RNA id: XM_036977228.1


Basic Information

Item Value
RNA id XM_036977228.1
length 6533
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110523578
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29254638 ~ 29262641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCGCTAGCAACTCCAACTTTGCGTGACGTCAGTTTGACCACATCGTGTGTTTTCTTGAAATATTTACACAATGTTTATAGCTTGAAATACTTATACGATATTATCCGAAATCTTACCATCTACCAATTTAACTGCAGCGCAACATCTTTCAAGACTAGCTGATAAACTAGCCACAGCGAAGTATCTCGTTAGCCAACGTTAACGCTTTCAAACATTTGCAGACAATACGGCGACATATTTTGTTATACAGGAAAGGAATTCTGTTTTGGAGTGAACAATGAGCAATACCGGTGTGAGATGGGCTACTGCTGCGGGGAGACCGAGTGCTGCACTTACTACTATGAGCTGTGGTGGTTCTGGCTGGTGTGGACCCTCATCATAATGCTGAGTTGCTGCTGTGCCTACCGTCACCGTCGGGTCAAGATGCGgctgcagcaggagcagcgccaGCGCGAAATCAGCCTTATGGCCTATCAGGGAGCTTCTAGTTCTTtcatctcccctccacccctcaacTTGAGGTTCTGGACAGACTGCAAGCTTCCTGACTATGAAGAGGTGGTGGGTCATCCCCCGACTCCACCTCCGCCTTACTCCGAGATACCCCCAGAGACCACCCCTCCCATCCTACTGCCCCCCATCCAATCAGAAGCTGCTGTGGTGCTGGAGCCCCCAACAGAGGACACTCCAAGAGAGGAGCAGGCTGCTAGTTCCTCAGCAGACCAGGAATCCACATCTGCTCCCAGCAAATCAGAACGACCGGTGGAAGAGGAACTGGTGACCCGGCGCAGGCATGTGACTGGCGACTCGGGgatcgaggtgtgtgtgtgccaactGGATGAGAGCTCTGGGCCGGAAGAGGACGAGGAGCAGGTGTGTCAGGGGGCCAGGGGGGACTGCTGCTCTGCCTCGGAGCACCACCACATCAGACACAAAGAGAGAACCCCAGGGCCTCAGCCCAAGGGCCAGCACCGGAGACCGCCTGATCTGAGCTCCACCACCAACCACccagaggctgctgctgctgccggaTCTGCGCTTTAGGGAGGGAGTGCCCTTGTCATCATAACAATAACCCAGACACCACCAGCAAATGAAATGTCCCACAACGACTCACCAAATGAACCAGGTTGTCCTGCTCTTTGACATGCTTGTCAGTTATGATCCATAAAATGACGCCAATGATGACAAAAAAAGTTTTTTTCGAAGATGCTTAGTTTGGCTAACGGTTTAATTCTTTAATACCCATGGATGGTCCCTCGTCTGCTTTGTTTAGTTCTTGCAATGGTGATGATGAAAATGCCAACTTCTAGAGATCTACCAAGTGGCAAGAAGAGGTGCTGATGCTGGTACAGAATTGACTACATCTACCCACCCACTTGTCCCACCCAACTGTTTAGCCTGGACATTTTTCCTTTGGTCCTTCTAACATTTCACCTCTGTGGGGACAGGGCAGGATGGCATACCACCATGGCCACCAATCCCTAGGCCCCAGCACGTAGGGGCCAAAACATAAGATCATGCTACCAGACACAGTCCTGACCAGGGGATACAAACGGTTACGGATAGAACTTGTTTTTgcaggggtttgtgtgtgtgtactgtgtaatcTAGGACACAGCTGCAAAGTGATGTCACCCCTGAGGTAATCTTGGCCTGCATCTGGTTTCCTTGTGGAGTGACAGCAGGGCTATTTGCATCCAGAGAAAAGGCTGGGAAGTGAAGATGTGCCTGTCTCTTATAGCGTCTTTCTGAACTGTGTCCCAATAACATCAGACTCCACCCTTCCTACACCCATCCCTCATGTCTCCACCAGTACTCCGGTCAACACTTGGCCAGACTGAAAGGTATTGAATGGACTGGAACGGATGTTTTGATGTGTGATTATCTGGTCTGACTGGCCAAGTGAACTGAAGACGTGACAATATCCCATCGCTGTGCCTGCAACTTGGTATCTATAAAAAGCATTGTGGTGGTCGACCGTGTATGTGTTTTCACAGACCGGCGGTGAAATAACGTGGCGTGTGTGTGGTGGGGTCAGCAGCATTTTGCAGGACTGACAGTCTCACCGAGTGGTAAGGGGTATGTTGTTGGGAATAAAAGTACAAACCAGAGGGTGGGAAGACTGAAGTTTCAGCAGTGTAGTACTTTGTCCTGTATCATTTTCTTGTCTTTTTATTACTTCTCTAAAAACCTGCTTTAGCTGAGGCCACTATAACCCACATCAATGGCAAAGAATCTCTTATCCAAGGGATGCTGTGAGTGTGGAGTAGTGTAGTCTTATTTAGTGTATCCTCAGTGTCCTGGCCCCTGGTGTAAGTTAGTGCACTCAACTCACTAGGCTTTAGACCactttttttctttaaaaaaaaatgcactgGGTTTTTGTTTAGAGGGCATGAGTAATtaatttgtgtgtctgtgtaggtaGATGTGTGTTCTGATTCGTCCTGTCAGCAACAGTGTGTTTTCAGGCCCGTGTTTCATATAGTCTACTACTCCCAGGCCATTGGCCCCGAGCTGACAATGATGAATCGCTGCTGTTTTTACCCAGCAGCAGCGGGAGTCTGATAGTGTCACTCCCTTTCTGCCACGAGTCCCCTGGCCGTGTGGGACTCGGACAGAGTGAACCAAGGTTTAAGTATAGACACCATGTATCTAGTTTCATCATGTTATGACTTTGCACTGGGCCTGCAATGTGCTGTTGCATACGCCCTTGGCTTGCAGTGGTGTGAACATTGTAGAAGCAATGTGACAGATTTGTGTTGGTATTTTCCATTCAGTGGGATGGGGTTGGCTTTGCTGTTAGTGCAGCTGCACACTGTTATGATAAACCAGTGAAGTACGTTGCTTGCCCAGCATGTGTCGAAGCACAGCCGTAGAATCGGGAGTGTGTTTTTATTCTGCCGTTCCACCTAAAAATAAGCACAAAAGTCCAGCTGCCTTGGGTGTGTTTCAAATGGCAGTGAAGATATGATAGTTTTATTATTTAGGGTATTGATTTGCTTTCATGCAGCACTTATTGATCAAGTAGGTTATGGACTGATGCACTGTTTATTATTTCACTGCTAATGAAAAAGGACAGACCAAGACATTAATTTCAACTATCAATCAAtaagttgtctgtctgtcttcaagtGTTAAGTCTTGACACTATAAAAGTCAGAGGATAGTCATGCACTCACAAAGACTCACCCGCTCACATTAGGACACTAACATGTTTTTGATAAGACACCATAAGTTGCCTTGGTAGGTTGCTAGGGAACAGACATGAGGCTCAAGGTGCACCACAACAGAGGGGTATCCTACGAAGCAGGTTTGATGAGTTGGCGAGATACCATTGGTGAACCCTGAGTTCAACTCGGGATAACCAGTCATACGAAAGTGGCTCACATAGTATTCTAATTCCTGATTCTATGGTGGCTCAACTTTGagccaggtacatttctatggcaacgaATCCTTCAGCACTTACCTGCTCTGGGGTCGGCTAACTCCACTTATCATGAATGAAATGACTGGGCTGTGAGTTGAGGACTAtgaaatcagattccctcccACTTGCAAAGATTGTGTCATCACCCCCTTTATTTGAGGGAGATGACTGATTTTAAATATTATCCATGGTCGTAGTACAGAGGAAGCCTGTGCTgtaatgtgaagctaactgaagctggttagctttagaaaaccctgagtagatctagcttgctttGTAGGATACCCCTCAGAAGGCATATGAACACTCATTTTAAGTGCTCCTTCTGAGGCATAAGAAAATAAATGCCTTACTGTGGCACGGTGGTAAAATGTAGTTAGGGACAGGTAGACTAAATGTGTTTTGGCATCTGTGTTTGAAGAGTAGGCGATTATATTCCAGACTTGTGCTTTGGAAGAAACCTAAAATGTTTTAGCCCCCCTCTCCCATGTTTGAAGCATGGTGTGCATAGTTTCTTCTAGTAGTCCAGAGGAGTCCTTTTTTTATACAGATGGAGTCCGAAGTGTAAAATGATCTGTCTGATGTATCGATTGGCTCAACTTATTCTAGACTGTGGTTATGAGTTGCAGGAAATGTATCTGAGTGAAACCACAAGACGAGATCATATGTTGTAAAAGCTGGCATGTAGAATAGGTAACATTTGTTTAGTCAACGCTTGTGTATGACGTTTTAAAATGCCATCTGCTTCTCCCTGGTTATCTGTGGTTATTTGATCACTTTTTTTTCCTTCCCCTCACCCATTTTTCTTTAGTTatgattgtatttttatttcaagGATATGATCTAGATAAGTTTGATATTTGAACTGACCTGAAAGGATGTTGAATTACTACCAAACAAAATGATGTTAAGAAATCCTGTTTTAGTTTTTCTTGTGCTCATATGAGATGTTTTTTGAATGGTTGGGGGGGAATGACAAATGTAGATGCTAAAGTGCATTTATTTTTATGCAATATAGATAAATTAAGATTATGACGTTGAGGGTGTTTCATGTTTCTGAAAAAAGAAAATGGGAACCCATAGTTTCAGTCCCATTGCTCACTACTTACTGGGCAAACTCTTGTTTGGCTTTCACATGTTTACCTAGATAAAGGGCTATCAGTCAGTCATGGACAAACACCCATCCATTTCATTCATCTGCTCTGTAATTTTCCTCTTACCTACAGTTGCAGACACCGGCGATATGTGAACGTAATTCTTTGGACTTTTGTAGTACTCGTGTGAATAATGGGCGATTTGTATATTTTCAAGCATCTTTTGCCTTTTTGTTCCCTGTTCGCTTTTGTTTCAATGTTCACAGAGGCGCGTGAAGCTCTTATCCCTCGCTCGGTCTCTTCTTTCTCTCAAACCCCACCCAGTCCCCTATGGCCTCTCACCATATACCAGCACAGAGGGCACAAGCTAGGATCAGTGTCAAGTTGGGTATGTGGCCCCTGATGAGGTAACTAGCCCCAGGTGTGATAGTGATGGGGGCTTTAGCCATGGCTCATTGCATCCCTCTAGACCATGAGACACCCCCCCTCTCCCCCGGGGGCCCGACCATACCGAGCATGGTAACAGAAACTGTGGCAACCCACACCAATGTTTGTCTTTGTGAGATGGGGTTTTGCCTCTGCATATATCATCCTTAAGATCATGCAGGCACAATTATATTTTGAGATTGTTTGCCTGTATCTAAATTATCACTGTACTCAACCCACACGTTGTCTCATACACGCGATCCTATTGTCATGAatagaaaacttttttttttttaaatgggcatCAGTATTTGGCATCTTTCAGAATCTACCATTAGCACCAGTGCCATCAGTTGTCCAGTTTCATTTACCTTGCTCACTACACCAAAGGCCTCCTTTCACCCTAAATTGTTCCTCTTTTCTGCTCTACGCGCctctgtaatgtactgtaactgACTAGCCTATGCAAAAAAACCAAACCCATTGATATGCTGCAACAACTCTTCTGTGTGGTTGCCAGTACTAGCAATATTACTCTCAGTACATGTCGCAAGTGTACCTcagtttattttttgtttttattgcTACTATGGTGTTTCGTGTGTATGCTTTGAAAGTAAATGTGCATATCTACATGTTACCTCTTGGTGGGTTGGGGAGTAAAGATAAAAAGCCATTCTAGTTAATTTTGTCTTTTTGTTTCTGTTAGTCTTTAGTGACATGGATAGAAGTACAGTCTGCTGTCATTCTGATCTGCTAAGAATATTACTCCTGCTTATTATGAAGAAAAAATACATCTGTTTAACTTGTGTAAACTAAAGGAGTGTTTTGAAttatattttgttgtattaatACTATTTAATCTCTCCTCGGACTAATATTATTCTGTTGGTCCCGTGGGTACCTTTGCCACTGTTCCACCCCTTATGTGTTGCGCTGTCATGGTGTATTTGTGAACAGTGAGATGGCTTGTTTTTATTGTATTTGAGACATTTTCAGTGACTACTTAATGGTTGCCTTCTCTCATTGATTGCCCAACCTTTTGATATAGAAGATGGTGAATGTGACCTTTTATCAAGTATGGAAGCAAATCTAATCCCAGTGCTAGATAACCGAGTGGAGAAAATGATCAGGTCTCTTAAATGGGTTGTTTAGGGTACACCTCCGCTAGCCCAGGAGTTTGTTGCACTTGTAATCATACATCACCAAGGCAACAATGTACTCGCAACATAATCTAAGGATGCTCTGTTTAACCAACATGAAACCCAGATGTTTCTTTCATTTCTCCCTCAACCATAGATAATGTCAGGCGGATGTTGTGGCTGATGCGTATGTAGAAAGACTTTGCAAAAACAAACACCCACGCTAGAGAAGGAACCGGTCGACCACAATCACAGACCCTTTCGTGTTCTTTTTCCTATCTAGATCAAGCCCCCCAAAAAGTGTAGGAAAAAAAAAAAGCACTAAAATTTGTGGTACATTTTAATGCTTTGGTTTAGTAGGGGGTCTGCTGTGTACTGTTGGGTAATTtggattttatttttgtataataaaaCAAACATTGGCACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439305 lncRNA upstream 57667 29197131 ~ 29197363 (+) True G386815
TU439304 lncRNA upstream 57932 29196887 ~ 29197098 (+) True G386814
TU439294 lncRNA upstream 67118 29187621 ~ 29187912 (+) True LOC110523576
TU439295 lncRNA upstream 80231 29174348 ~ 29174799 (+) False LOC110523576
TU439069 lncRNA upstream 181867 29070812 ~ 29073163 (+) True G386606
TU439344 lncRNA downstream 14160 29276801 ~ 29277657 (+) True G386846
TU439428 lncRNA downstream 32537 29295178 ~ 29295389 (+) True G386918
TU439470 lncRNA downstream 102071 29364712 ~ 29364984 (+) True G386959
TU439473 lncRNA downstream 104916 29367557 ~ 29367678 (+) True G386962
TU439475 lncRNA downstream 114439 29377080 ~ 29377290 (+) True G386964
XM_036977220.1 mRNA upstream 67062 29174319 ~ 29187968 (+) False LOC110523576
XM_021602393.2 mRNA downstream 41696 29304337 ~ 29311723 (+) False mtfp1
XR_002473468.2 mRNA downstream 41696 29304337 ~ 29312328 (+) True mtfp1
XM_036977231.1 mRNA downstream 78637 29341278 ~ 29446180 (+) False LOC110523581
XM_036977232.1 mRNA downstream 80225 29342866 ~ 29446180 (+) False LOC110523581
XM_036977233.1 mRNA downstream 80225 29342866 ~ 29446180 (+) False LOC110523581
TU438959 other upstream 324099 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 837475 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1350299 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1547952 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1571637 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 479159 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 634345 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1024310 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2697714 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2957540 32220181 ~ 32220533 (+) True G390393

Expression Profile