
GC content 0.52
exon number 27
gene id LOC110523494
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25528909 ~ 25561013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGCACGTCAGGGAAACGAATGTGATGACGTATATAGTAAAGTGGGCGGAGACTGTTTAGGCAAAAAGAGCCATGGCTTCCGTGCAAGCCGAGCCCACAGGTCTGGCCAAAGGCAGAGTGGTTAAAGGGGAGTCcatggaggatgggatggagtcACCTGGGGACCGAGCGGAGGAGGGAGATGCATCAAGAGACGAGGAGGTAGCTGCCAGACTGCAGTCCAGTCCCAGAGCAGAGGCGGAGCAAAATGGGACCTATGAGAGTGCAGAGTTGGGGAACAGACACAAGAACCCCACCCCCCTGGTCTCCCAGGCCAACGGGTCACAGGCGGCTACAGAGAATGGGATGATGGAGACGGACCTGCCTCACGGCTCCACCACCGGTAGTAACGGATATATCCTCAGCAAGCAGCAGGAGGGGGGGTCTTCGACGGGCTCGACGGCTGCCCCACACAGGACTAGCTGGTTGCCCTCAGGCACCACCATGATTGGACACGCCGCCAAAACTTTCCCGTCTTTGGCAGACGGGTGCGGCCACAGTCTGGGCGCAATAAGGACTGACACCCAGCAGGCCGGGTCCCCGTCGGGACAGGGGACCTCAGACGCAGAGACTAAAAACGGCACGTCCGCTAACGACTCCCCCGCCCCTTCCCCGCAGTCCATCGCCATACACCGAGCACGCAAAACCATGTCCATCCCAGCATCCAACCAGACACTAAAGCTTCTAAACAGGAAATTAACAGAACCAAACGGTGCAGACGAGGAGAGTCAGAATGGACCGGAGGAGGAGAAGTCCCAGCAGACGTCCCCCTCCCAGAACCAGTTACCTCCGAGCCAAAGCGTTGTGCCGGCTGCAGCAACGGCCAAGTCccagacagCATCGAGGAAGAAGAAACGGAAGATGGGAACATACAGTCTGGTCCCCAGGAAGAAAACGAAAGTGCTGAGGCAGGGGACGGTGCTGCAGGTGTTTAGTCAACTTCAATCAACTCAAAGTGCACAGTCTAAAGAGGTATCACACGTGAACGGGGAAAGGGTGGAGAACGAgtcggaggaggaggaagggtgggaggatggagaggagtgggaggaagaggtggagcgGGGTGGAGAGGAAGGTGTCCCCACAGCCCTGGAGAAGAGTCAAACATCAGGCCCTGCCCTTCAGGGGGAGCTGGGAGAGGAGCCGGACTCTGAGGAATCAGCTGAGGAGGAAGGTGAAGAAGAGGGGAACGAGTCAGACTTGAGCTCGGAATCCAGCGTGAAGAAGAGGTTGAAAAAGAAATCAAAGGGAGACTACTTCTTGCTCCGGCCATCCAGGAAACGGAATAGGAAGCCCAAGACTGAGGGACTCCCTGGCACAGGGCCCCAGGGCCAGGCAGGCCTGAGTAAGGACTACACAGAGGTTCCCCTCCACTCACTCAACCTTAAAGCCAAGGAAATGCTGCTCTCCCCACAGCACACAGGAGTTACTGGAGGTGTGGAGGAAGACATGGTGCAGGAGCTACCCCTCTGCAGCTGTCGCATGGAGACACCCAAGAGCCGGGAGATCCTCACACTGGCCGACAGGAAATGCATGGCCACGGAGAGCTTTGACCGACAGCTAAGCAGATGTCAGAGTGCGGTTCTAAAGCATGAGATGATGCGTCCTTCGAACTCTGTGCAGCTGCTGGTGCTGTGTGAGGACCACCGGGCCGGCATGGTCAAACACCAGTGCTGCCCCGGCTGTGGCTTCTTCTGCAGGGCTGGGACCTTCATGGAGTGCCAACTGGATGTCAACATCTCCCACCGTTTCCACCGGGCCTGTGCCTCGGTGCTGAAGGGCCAAACCTTCTGTCCACACTGTGGAGAGGAGGCCAGCAAGGCCAAGGAGGTCACCATTGCCAAGGCCGACACCACCTCCACCATGCCCGCCACACATGCTGCACACGGCCCTGCCACCCCCGGGGCTACAGAGGGCAGGGCAGACACCACCACTGGGGGtctaTCCTGTTTCTCTGTGGGAGGTGATATAAGTGGCCGAGCAGacagctctctctccatcccccctggGCACACACTGGACACCTCCTTCCCTGGGGGCTCCAGAACCGGAGTACTGCCTCCTGCGGTGGGGATTGGGATGGGCATAGGAGTGGGCACCACCCCTAAAGAGACCTTGGAGAGCATCCTGCTGGCACTGGACACAGAGAAACCCAAGAAGCTGCGGTTTCACCCCAAGCAGCTGTTCATCTCTGCCAAACAGGGCGAGCTACAGAAGGTCCTTCTCATGCTGGCGGATGGGATGGACCCTAACTTTAAGATGGAGAGCCAGAGCAGACGCACCCCCCTCCATGTAGCAGCTGCGGCAGGCCACCAGGAGATCTGTCACCTGCTGGTTCAGtctggTGCTAACCTGGACATCTGTGATGAGGACCAGCGCACACCCCTGATGGAGGCCTGTGAGAACAACCACCTGGAGACAGTCCGCTACCTACTGAGTGCAGGAGCCATCGCCAGCCACAAGGATGTGGAGGGGTTCACGTGTCTCCACCTAGCTGCTAAGATTGGCCATTACAACATCGTGGAGCATCTCCTCTCCACAGGACTCATAGACATCAACTGTCAGGACGATGGCGGTTGGACGGCCATGATCTGGGCAACGGAGTATAAGCACCTAAACCAGGTGAAGCTGCTTCTCATTAAAGGGGCTGACATCAACATCAGGGACAAGGAGGAGAACAtctgtctccactgggctgcGTTCTCTGGCAGTGTGGAGATTGCTGAGCTCCTCCTAGAGGCCAAGTGTGATCTCCACGCTGTCAACATCCATGGAGACTCCCCTCTGCACATCGCCGCGCGGGAGAACAGGCTTGAATGTGTCACACTCTTGCTGTCTCGTGGGGTGGATGTCAACTTGAAGAACCGCGAGGGGGAGACCCCGCCGGACTGCTGCAGCCGCAGCTCCAGGGTGTGGCTCACCCTTCAAACAAACAGGAGGATTAGGGAGGCCAGGAGCAGCAAGGGGGAGGAGGTCCTCAACAGAGACATAGCCCGGGGGTATGAGAGAGTTCCAGTCCCCTGTGTCAACTCGGTGGATAGTGAGCCCTGTCCGGACAACTATAAATACGTGCCAGACAACTGTGTCACCTCCCCCATGAACATAGACAAGAACATCACACACTTACAGtactgtgtgtgtaaAGACAACTGCTCCTCAAGCAGCTGCATGTGTGGCCAGCTCAGCCTACGCTGTTGGTATGACAAGAATGGTCGTCTGCTCCCCGAGTTCTATCGTGAGGAACCGCCCCTTATCTTCGAGTGTAACCACGCCTGCTCCTGCTGGAGAACCTGCAAGAACCGTGTGGTCCAGAACGGACTGAGGGTCCGGCTCCAGCTGTTCCGGACCAGTCGGATGGGCTGGGGGGTCCGGACACTGCAGGAAATTCCTCAGGGGACCTTTGTGTGCGAGTGGGTCCGGGCCCCACTTCTTGTCCACAGGTACGTGGGGGAGATCATCTCTGATGCAGAGGCAGATGTCAGGGAAAACGACTCCTACCTGTTCAACCTGGATAGCAAGGTGGGTGACGTGTACTGCATAGATGCCCGTTTCTATGGCAACATCAGCCGGTTCATCAACCACATGTGCGAGCCGAACCTATTCTCCTGCCGGGTGTTCACGGCACACCAGGACCTGCGCTTCCCCCATATCGCCTTCTTCGCCTGCGAGACCATCAAGGCTGGGGAAGAGCTAGGGTTTGACTACGGTGACAATTTCTGGGAAATTAAGGGACAGCACTTTAGCTGTGAGTGCGGCTCTCCCAAGTGCAAGCACTCGGAAGCGACCATCGCCCTGCGCCAGGCAGACAGCTCACCCCTGGACCAGCAGTCCAGCGCCCTCCCTGACACCAGCTCCTCCACCACCCCTTTCTGAGCCCCCTCTCCCACCACCACAAAAAGGACTTCCAGACCAGTGGAGATATGTCTCCATTCCCCCAAACAGCAACCTCCACCCCTAGGCCGTACGTCCCCAGACGCCCCACCTCCATCCCCAGTTTAATCATCACCTTCAGGCCTGTGGAGCCCATCACTGAGACCTAAAATCAACCCCACAGAAAACCCACCTGCTTCATGTTTCAACCAGCTCTAACATCACCTCCTTACCAGCACAAACTCTGAACTTCTGCTAAAACTCACCCTCAGAGCAGGACATATTGGACAGGAAGCCAGTCTGTTTGTTGACATGTGTCCGAAGGCACTATGAACAACTTtcatgagaagaaaaaaacactACTATGAGCCTGGCTCTTGTTTTGTTTCCCATTGTCATTCTCAAACCGGCTTTGCTCTGTTCTGGGTAATAGTGTTTCCTGGCCCTTGGTCTGAATTAAGTTTGTACTAAGCAACAATGTATATCTATCCATGAAAAATATTTCCACTGTGCGAAAGGCATTTGTAGCATAGGAGTGCCCTTACCCTCTCACATGATACCACAGAAATGAGAAATGTTCATGCACAATTTGAGACGTTTGATGTATTTACCTCATGCTATAGTTTTGATTGCAAAGGGGACAGAGGACTTAGGTCACAATCATGTATGTTTCTACTGGATTTCTTCTCTTGAGCATTTCTACAGGAAAATAATTGTCAGTGCTACATATCAATTATGAAAACAAAAAATACTTTTGAATTAACTTTATATTCAAATCTAATTTGAAATCTAATGTTATATTCTGTTACATTTAGTCAAGTGTATTGTATGCAGAATCAGGTTATGGAAAGACCTTTTGATAATGATCATGAGTACAACATTTGAAGTCGATGAGAATACTAACCAATCATCTCACTGTTCTGTTTCGATGGGCGAAGTAAAGTTGACACTGACCAGTAAAGGCAGGTGCAATCTGTTTTGACCACAAACGAGTGGCAGATTCTGTCAGTTCTGGCATGAATTTCTCTTCAACACAATGGTCCTTTTCTATTAAATACTTTTCTTCTGGAAGCGGTATGTGCGTATGTGAAAGGTGGTGTGACATCAAATTGCCCAACTGTAAGGGTGTCAAGATTGCAAAAGGGTTGAGGTGGGAGTTGACTAAGCTGTACagttatgtactatactgtacctaCAAAATTAAAGCGGGtggctttttattttttatctgcaGGATTTTTAAGCATGTTTAAGGCTGACACCTTGAATATTaagttttaaatacattttacacaATTCTGGAGGGACTGCATTGGGGTTGACTGTTAATGGGGTGAGATGCAAGCAaattctgctgccaatgttttcttttccttttgttgattttacaaattatttttctTTTTACATTTAACTTCAGTTTTGTatctgtagttactgtagtttaGCCTGTATCAATTTTGTTACACCATTTCATGTTGATGGAAACCTACACATTATTCCTATGTATTTAATGTGGTTAGTACAGTAGTGACTCTTGTGCACATTTTCAAAGGTATGAATATAAAAAGGTTATACAAAATGATTTACTTTCTGTTACATATTTCTGGACCGTGAAACATCCATCTAATTGGTTGTATCTTTCTTTTTCAATAAATTTACTACTAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434654 lncRNA upstream 71248 25457260 ~ 25457661 (+) True G382504
TU434647 lncRNA upstream 75815 25452872 ~ 25453094 (+) True G382497
TU434625 lncRNA upstream 79339 25442759 ~ 25449570 (+) True G382478
TU434623 lncRNA upstream 93102 25435538 ~ 25435807 (+) True G382476
TU434477 lncRNA upstream 190574 25338105 ~ 25338335 (+) True G382341
TU434757 lncRNA downstream 63100 25624113 ~ 25624865 (+) True G382598
TU434832 lncRNA downstream 214587 25775600 ~ 25775817 (+) True G382670
TU434835 lncRNA downstream 221383 25782396 ~ 25782611 (+) True G382673
TU434815 lncRNA downstream 231771 25792784 ~ 25793763 (+) True cacna1b
TU434814 lncRNA downstream 233088 25794101 ~ 25795410 (+) True G382652
XM_021602232.2 mRNA upstream 46120 25473913 ~ 25482789 (+) True LOC110523493
XM_021602226.2 mRNA upstream 104683 25419705 ~ 25424226 (+) True aqp3b
trnaa-ugc-10 mRNA upstream 809478 24719360 ~ 24719431 (+) True trnaa-ugc-10
trnaa-ugc-9 mRNA upstream 824123 24704715 ~ 24704786 (+) True trnaa-ugc-9
XM_021602216.2 mRNA upstream 884897 24635703 ~ 24644012 (+) True LOC110523483
NM_001124629.1 mRNA downstream 111887 25672900 ~ 25792999 (+) False cacna1b
XM_036977140.1 mRNA downstream 308730 25869743 ~ 25938520 (+) True LOC110523500
XM_021601319.2 mRNA downstream 391081 25952094 ~ 25955508 (+) True LOC110522854
XM_021602252.2 mRNA downstream 434635 25995648 ~ 26149621 (+) True whrna
XR_005051693.1 mRNA downstream 601070 26162083 ~ 26166903 (+) True LOC118964579
TU434321 other upstream 303179 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 752480 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 1684564 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 1685063 23838524 ~ 23843846 (+) True LOC110523468
TU432380 other upstream 1686193 23838524 ~ 23842716 (+) False LOC110523468
TU434985 other downstream 613932 26174945 ~ 26186690 (+) True LOC110523503
TU435241 other downstream 876606 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 876646 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 1100825 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 2114339 27675352 ~ 27683393 (+) True LOC110522888

Expression Profile