RNA id: XM_021602360.2


Basic Information

Item Value
RNA id XM_021602360.2
length 1981
RNA type mRNA
GC content 0.39
exon number 6
gene id spag8
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28926263 ~ 28931410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCACAACAGAATAATAAATAGTGGTAGCTACGTTTAGCTagaagcaagctagctagctacatcaacTATCTTGGTTTCACAAGATAAATGAGCGATTTCACACTACTAACTAAGTGCATTGTAATGAAAATATAATGACTGCATTGGACACTTCTGTTGAACAAAAATCTATTGGAAAATGTTTGCTGTATAACTGGGTAGAGGAGCGGGCCACTGCCGTCCTTGACAATGAGAGGCCCAGAGCGCACATCCACAAAAATGGACATAAAGGGATTCTCACCATGGATCTGTCATCCAAAGTTCAAGGTGTCACCACAGTGAATGCTGCTTTCACCCCTCCCAGGGGTCATGGGGTGAGACAAAGAGGCCTCAGAGGAGAACTTTTGGAAAATGATCTGCTCAAGAAAATAAGtgagcagacacatgcagaaTTTAATCCTGAGCCTCCCAAAACAGAATTCTGCTCCACTACCAAAGAGGACTACAAAGTTGAAGGCTTTCTGCCTTCCCTGCCTTCACCACTAAAGGTGCATGACTACAAAAGCGATCAGGCAATTACCTTTTGGAGTGAGAATCATCATCAGATACAGGGTGTGACAGCGGTGAGAACCAGGGATACCCCATTCAAGAAGAATGCCACCTTCAGCACACCTATCAGTGAACACATGGATGACAAGCCTATTCTGTACACACCGGAGAATTAAGCTGTTACTCATTGGACACAGTGGTATTAAATTATTGTTCCATAATATTGTGTATGAATATTGCTCTGTTTATCATTTCAATTAACTAGTCTCTGCACTGTATATGAATTGCAAAAGTACTGCACAAATGATTTAACACAAGCAGACAGATGAATGGTTTTGAATTGTAACTTTATCTCAGGGTCCTTGTCTCCTTGCAGAAttacagttgttgttttttttattcataCCAGAGCTTTGTATTAAGAATATTCTCTCTGTTTGTTCATGCTTTTATTTTTGTTTGTAGGTTATTTTCTCCTATGGTCTTTTTCTCAAACCTTTGCAACTTGTAATTACCACAAATGAGCAGTGCTGAACAACAGAAAGCCACATGTTCCACTTTCCTCTGTGCTGGGCAAAAATGGATCTGGCTATTGTCCTTGGACAAATGGCAAGAAAACCATTTGTTTTTTGAGATGAGGAAAGTGTTTTTCCAACGTTAAAAAGAGAGGCACACAGAACCCTCCGCCTTACAGATGTCAGAAATATTGATGTTCATATTGATGTTCATGCAGCCTCCTCACTTTAGAGAGCATGGCTCTGATTCAGATTCGTGTTCTGTCAATCAAGAGACATATCTACAttgtgtccctctctcctcttgctttcaGCAGAGATTATGAGGAGGTAGCTATGGCAACAAGTAATTTTAGACTACATTTATGCAAATTATCCCCCAAAACATTTCCTTACCTCATGGGATTAGAGGGGGAAACAATTGATGTCTGAAACAGATGACATTTAGCTACTTCCAGCCAAGTGAAATATATTGCATATAATTGTTTTAATTCAAATTAACTGTGAAAAAGTAAATATTTCCTTGAATAAATTTGGCTACTAATTTTCTTCCATGATTCAATTAAATTAATAATGTATGTTTTGATCTATACATAACTGTGTATTTATTTAAGTTTATAAAACATGTATTACAATACTTCATTCTCTGTATTTCCCTGTGAAGGGAGCACTGCTCTGAGTTATTCAAATGAATGTAGTGCTTTTGTCAGAGGAGACAAATGTTGAACCATCTTATGAACTATGTGCTTgtgatacagtaggcctacataccTGCAGTAGAAATTCCTTCAATGCATTCCCCCGTCAAAAGTTCCCTTCTtggttgttgttgtctctcctCCCAAATTGTATCAAAAATGCTAATGGCGTTCTTCACCCTCCCTTCAACTCTCTTCAAAAGATAAAACCAGGAGCCTTTGATGACTCAACAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438898 lncRNA upstream 73112 28852880 ~ 28853151 (+) True G386445
TU438485 lncRNA upstream 155696 28756510 ~ 28770567 (+) True G386065
TU438477 lncRNA upstream 207241 28718802 ~ 28719022 (+) True G386057
TU438463 lncRNA upstream 220751 28705178 ~ 28705512 (+) True G386044
TU438443 lncRNA upstream 241249 28684742 ~ 28685014 (+) True G386024
TU438991 lncRNA downstream 30407 28961817 ~ 28965648 (+) True G386537
TU439028 lncRNA downstream 62735 28994145 ~ 28995123 (+) True G386568
TU439069 lncRNA downstream 139402 29070812 ~ 29073163 (+) True G386606
TU439295 lncRNA downstream 242938 29174348 ~ 29174799 (+) False LOC110523576
TU439294 lncRNA downstream 256211 29187621 ~ 29187912 (+) True LOC110523576
XM_021602358.2 mRNA upstream 46120 28876573 ~ 28880143 (+) True LOC110523559
XM_021602357.2 mRNA upstream 89074 28829715 ~ 28837189 (+) True zfand5b
XM_021602355.2 mRNA upstream 96835 28805226 ~ 28829428 (+) True smc5
XM_021602354.2 mRNA upstream 121552 28796448 ~ 28804711 (+) True LOC110523556
XM_021602346.2 mRNA upstream 145532 28752511 ~ 28780731 (+) False LOC110523554
XM_021602365.2 mRNA downstream 73357 29004767 ~ 29009110 (+) True ssna1
XM_021602368.2 mRNA downstream 113693 29045103 ~ 29055942 (+) False alad
XM_021602367.2 mRNA downstream 113857 29045267 ~ 29055942 (+) True alad
LOC110522906 mRNA downstream 129865 29061275 ~ 29067123 (+) True LOC110522906
XM_036977216.1 mRNA downstream 158115 29089525 ~ 29097342 (+) False coq4
TU438217 other upstream 508708 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1021532 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1219185 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1242870 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 2262650 26661838 ~ 26663613 (+) True G383794
TU439971 other downstream 810390 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 965576 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1355541 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 3028945 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 3288771 32220181 ~ 32220533 (+) True G390393

Expression Profile