RNA id: XM_021602422.2


Basic Information

Item Value
RNA id XM_021602422.2
length 2642
RNA type mRNA
GC content 0.50
exon number 9
gene id tbx5a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29741800 ~ 29763439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGCCATTGgtgcgtagagagagagagagtgagaggagggaggggagaaggtggTGACGGATCTGCTCCTCTGTAAACTTGCTATACTGCTATGTGCTATCAGCAGGGAAGGCTTCCCGAACAACGGTCATCGACTCTAAAATGTACAATAAAGTAACACCGCGTGGTTATTTTAGCCATCTTTGCTAGACTCCTGAATCTTCCTTCACCTGTGCGTTTTCGCTTGGTCACCGTACATTTGGACTTGCACTGAAGATAGAGAAAATCCATGGGGATATTAGATAGCCTTTTCGGGCTACACATTGGGATTATACATTGAATTGGGTGGACATTTTTCGCAAACACTTTGCATTTTTGAAGAAACGACCTCTGCTGTGCCATATCTTCACGACATTGAAAGTGACGTATCTGGTTACAAGTTGGGGCCTTGGTCTCCGGAGCTCCAGACATGGCAGACCAGAAGGAAACATTTGGACTGCAAAATTCGCCCAGCGGGTCAGAGTCAAAGGAGTTACACACTGAGAGTAAAGCAGAGAAACAAAATGGAACTTCGAGCAAATCTCCATCCTCCCAGACGACATATATTCAACAGGGAATGGAGGGGATAAAAGTGTACCTGCATGAGAGGGAATTGTGGGCGAAGTTTCATGAGGTGGGGACGGAGATGATCATCACCAAAGCGGGAAGGCGAATGTTTCCCAGCTTCAAAGTGAAGGTCACTGGATTGAACCCTAAAACGAAATACATACTCCTGATGGATGTCGTGCCTGCGGACGACCATCGCTACAAATTCGCCGATAATAAATGGTCCGTGACCGGGAAGGCCGAACCTGCCATGCCCGGGAGGCTCTACGTTCACCCGGACTCTCCTGCGACGGGGGCGCATTGGATGAGGCAACTTGTCTCTTTCCAGAAGCTGAAACTGACGAATAACCACCTGGATCCTTTTGGACACATTATCCTCAACTCCATGCATAAATACCAACCCAGGATTCACATCGTGAAAGCGGATGAAAATAATGGCTTTGGCTCCAAAAACACGGCGTTCTGTACCCACGTATTCCCCGAGACTGCCTTCATTGCGGTAACATCTTACCAGAATCATAAGATAACCCAACTTAAGATAGAGAACAACCCGTTTGCCAAAGGCTTTCGTGGGAGTGATGACATGGAGCTCCACCGGATGTCCAGAATGCAAAGcacTAAGGAATACCCAGTGGTCCCTCGCAGTACGGTGCGCCAGAGGGTGGGCACCAGCCAGAGCCCATTCAGTGGGGAGGTGCAGGTTATGGTCACTCCCAGTGGCCTGGCCTCCCAGTACACCCAGTGTGAGAATGGGGTCACCAGCACCTCACAGGACCTCCTGCCCCAGTCTGGCTGTTACCCCCTCCCCCACGAGCACAGCCAGGACTACCATTGCATCAAGAGGAAAGtggaTGATGACTGTCACTCAGGGGAGCACACCTACAAGAAGGCTTACCTGGAGAGCTCCTCCAGCGAGGACGACCATTACTACCGTCCCGTCAGCTACCCACAGAGCCTGGGCCTGCCCGGGGGGCCCTACAGGACCGAGTCTGGCCAGAGGCAGGCCTGTATGTACGCCAGCGCCTCCCAAGGGGCTGAGCCCGTCCCCAGCCTGGAGGACATCAGCTGCAACACCTGGGCCAGTGTTTCGCCCTATGGCAGCTGCTCCGTCACCTCCATGCAGCCAATGGAGCGGCTGCCCTACCAGCACTTCTCCGCCCACTTTACCTCGGGGCCCCTGGTGTCCAGACTGAGCGGGGTGGCAAGCCACGCCTCCACGCAGCTGGGCGAAGCCCACCACGCCATGTACCAGGGCCCCATGGCCCACCAGACACTGGGCCGCCAGTGTAGCCCTGGGGCAGGCATCCAGTCGCCCACCGCAGGTCTCCAAGGCAACGAGTACCTGTACTCGCATGGGATCCCGCGCACGCTGTCGCCTCATCAGTACCACACAGTGCACAGCGTCAGCATCATGCCAGAGTGGAATGAGAGCAGCTAAAATAACTTTCTTCATAGGAAAGGATGGAGAAGTTGGATAAAAAAAAGGCCCTTGATAAGGTTGGGCTTTAGATAaatctatatttatatttttgaagcAGTACAGTACGGCAGTGCAGTCTCATGAGATTAATGAGGCATGACCGCCTAGAGCATTGGACTTTGGTGCTCAGAGGAACTGCGTGACTGTCTTTGCAGTTGACTTCTTACTGTGCCTAAAGGCAAACATCATGAGGATGGGCAAAACAAGGTGGAGAAAAGCATTGGTCATGAAGGAGACTTATAAGGAAACTAAACAAGTTTAAAAACCCAATGCTTTTGCATGAGTAACAGAAGCACAGAAGTGGCTTCATCGGGAGACCCCTATTTTAAAACTGTTCTGTTTTGATAGTGTATTTTACATCTTGGTGTTGCAttatcaatgttttttttctgctgCCAATAGAAAGCTCTTTTACCTTTATCCTGTAGATTTGTAAATTTAACATTTTGTGAAAAAAAATACCTCCCAGTtttcattttatttgttttttttgttgtgaaCTGCTTACCttctatattgaacaaaaataaacgcaacatgcaacaatttcaactaaTATACTGAGTTAcaagttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439953 lncRNA upstream 29900 29711764 ~ 29711963 (+) True G387406
TU439952 lncRNA upstream 30154 29711303 ~ 29711709 (+) True G387405
TU439948 lncRNA upstream 35740 29705884 ~ 29706123 (+) True G387401
TU439946 lncRNA upstream 37910 29703734 ~ 29703953 (+) True G387399
TU439942 lncRNA upstream 46170 29695449 ~ 29695693 (+) True G387395
TU440040 lncRNA downstream 67409 29830848 ~ 29831142 (+) True G387484
TU440140 lncRNA downstream 211940 29975379 ~ 29976702 (+) True G387570
TU440125 lncRNA downstream 233039 29996478 ~ 30003512 (+) True G387556
TU440167 lncRNA downstream 269262 30032701 ~ 30077928 (+) True G387597
TU440218 lncRNA downstream 341884 30105323 ~ 30112442 (+) True LOC110524747
XM_036977236.1 mRNA upstream 19175 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA upstream 19175 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA upstream 19175 29712933 ~ 29722688 (+) False LOC110523583
XM_036977237.1 mRNA upstream 20627 29712928 ~ 29721236 (+) False LOC110523583
XM_036977239.1 mRNA upstream 20627 29713699 ~ 29721236 (+) False LOC110523583
XM_036977244.1 mRNA downstream 96170 29859609 ~ 29902923 (+) True LOC110523590
XR_005051713.1 mRNA downstream 341854 30105293 ~ 30108549 (+) False LOC110524747
XM_036977247.1 mRNA downstream 370233 30133672 ~ 30217715 (+) False LOC110524742
XM_036977246.1 mRNA downstream 370235 30133674 ~ 30217715 (+) False LOC110524742
XM_036977249.1 mRNA downstream 370235 30133674 ~ 30217715 (+) False LOC110524742
TU438959 other upstream 810932 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1324308 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1837132 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 2034785 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 2058470 27675352 ~ 27683393 (+) True LOC110522888
TU440079 other downstream 133547 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 523512 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2196916 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2456742 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 3395387 33158826 ~ 33162980 (+) True G391513

Expression Profile