RNA id: XM_036977157.1


Basic Information

Item Value
RNA id XM_036977157.1
length 1494
RNA type mRNA
GC content 0.50
exon number 6
gene id pus1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26854071 ~ 26877217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACATGTTACTCACCGTTAGGTCCCCATTTTTCCCGCTGCCTCTTCACCTGGTCTAAACCTAGACCTGTGCTTTCGTTCACGTTGAAATGGCTGTAAACTTCCTCCACTGTCTTTGTGTGAGCGTTCTCCATGGTTGGCTTTACAAGTGTGCAGGGATCCGGTGGATGATGAGTGAAGAAGGGTCAGGAAATATGCTGATCAAGCCACTGAAACGAGTGGAGGAAGGAAATGGAGAGTCGGGTGAGAATGGACACATCAGAAAGAAGCTGAAGTCTGTAGAACCAACTGGCAATGAGAGgaaacaccccaaaagaaaagtgGTCCTGCTTTTGGCATATTCAGGCAAAGGTTACTACGGTATGCAGAGAAATGCTGGATCCTCCCAGTTCAAAACCATTGAGGATGAGCTGGTCACAGCACTGATTAAGTCTGGGTGCATCCCAGACAACCATGGAGATGACATGAAAAAAATGTCGTTCCAAAGATGTGCGAGAACAGACAAGGGTGTTTCTGCAGCAGGTCAAGTGGTCTCTCTAAAACTGTGGATGATTGAAGACGTAATGGAAAAGATCAACTCCAATCTTCCACCACAGATCAGAGTGCTGGGTCTGAAACGAGTGACTGGCGGCTTCAATTCTAAAAACAGCTGTGATGCCCGCACATACTCCTACATGCTCCCCACTGTGGCCTTCTCCCCAAAGGACTATTACACCAACAATTCCGCTGCATTCCGCCTTGAGCCAGAGACACTGCAGAGAGTAAACCAGCTGTTTGGCAGCTACAAGGGCACCCATAACTTTCACAACTTCACCTCCCAGAAGGCCGCGCGGGACCCCAGCGCCCGCCGCTACATCACAGAGATGTCCTGTGGCGAGCCCTTTGTGCGTGGCGGCGCCGAGTTCGCAGAGATTACTGTGCGTGGCCAGAGCTTCATGATGCATCAGATCCGGAAGATGATCGGCCTGGTGATAGCTGTGGTGAAGGGCTATTCGGGGGACGAAGTGTTAAAGCGAAGCTGGGGTGAGGAGAAAGTGGATGTGCCGAAAGCCCCTGGGCTGGGCCTGGTACTGGAGAAGGTGCACTTTGACAGGTACAACAAGCGGTTTGGTGGGGACGGCCTCCATGAGTGCCTGGAGTGGACTGAAGAGGAGCAGGCCATCTTGGCTTTCAAGGAGGAGCACATCTACCCCAGCATTGTGGAGACAGAGTGCAAGGAAGGGTCCATGGCTAGCTGGATGGCCACACTGCCCATACATGACTTTGAGGCAACTGCAACAGGAGCGCAGGATAAGGACAGGGAGCAGGATGATGAGGAGGGTAATAGATCAGATTCTGCACTTTGAAGTCTCTGGCAAGTGGAAAGACACCTTTTGCTTTGCTGTATCTCAAGAATGAGCTTTTGTTTTGCTATGGAAATGCATTGTCAGTAATGCCACTGATTTACTCAATAATGAAgacattttaataaaaaaaattgttatTTTTAAACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436146 lncRNA upstream 37884 26810795 ~ 26816187 (+) False G383886
TU436148 lncRNA upstream 37884 26810795 ~ 26816187 (+) False G383886
TU436147 lncRNA upstream 37884 26815529 ~ 26816187 (+) True G383886
TU436046 lncRNA upstream 193407 26658660 ~ 26660664 (+) True G383792
TU436044 lncRNA upstream 195921 26657866 ~ 26658150 (+) True G383791
TU436157 lncRNA downstream 24571 26901788 ~ 26905762 (+) True G383895
TU436233 lncRNA downstream 79371 26956588 ~ 26957041 (+) True G383971
TU436266 lncRNA downstream 126357 27003574 ~ 27004136 (+) True G384003
TU436322 lncRNA downstream 203245 27080462 ~ 27080702 (+) True G384058
TU436337 lncRNA downstream 231583 27108800 ~ 27109029 (+) True G384073
XM_036977146.1 mRNA upstream 351787 26437517 ~ 26502284 (+) False LOC110522865
XM_036977147.1 mRNA upstream 351787 26437519 ~ 26502284 (+) False LOC110522865
XM_036976545.1 mRNA upstream 456618 26393838 ~ 26397453 (+) True pnpla7a
LOC110522858 mRNA upstream 467401 26385129 ~ 26386670 (+) True LOC110522858
XM_021602262.2 mRNA upstream 484270 26365281 ~ 26369801 (+) False LOC110523509
XM_021602278.2 mRNA downstream 299 26877516 ~ 26884592 (+) True noc4l
XM_021602280.2 mRNA downstream 7670 26884887 ~ 26887645 (+) False LOC110523521
XM_021602279.2 mRNA downstream 7684 26884901 ~ 26887645 (+) False LOC110523521
XM_036977159.1 mRNA downstream 7755 26884972 ~ 26887645 (+) True LOC110523521
NM_001165158.1 mRNA downstream 12757 26889974 ~ 26892420 (+) True atpbb
TU436048 other upstream 190458 26661838 ~ 26663613 (+) True G383794
TU435241 other upstream 393375 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other upstream 393536 26437659 ~ 26460535 (+) True LOC110522865
TU434985 other upstream 667381 26174945 ~ 26186690 (+) True LOC110523503
TU434321 other upstream 1628341 25225442 ~ 25225730 (+) True G382186
TU437362 other downstream 798135 27675352 ~ 27683393 (+) True LOC110522888
TU437387 other downstream 829497 27706714 ~ 27707078 (+) True G385053
TU437511 other downstream 1027250 27904467 ~ 27904731 (+) True G385171
TU438217 other downstream 1539388 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 2049060 28926277 ~ 28930931 (+) False spag8

Expression Profile