RNA id: XM_021603175.2


Basic Information

Item Value
RNA id XM_021603175.2
length 2371
RNA type mRNA
GC content 0.57
exon number 13
gene id LOC110523973
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 47530422 ~ 47662670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCCAAGCCTCCACGTACACATGTCCTGCGAGCAAACCGGACTAAACGTCACATTCATGCGTTTCCCCTGCTTGTGTGTCTGGGAGCGTAATCTTTTCCTTCCGAATACGTTTCTCTCTCGAGAAATATACCCATGACACAGTGGGTTTAATATCAGGAGGTGATCCCGGATTCCCCAGCCGTCCGAATCCAATATCTGGgtcctctcctccctcccccgccGGCGGGCAGGCAGCAGGTTGCCATGGAAAACTCGTCGGTGGCCTCCGCATCCTCAGAGGCGGGCAGCACGCGCTCACAGGAGATTGAGGAGCTGGAGCGCTTCATCGACAGCTACGTGCTGGAGTACCAGGTGCAAGGCCTTCTGGGAGACAAAAACGAGACGTACCTGGACGGAGACAACAAACCCCAGTCCCACATTTCACAGGATGAGTGGGATCACAGTAGTAATGGCAGTACAGGGTCCAGGCCCAGCTCTGGCTCTAGACCTGGTTCTGGCTCAAGGTCTGGTAGCAGGGGGAGGAACAACCAATTCAGAGGGCCAGCCAAGGTACAGAACGGGAACAGAGAAGGGTCCTTTGACATCCTGGGTACTGACATCTGGGCTGCTAACACCATGGACTCTCATGGGGGGGCAACATGGGACCTCCAGCCTGAGAAGCTGGACTTCAGCCAGTTCCACAGGAAACCCTTCCGGGGAACACCAAAGCACCTTCCACAAATCGACAGAGAGGGATCTGAAAGCCCATACATCCCTCCCATTGATCCTCTTCCATGGGATAAACATGACAATGATGATGCTGGTCCATTCCATTACTACTTAGAACTGATGATGAAAGGCAAGTTTGAATATGATGATGGGATCAACTTGAACGACATGGAGCAGTTCCTGCCAGGCCTTACCGGTTTCCCGCCCCTGCCTAACGAAGCTGAGATTGCCCAAACCAAAAAGCTTTTCCGTCGCAGGAGGAACGACCGACGGAGACAGCAGCAGAGACCaccggggggaggaggaggagacaggaagacccagcagcagcagtcgccacaacaacaacaacaaacagtcAATCAACATCCTCGTGACCAGCAGCAGCACAGAGGACAGTGTGGGGCTAGCCATGGGCAGCAGTTCCAGGGCCACGGCGGGCAGCGCCAGGGGCCCCTCCACCATGGCTACAGCCAGAACCGCCGCTGGCACCACAACCAGCAGGGGCAGGGAGGAGAACAGGGACCGCAGGGTGGCCCGGCagtggacagagacaggggggcAACCCCAACGGGAGACAGAGACAAGGAGGCACCACCCAGAAAAAACAAAGAGACTGATGATGTAAAGGCAGAGGAGGCCAGCGCTAGGCTGGAGCCAGAGAGCTCAAGGGGCCCCAATGACGGGCCTCCCAGCCAGCCCTGGGGCCAGGGTGGCCCTAAAGTCCGTCTTCTGCCGTCGTCCaaagagaggctgaggaggaggctAAAAGACGAGGAGGAGGCGATTGTGTCCCCAGCGGGCCCCCAGCGGAGCCGCATGGACCGCTTGCTGGAGATCCTGAACAGCATGAGGAACAACAGTGCCGGGGTGGACGGCCAGCTCAGCTCCTTCATGGAGGAGGCCCAGACCTCGACCCAGTCAGAGGAGAGCCTGGCCCAGATCGTCTCTACTATCTATAGCAAGGCCCTCAGCGACAGAAGCTTCGCCGCTTCCGCTGCCAGACTCTGTGACAAGATGGCCCTGTTCATGGTGGAGGGGACCAAGTTTAGATCATTACTACTCAATATGTTACAgaAGGACTTCTCTCGTCGGGAGGAGCTGCAGGCATCTGACGTGGAGCGCTGGTTGGGGTTCATCACCTTCCTGTGTGAGATGTTTGGCACAATGAGGTCCAGTGCTGGAGAGCCCTTCAGAGTCCTGGTCTGTCCCATATACACCTGTCTCAGAGAGCTGCTGGAGTCTCCAGAGGTGAAGGAGGATGCGGTCCTCTGTTATTCTATGGAGCTGCAGTCCACTGGTCGTCTCCTGGAGGAGCAGCTTCCAGAGATGATGACAGAGCTCCTGGCTGCGGCCAGGGACAAGATGCTGTGTCCAGCCGAGTCCCAGCTAACTCGCTCCTTGCTCATGGAGATCATCGAGCTGCACGCCAACCACTGGACCCCTCTGGAGGACCTCACCACACAGTACTACAACAGGACCATCCAGAAGCTCACCACCGCCTAGCCCCCCAGACCCAGGACCTGTCCCACAGGTCAGGCACATGGAGGCCTGAGCTGGGTTGATGGCTGGGATGCATGGGGCTGGACTAGACATGGGACTGTACAGAGTCGCAGAACATAATTGGTTGGCCCCATACCAGACAGCAAATGCGTTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU462614 lncRNA downstream 47787 47486370 ~ 47486602 (-) True G407811
