RNA id: TCONS_00031008


Basic Information

Item Value
RNA id TCONS_00031008
length 360
RNA type mRNA
GC content 0.54
exon number 1
gene id XLOC_015508
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 29249204 ~ 29353179 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGCAGGAGTTCAAACATTGCGACTCTTTAACATGAGAGCAGCCAGCAGCCCTGCCTGTCTGTCCCCTCTGCTGCTGTGCCTATGTGTGCTCCAGAGGAGCTATGGGACCCCTTCTCCACCCAGCCCCACATTCAGCCACAACCAGACCAAACTGCCCAACGGCGACAAGGACTCGCACCATCGCCCCAAGCGAGGTTGGATCTGGAATCAGTTTTTCGTTTTGGAAGAGCACATTGGGCCAGATGCCCAGTATGTGGGGAAGGTAAGAGCTTTTGTTGATTGTTTCGATCTGTGCTCAGGTGTGCTTAAACCATGCAGGCGAGCTGAGCTGCTGGGTCTCGTGTGGTTTGTTAAGTGA

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007275 multicellular organism development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0034332 adherens junction organization biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016342 catenin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-316 Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell morphogenesis; and cell-cell junction organization. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Orthologous to human CDH18 (cadherin 18).

Ensembl:

ensembl_id ENSDART00000184362

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033552 lncRNA upstream 834455 28393943 ~ 28423487 (+) True XLOC_015503
TCONS_00033267 lncRNA upstream 907495 28245460 ~ 28350447 (+) True XLOC_015502
TCONS_00033266 lncRNA upstream 909621 28245460 ~ 28348321 (+) False XLOC_015502
TCONS_00033265 lncRNA upstream 1063334 28194138 ~ 28194608 (+) True XLOC_015501
TCONS_00031000 lncRNA upstream 1219317 27975554 ~ 28038625 (+) True XLOC_015500
TCONS_00031013 lncRNA downstream 453909 29712210 ~ 29727457 (+) True XLOC_015511
TCONS_00033553 lncRNA downstream 814378 30072679 ~ 30089989 (+) True XLOC_015516
TCONS_00031031 lncRNA downstream 868113 30126414 ~ 30126936 (+) True XLOC_015518
TCONS_00033268 lncRNA downstream 939069 30197370 ~ 30197741 (+) True XLOC_015521
TCONS_00031040 lncRNA downstream 1019033 30277334 ~ 30280504 (+) True XLOC_015525
TCONS_00031005 mRNA upstream 141050 28995776 ~ 29116892 (+) True XLOC_015507
TCONS_00031004 mRNA upstream 323658 28889936 ~ 28934284 (+) True XLOC_015506
TCONS_00031003 mRNA upstream 565014 28672179 ~ 28692928 (+) True XLOC_015505
TCONS_00031002 mRNA upstream 583497 28672152 ~ 28674445 (+) False XLOC_015505
TCONS_00031001 mRNA upstream 736513 28453338 ~ 28521429 (+) True XLOC_015504
TCONS_00031010 mRNA downstream 233013 29491314 ~ 29692825 (+) False XLOC_015509
TCONS_00031011 mRNA downstream 351813 29610114 ~ 29692819 (+) True XLOC_015509
TCONS_00031012 mRNA downstream 452556 29710857 ~ 29711761 (+) True XLOC_015510
TCONS_00031014 mRNA downstream 537532 29795833 ~ 29896572 (+) False XLOC_015512
TCONS_00031015 mRNA downstream 584577 29842878 ~ 29883078 (+) False XLOC_015512
TCONS_00030997 other upstream 1399108 27857688 ~ 27858834 (+) True XLOC_015497
TCONS_00030985 other upstream 1857025 27394840 ~ 27400917 (+) False XLOC_015492
TCONS_00030980 other upstream 1933761 27321014 ~ 27324181 (+) True XLOC_015489
TCONS_00030976 other upstream 2247597 27000542 ~ 27010345 (+) True XLOC_015486
TCONS_00030971 other upstream 2585095 26667680 ~ 26672847 (+) True XLOC_015483
TCONS_00031016 other downstream 588091 29846392 ~ 29864340 (+) False XLOC_015512
TCONS_00031038 other downstream 1011005 30269306 ~ 30270163 (+) True XLOC_015523
TCONS_00031039 other downstream 1017916 30276217 ~ 30277062 (+) True XLOC_015524
TCONS_00031062 other downstream 1528482 30786783 ~ 30832975 (+) False XLOC_015538
TCONS_00031070 other downstream 1657887 30916188 ~ 30921476 (+) False XLOC_015542

Expression Profile

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