RNA id: XM_036977711.1


Basic Information

Item Value
RNA id XM_036977711.1
length 2826
RNA type mRNA
GC content 0.57
exon number 18
gene id add1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 47163745 ~ 47217644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCGCACCCACGTGAGAGGGTCCATGCTTTCCGGAATCCTTGGGACGTCACAACTCTGACGTTGCCCTATTGAAGTTGACATGTAAAATGGTTAACGTTAGGTAAGGGTTACGGTTGTGGTAAGGTAAggttagggacgtcccaaggatgcCAGAAAGAACTAACCCAAGTGAGAGGGCGGTAGTTGGGCGGAGCGTCGCAGTAACTACAAGCAGAACCAGACCCTTTTGAAAGCACAGCGGATAGAAATTGTGAAAATAGCAGGCTCGCTATCTAGAAGAAGGTGCTGTCTTTCCAACCATATTTCGAATAAACGAGGGAGCCAACAGACCTGGTGATGAACGGTGACTCAGGTGCTGGGGTGGTGACTGCCCTCCCGCCCACCACCGCCCCCCACAAGGAGCGCTACTTTGACCGTGTGGATGAAAGCAGCCTAGAGTACCGGCGTGAGAGAAACATGGCTCCAGACCTCAGACAGGATTTCAACATGATGGAGCAGCGGAAGAGGGTCTCCATGATCCTGCAGAGCCCGGCGTTTTGTGATGAGCTGGATACGATGATCCATGACCAGCTGAAGAGGGGAAAGACCCCCACCAGCCTGTTGGCCCTGCAGCAGATAGCTGATTTCATGACCACCAGTATCCCAACCATGTACCCTGCAGCGCCACAAGGAGGCATGGCTGCACTCAACATGAgtcTGGGTATGGTAACTCCAGTGAATGACTTACGTGGATCTGACTCTATCTCCTATGAGAAAGGAGAGAAACTGCTTCGTTGTAAGCTAGCTGCCTTCTACCGCCTGACAGACCTCTTTGGCTGGTCCCAGCTCATCTACAACCACTTAACCGTCAGGGTGAATTCAGATCAGGAGAGGTTCATTATTGTCCCTTTTGGGCTTCTGTACAGTGAAGTCTCCGCCTCCAGTCTGGTGAAGATTAATATGCAAGGGGAGATTGTGGACCGGGGGAGCACCAATCTAGGGGTCAACCAGGCTGGCTTCACTCTCCACTCAGCCATCTATGCAGCCCGGCCAGACGTTAAGTGCATTGTGCACGTCCACACACCGGCAGGAGCTGCAGTGTCGGCCATGAAGTGTGGCCTGTTACCCATCTCTCCAGAGGCCCTGACCCTGGGGGAGGTGGCTTACCATGACTATCACGGCATCATCATAGACAAAGAGGAGAACGTCCTCATACAGAAGAACCTGGGGCCAACCAGCAAGGTTCTGATCCTGAGAAACCATGGTCTGGTGTCTGTTGGGGAGACTGTGGAGGAAGCCTTCTACTATATCCACAACCTGGTCACTGCATGTGAGATCCAGgtgcgCACCCTAGCCAGTGCTGGAGGACCTGGTAACCTGGTGATGCTGGACCCTGCTAAGTACAAATCCCGGCCACGGTGCTCTGAGCATGTCGAGGGCTCCAAACACCCGAAATGGCTGGTCGGGGAGCAGGAGTTTGAGGCTTACATGAGGATGCTGGATAACCTGggtTACAGGACAGGCTACCCCTACAGGTGCCCTGCCCTGCGAGACAAAGCTAAAAAGTTCAGCAGCGACATAGAGATCGCTCCCTTGGCCACGGGCTATTCCTATGCCGAGGACAGTGACTCGGGCGCTCGCTCCCCTCTCAAGCACAGCTTTCAGAGGCAGCAGCGTGACAAGACCCGCTGGCCCAACTCGGGCCGGCCGGAAGAGGCCTACGAGGAAGGGCCCGACAGTGGCAGCCCCAAGTCGAAGACTAAGTGGACGAATGAGGAAGGGATGCGACAGGCTGCAGTAGCCAATCAGTTTGTCCCGCTCAACACAAACCCCAAGGAGGTGCTGGAGATGAGGAACAAGATCCGAGAGCAGAACCTTAAGGACATCAAGACTGCAGGGCCTGAGTCCCAGGTGCTGTGTGCTGGAAGCATTGTGGACCGCTCCTTTGTCCAGGACGCCCCTCTGTCTGACTGTACGGACACTATTGCCAGCCTCGATCTGTCAGAGGCCAATAGTCCTGCTAAGTCTTTTAGAAAGGGTGAGCTGGTGACAGCGTCTAAGGCCATCATAGAGAAGGAGTACCAGCCCAGAGTCATCATCAACCAGAAAGGCCCCAACCCCTTCAACAAGCAGTTCGACCAGGAGCTGGAGGAATACCGCAAGGAGGTGGAACTCAAACAGAAAGGACCCGATGTACAGGGTGAAGGGTCCTCCACAGCCAGGACACAGCTCCCTTCACCTGGGCCTGGGGAGGGAGGCctgtccccctctacctccccacaGAAGCCTGCACTGAAGCCAAAGCCCCGCTGTGTCCCAGAGAAGGGACTGGATGTTTCAGAGACCCCCCCCACAGCCTCCACGGccacccctaccaccaccacctctttCCCCAGCGGGGACACCCTGACACAGCCGGGGGATGGTCAGGAGAGCCCTGGGACGTCCACAGGGTCGGGGCCCAGGGCCTACGGGGGAGATTCCCGCCCAGAGTCTCCTCACAAGGATTTTCACTGTGCCGTGCTGAAGGCCCTCAGAACCACCAACACAGAACTGGCTGCCCTCACCCTCCTTGAGGCTCCAGATGCGTTACCGGAGCCTGAGGAAGAGGTGAAGGGTCAGAGTCAGACCTGCACGCCCCCCAGCACCCCTGTCAGAGCAGAGGAAGGAGATGGAAATGCTAGAGAGTACCTGTTGCCATAGTAAAGCCCCAGCCGGAGCACACCTATAAGTATGAGAGTGACCAGGCTCCACTGAGACAGACCCTCCCTGACCTGACCCAAGACGACGAACCCTCCGCCACCCCTGCCCCCACCCTCCCCGCCAAAGACCCCACTCCTGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU462332 lncRNA downstream 47417 47118115 ~ 47118346 (-) True G407564
TU462331 lncRNA downstream 47808 47117697 ~ 47117955 (-) True G407563
TU462328 lncRNA downstream 51828 47113729 ~ 47113935 (-) True G407560
TU462288 lncRNA downstream 77077 47088476 ~ 47088686 (-) True G407536
TU462286 lncRNA downstream 83535 47082010 ~ 47082228 (-) True G407534
TU462519 lncRNA upstream 156806 47374446 ~ 47374718 (-) True G407726
TU462520 lncRNA upstream 157403 47375043 ~ 47375295 (-) True G407727
TU462522 lncRNA upstream 160397 47378037 ~ 47378244 (-) True G407729
TU462523 lncRNA upstream 162011 47379651 ~ 47380076 (-) True G407730
TU462560 lncRNA upstream 205700 47423340 ~ 47423551 (-) True G407758
XM_021603156.2 mRNA downstream 4301 47128601 ~ 47161462 (-) True nop14
XM_021603157.2 mRNA downstream 4302 47128601 ~ 47161461 (-) False nop14
XM_021603158.2 mRNA downstream 4359 47128601 ~ 47161404 (-) False nop14
XM_036977696.1 mRNA downstream 555449 46572673 ~ 46610314 (-) False LOC110523962
XM_036977695.1 mRNA downstream 555450 46572673 ~ 46610313 (-) False LOC110523962
XM_021603172.2 mRNA upstream 312782 47530422 ~ 47662668 (-) False LOC110523973
XM_021603173.2 mRNA upstream 316749 47534389 ~ 47662667 (-) False LOC110523973
XM_021603175.2 mRNA upstream 316749 47534389 ~ 47662667 (-) False LOC110523973
XM_021603174.2 mRNA upstream 316749 47534389 ~ 47662668 (-) False LOC110523973
XM_036977719.1 mRNA upstream 316749 47534389 ~ 47662669 (-) False LOC110523973
TU461500 other downstream 555648 46604229 ~ 46610115 (-) True LOC110523962
TU461254 other downstream 931226 46219667 ~ 46234537 (-) True G406588
TU460699 other downstream 1141923 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 1176280 45982838 ~ 45989483 (-) False G406076
TU460459 other downstream 1552808 45612428 ~ 45612955 (-) True G405889
TU463578 other upstream 1004312 48221952 ~ 48223220 (-) True G408664
TU463710 other upstream 1135662 48353302 ~ 48357240 (-) False G408782
TU463712 other upstream 1136008 48353648 ~ 48357240 (-) False G408782
TU463709 other upstream 1136071 48353711 ~ 48357240 (-) False G408782
TU463711 other upstream 1136071 48353711 ~ 48357565 (-) True G408782

Expression Profile