TU462603 lncRNA downstream 56662 47477497 ~ 47477727 (-) True G407801
TU462595 lncRNA downstream 62760 47471356 ~ 47471629 (-) True G407793
TU462585 lncRNA downstream 74279 47459741 ~ 47460110 (-) True G407783
TU462583 lncRNA downstream 77823 47456081 ~ 47456566 (-) True G407781
TU462894 lncRNA upstream 12270 47674937 ~ 47675639 (-) True G408064
TU462897 lncRNA upstream 14250 47676917 ~ 47677124 (-) True G408067
TU462901 lncRNA upstream 16869 47679536 ~ 47680070 (-) True G408070
TU462925 lncRNA upstream 32538 47695205 ~ 47695437 (-) True G408094
TU463260 lncRNA upstream 86247 47748914 ~ 47754152 (-) True G408406
XM_036977707.1 mRNA downstream 316745 47165763 ~ 47217644 (-) False add1
XM_036977708.1 mRNA downstream 316745 47165763 ~ 47217644 (-) False add1
XR_005051749.1 mRNA downstream 316745 47165765 ~ 47217644 (-) False add1
XM_036977709.1 mRNA downstream 316745 47165774 ~ 47217644 (-) True add1
XM_036977711.1 mRNA downstream 316749 47165763 ~ 47217640 (-) False add1
XR_005051947.1 mRNA upstream 32963 47695630 ~ 47695682 (-) True LOC118964754
XM_021603191.2 mRNA upstream 164134 47826801 ~ 47910075 (-) False LOC110523975
XM_021603184.2 mRNA upstream 164134 47826801 ~ 47910076 (-) False LOC110523975
XM_021603180.2 mRNA upstream 164134 47826801 ~ 47910078 (-) False LOC110523975
XM_021603188.2 mRNA upstream 164134 47826801 ~ 47910079 (-) False LOC110523975
TU461500 other downstream 924274 46604229 ~ 46610115 (-) True LOC110523962
TU461254 other downstream 1299852 46219667 ~ 46234537 (-) True G406588
TU460699 other downstream 1510549 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 1544906 45982838 ~ 45989483 (-) False G406076
TU460459 other downstream 1921434 45612428 ~ 45612955 (-) True G405889
TU463578 other upstream 559285 48221952 ~ 48223220 (-) True G408664
TU463710 other upstream 690635 48353302 ~ 48357240 (-) False G408782
TU463712 other upstream 690981 48353648 ~ 48357240 (-) False G408782
TU463709 other upstream 691044 48353711 ~ 48357240 (-) False G408782
TU463711 other upstream 691044 48353711 ~ 48357565 (-) True G408782

Expression Profile