RNA id: XM_021603201.2


Basic Information

Item Value
RNA id XM_021603201.2
length 2663
RNA type mRNA
GC content 0.49
exon number 14
gene id nup54
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48106327 ~ 48125678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgagagaggcaggttgaggtttccagggttatagtagtgcagaggttgtcatatgctgaggcagtgaagaaagtagggGAAGAAGGGTCaaggatcctgagaggagtggtgtgagtagatCGGTACCAATACAGAGGGATAAACCAACAAGTGATATATGTTTCAGttagcatttatagcaatggttatgaactgtactgcagggatggaatgtAAGTCGCAGAAAATTGAGGTTGCGGTGGCAGatgcagagaggtatttgggtgtgcgagactgaacgtcagaagagttacagggtgtgttaagtggtggtgtcccatcctttcaggctGTTGGCCTGAAGTAGGACTAAATATATTTAAACATTGGAGTATGCTGTTTTTTGTGAGTGCAGTGTTAGATAGTAgggtatttgtttatttgtttaaaaaaattaaagcAAAGTTATAAAGCagttatactccagtctagtaggtggctgtaatgcaacatttattggatgccaaccaccATTAAACCTcatcaaagaagaagaaaaatttATTTCGCGGAACTATACAATCCAACGACACTTCCTGCACGGACCCAATTTGCTGTGAACAGGAGTAATCATGGCGTTCAACTTTGGCGGCGCTGCCACCAACCCAGCAACAGGTCTTGCAGTCCCTGGTTTCGGGACCACCACCACTGCTGCGGCCCCCGCTGGCTTCGGCGGCTTCGGCACCACCACCACAGGATTTGGGGGGCTAGGAGCCGGGAGCACCACGTCTGGTGCTTTTGGGGGTTTTGGGACAACCACTACATCCGCTGCTGCGCCTGGGTCAACTTTCAGCTTCGCCGCTCCTGCAAGCACAACAGGAGGACTGTTTGGTAATACCCAGAATAAGGGATTTGGGTTCTCCTCTGGGCTGGGCACTGGCACTACTGCTGCAGCTGGGTTTGGAACAGGTCTGGGGACAACTCTAGGAGGTGGATTTGGTGGCTTCAATATCCAGCCACAGCAGCAACAGCAAGCTAACGCCCTGTCTGCCCCCACCCTGCTTGGGGACGAGAGAGATGCCATCTTGGCCAAGTGGAATCAGCTCCAGGCCTTCTGGGGAACAGGCAAGGGCTATTTCAACAACCAACTCCCCCCTGTAGACTTCACACAGGAGAACCCTTTCTGCAGGTTCAAGGCGGTGGGCTACAGCTGTATCCCAGGCAGTAAGGATGAGGATGGTCTGGTTGTCCTGGCCTTCAATAAGAAGGAGGCTGATGTTCGTAGCCAACAGCAGCAGCTGGTTGAGTCTCTACACAAGGTGCTGGGAGGGAACCAGACTCTCACCGTCAACGTAGAGGGAGTCAAAGCCCTGCCTGATGACCAGACGGAGGTGGTGATCTATGTGGTGGAGCGTTCTCCTAACGGCACATCTAAGAGGATCCCAGCTACAACATTGTACAGCTATGTAGAGCAGGCTAACACTAAGGCCCAGCTCACACAGCTAGCAGTTTTCATGTCTGTTACACGCACTGAGCTCTCACCAGCACAGCTCAAACAGCTGCTGGCGAATGCACCAGCAGGAGTGGATCCCATCATTTGGGAACAGGCAAAGGTGGATAACCCTGATGCGGACAAGTTGATCCCCGTCCCCATGGTTGGTTTCAAAGAACTACTCCGCAGACTGAAGATTCAGGACCAGATGACCAAACAGCACCAGTCCAGAGTAGACATCATCTCTAATGACATCAGTGAACTGCAGAAGAACCAGGCAACAACAGTGGCTAAGATCGCTCAATACAAGAGGAAGCTGATGGATCTCTCTCACAGAGTACTACAGgtgctGATCAAGCAGGAGATTCAGAGGAAGAGTGGCTATGCCATCCAGGTAGATGAGGAGCACCTAAGAGTGCAGCTGGACACCATCCAGTGTGAACTCAATGCCCCCACGCAGTTTAAGGGGCGTCTGAACGAGCTGATGTCTCAGATCCGGATGCAGAACCACTTTGGGGCGGTGCGCTCAGAGGAACGATATAGTGTGGACGGAGACCTTCTCCGAGAGATCAGACAGCACctgaagcagcagcaggagggtCTGAGTCAGCTTATCAGTGTGATCAAAGATGACGTGGAAGACATCAAACTGATAGAACATGGCCTCCTGGACAGACTCGGCTGACCTCAAAGGTCCTCCCAGGCCCCACGtgaccctgaatctctctctcactgctgaCAAAAGTTAAAGGTTTATGCCTCTTCTTAGCAAGGCATATATCTGTATTTTctatggtctgtctgtcttcaatTCAGAGGTGCTTTCTCACACAGATTAATCCTTGTCCTGGCTAATGGCTCAATATTGAATCTCAATCAAAAAtcctttttagtccaggactaggtatAATTTTTGTCTTGGAAACTGCCCCTAAAATCCCCaaacatctaaactggaacaagaCTGCCTTAGAAAAACTGCCAGACCGTCTGGTGGACACTCTGGTTGACAGCCAGTGAAATGTGACTGTTTGATGATTTGGTGTGATATTCAAGTGCGATATTCAACACATTGTAAATAAATACGCCTTTTATTATTGCTTTAGTAATATTTTATATGATTGAATAAGAATTATACACAACCCCAACATGGTTTAATAAAATGTCATTGAGGAGCCTTTTTCAACATGA

