RNA id: XM_036977147.1


Basic Information

Item Value
RNA id XM_036977147.1
length 2549
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110522865
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26437517 ~ 26502284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCCATTTTCTCTGttttgagtaatgaagagagagagaaagagggtgagggagaaagagagagagagcactgttGGTGCTTGTCTGTGTATTCTGGGTTACCTCACACATGCACTCTTTAGACACAGTGGGGAGAAGAGGCGCTGAATCTATTGTTTTCTTTCTGAGAGAGCGCTCTGCTGACCCGAAAACACTAAGATTCCTGCCGTAGTGGAATGCCTGTCTTTCCTGGATTTCCTTTAACGTTATAGTGTTTTCTCACCGAATTTCTCCATCCTTGGTTTTTCTGGAATGAGCTGTTTCCTGCCTGCGTCGTTTCCATGCCAGCATGGGAACTGTCGTGTctaaaaggaagaatttaagaAACGATGCGATATCTTCCGTGGCAGCAAAAGTTAGaGCAGCGCGAGCATTTGGAGAGTACCTGTCCCACACACACCCTGAGAACCAAAACGGATCAGCCCATCTCCTGTCTGACACATTTGTGGGCCCAGACTCTGACTCCCCTGGTGGTGTCCgtcaccacaacaacaaccatccATACCCCCACAGGGGTTCTCCAGCCCCCCCTGAGTCCAGCCTGGTGAAATCTCCGCTGGGCCACCTCCAGCCCCCGCccccctccatcaccaccaccaagACCCGCCTGTCTCTGGAGCGCAGCTTCTCAGCCGAAGAGGACCAGCAGAAGTGTGTGGAGTGTGCCCTGCAGCCTGCCCGTGTCTACACCATCACCGGAGAGCACAGTATGCTGGGTAGCAACCGGGGCAGCAAGGAGAGCCTGGAGCTGGAAGTGCTGAAGGGGGCGTCGACCCTGGTCcagccctccacctccccctcctccacctcctcccccacccAGCACCACCTTCGCCATGGACACCGTGGCAACACTCATCGCGACGATGGGAGCCATCGTCACGGCAACCCTGTTGCCGGCGGCAGCAGCAGCAACCACCACACCCTGGCTGTTACCGGCGGGGGTGCTGCCCACCATGGTCACCATGGCAGCCACCACCACCTGTCCCAGCAGCCCCTGTCAAGCTCGGTCAGCGCCCACAACATCCGCAGCTGGGGTGAGGGGGGAAAGGGGGGCTCGCGGGAGGACTGCAGCCTCAACATGGCCTTGGACTCTAGCGGGGCTCCATCCCGTAGCCAGGGCTCCCTGGATCTAGAGAGCTCCCGCGAGGCAGGCAAGCAACACAGACTCCTTGAGAGGATGTGGAGTGTGGACCGGATGACTGGGCTGGAGAGAGAGGACAACAACTGGTACCCAAAAGAAAACATGTTCAGCTTTCAGACTGCTTCTACCACCATGCAGGCGATATCGAACTTCCGGAAGCATCTTAGAATGGTGGGCAGCAGGAGAATGAAGGCACAGAGTGGGGACCTGCCAGCCTCATGTGGGACTCTGGATGAGGGGGAGCGTGAGGACCTagactgggaggaggagagggagatggagagactggCCTGTGAGGGAGATGACTTCATCCCACCTAAAATTATGcTGATCTCCTCCAAAGTCCCCAAGGCAGAGTACGTTCCCACCATCATCCGCAGGGATGACCCCTCAATCATCCCCATCCTCTATGACCATGAACATGCTACGTTTGATGATATCCTCGAGGAGATTGACAAGAAGCTAACAGCCTACAGGAGAGGCAGCAGAATCTGGAGGATGCTCATCTTCTGTCAGGGAGGTCCAGGGCATCTGTACCTGTTGAAGAATAAAGTGGCCACATTCGCCAaggtggagaaagaggaggacatGAGTCAGTTCTGGAGGAGGCTGAGTCGGTTTATGAGCAAAGTGAACCCTGAACCCAACCTCATCCACATTATGGGCTGCTATGTCCTAGGAAACCCCAATGGAGAGAAGCTGTTCCAGAAGCTAAAGAACCTGATGAGGCCTTACTCCATCGAATTTGAGTCACCGCTGGAGCTGTCCGCACAGGGAAAAGAGATTATTGAGATGTACTTTGACTTCCGTCTCTTCCGTCTGTGGAAAACCCGCCAGCACTCCAAACTCCTGGATTATGAAGATCTTTTGTGACGGGGCTCCAAGTCAAGTCAACCCTGTAGCATATATACAGTCTATACTGGGGCAGGAGGACCCACTGAACACCACTGCTCAACACAACTGTAACACCCATCATACCTGCTTTCATCCAGGAGAGGGctgggagaggtggaagaggggaagagggagaggagtgatagagaggatgaagaggaggaggaggatgaagggtGACATAGCAGCTTTCACGGTGCTGTGTGCCTAACCCATTATTTATTTCAACCCTCCTCTTCACCTCCTACGCAACCACAAAGGTCAGGGGTTAAAAAGAGAGAAACCAAGCCATAGGAATGCTAGAAGGACAAGGAGACCTGAAGATTGGAGAGAAAGAGTGATGGAGTATAaacggagagacagagggatgatcttcggtgctctctctttctctgcctcggGGAAGGTGTCTGagatgctctctctttctctccctcgggGAAGGTGTCTGagatgctctctctttctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU435100 lncRNA upstream 237645 26191034 ~ 26199874 (+) True G382925
TU434986 lncRNA upstream 269371 26167202 ~ 26168148 (+) True G382815
TU434982 lncRNA upstream 284061 26152625 ~ 26153458 (+) True G382811
TU434966 lncRNA upstream 456891 25980401 ~ 25980628 (+) True G382795
TU434853 lncRNA upstream 621956 25806737 ~ 25815563 (+) True G382689
TU435962 lncRNA downstream 15914 26518198 ~ 26520085 (+) False G383723
TU435964 lncRNA downstream 15914 26518198 ~ 26520085 (+) False G383723
TU435965 lncRNA downstream 15914 26518198 ~ 26520171 (+) True G383723
TU435993 lncRNA downstream 48172 26550456 ~ 26579192 (+) True G383750
TU436000 lncRNA downstream 77963 26580247 ~ 26580534 (+) True G383755
XM_036976545.1 mRNA upstream 40066 26393838 ~ 26397453 (+) True pnpla7a
LOC110522858 mRNA upstream 50849 26385129 ~ 26386670 (+) True LOC110522858
XM_021602262.2 mRNA upstream 67718 26365281 ~ 26369801 (+) False LOC110523509
XM_021602261.2 mRNA upstream 67718 26365288 ~ 26369801 (+) True LOC110523509
XM_021602260.2 mRNA upstream 85571 26313498 ~ 26351948 (+) True LOC110523508
XM_036977157.1 mRNA downstream 351787 26854071 ~ 26877217 (+) False pus1
XM_021602276.2 mRNA downstream 371363 26873647 ~ 26877217 (+) False pus1
XM_036977158.1 mRNA downstream 372033 26874317 ~ 26877217 (+) True pus1
XM_021602278.2 mRNA downstream 375232 26877516 ~ 26884592 (+) True noc4l
XM_021602280.2 mRNA downstream 382603 26884887 ~ 26887645 (+) False LOC110523521
TU434985 other upstream 250829 26174945 ~ 26186690 (+) True LOC110523503
TU434321 other upstream 1211789 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 1661090 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 2593174 23838524 ~ 23844345 (+) False LOC110523468
TU436048 other downstream 159554 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 1173068 27675352 ~ 27683393 (+) True LOC110522888
TU437387 other downstream 1204430 27706714 ~ 27707078 (+) True G385053
TU437511 other downstream 1402183 27904467 ~ 27904731 (+) True G385171
TU438217 other downstream 1914321 28416605 ~ 28417555 (+) True G385805

Expression Profile