Function

GO:

id name namespace
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14308 NUP54, NUP57; nuclear pore complex protein Nup54

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463501 lncRNA downstream 3758 48102108 ~ 48102569 (-) True G408591
TU463496 lncRNA downstream 4334 48100332 ~ 48101993 (-) False G408591
TU463499 lncRNA downstream 4912 48100586 ~ 48101415 (-) False G408591
TU463462 lncRNA downstream 38256 48054088 ~ 48068071 (-) True G408560
TU463464 lncRNA downstream 46982 48056814 ~ 48059345 (-) True G408561
TU463536 lncRNA upstream 37912 48163590 ~ 48164373 (-) True G408623
TU463576 lncRNA upstream 91794 48217472 ~ 48218065 (-) True G408662
TU463577 lncRNA upstream 92448 48218126 ~ 48218459 (-) True G408663
TU463581 lncRNA upstream 94596 48220274 ~ 48220492 (-) True G408666
TU463579 lncRNA upstream 97622 48223300 ~ 48226856 (-) True G408665
XM_036977728.1 mRNA downstream 76651 48027781 ~ 48029676 (-) True LOC110523978
XM_036977722.1 mRNA downstream 196082 47853162 ~ 47910245 (-) True LOC110523975
XM_021603190.2 mRNA downstream 196235 47826801 ~ 47910092 (-) False LOC110523975
XM_021603215.2 mRNA upstream 299187 48424865 ~ 48447883 (-) False LOC110523983
XM_021603214.2 mRNA upstream 299187 48424865 ~ 48447888 (-) False LOC110523983
XM_021603219.2 mRNA upstream 414404 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 414404 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 414404 48540082 ~ 48544432 (-) False pdcl
TU461500 other downstream 1496212 46604229 ~ 46610115 (-) True LOC110523962
TU461254 other downstream 1871790 46219667 ~ 46234537 (-) True G406588
TU460699 other downstream 2082487 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 2116844 45982838 ~ 45989483 (-) False G406076
TU460459 other downstream 2493372 45612428 ~ 45612955 (-) True G405889
TU463578 other upstream 96274 48221952 ~ 48223220 (-) True G408664
TU463710 other upstream 227624 48353302 ~ 48357240 (-) False G408782
TU463712 other upstream 227970 48353648 ~ 48357240 (-) False G408782
TU463709 other upstream 228033 48353711 ~ 48357240 (-) False G408782
TU463711 other upstream 228033 48353711 ~ 48357565 (-) True G408782

Expression Profile