RNA id: XM_021603215.2


Basic Information

Item Value
RNA id XM_021603215.2
length 1987
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110523983
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48423554 ~ 48489102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagaagaagaagaatctTTGCTGACGACATAAGAAAAATAAATTAATGCACTCGAAATGATTATCAGTCTTAGTTGTTTAAGTTCGGATATTGATTGAACGAACAGTACACGGATCCTATTGTTATCGATGTGCCTCTGAATCGTATCTGTGtcaacaagctagctagctaatttagctatACATCATTAATTGAGTCTGTCACTGTCAGTCTGATCTAGCTCGTCGATCATAGTTAAGATGTGTTGCAGCTTTTGAAGATAGTTACCTCTGTACTTTTTGTCTCAAATATGAACTTGTAAGTCGGAAAACGAATCAGACAATAGAGAATGTCAGGTTAGCATTGTAAACAACAGCAGCGAATAACCAGTCAAACATCACATCATCATGGAGGATGAGGAAGATCTCGAGGTACTTGGCGAACAACTGTACGATTTAATTTACCCCAAGCACGCTGAGATCGCCGGGAAACTCACAGATGGCATTGTAATTGGGTCGGAGGCATGTTGCTGGAACTACCTGGTCCTGTCCTGACTCGGATGCAGCAGGATGAAGCGATGCTGACAGAGGCCCTTGAGAAAGCCCTCAGAGCTCTGCAACTACCTCAGGGCCCCAGCAATACAAGGATGTCAAAGGAGGAAGATGAAGCATCTGCCTCTTCTGACTCGCTTGGGGAACAGCTGTTTGAGCTCGTGGACATCTACAACACTGGCCACACACAGAAAATCACTGGCATGCTACTGGAGCAGCATAAAGAAGCGGTGCTGCATCTTCTCTCAGAACCCTCACTACTGGAGGAGCAGGTGAACCTGGCCTTGAAGACACTGCAGCAGCTGGGTGTGGAAGAGACAGATGTGAGTGACTCATCAGATGCCGATGACACAGAGAGGCTGGAAGAGAGGCTGTTTCTACTGGTGCAGGAGATGGACGCAGTGCACTCAAATGACATTACAGGCATGCTTTTGGAGATGGACCCTGCAGCTCTCAGACAGATGCTGAACGACCGCACCATGTTGGAGGGAGCCGTTCAAAAAGCACAAGCAGCGCTGGAAAGCATTTGGATCCAAGAGGACAAAGAAATCACCAAATCCAAATGAAGTTGGCCCAAATACTGTGACATTTCAGCTGAAGAAAACTACTTTATGAACACAAGAACATTTATGTGCCACTAACCCACAGGATCATAGCTGCCATGAAGGGatgtatgtatatactgcattctaaGTGGCGATTCCTGATTTCAGATATTTTTCTCACTCCAACACTTGTCAGTGACTTGTTTCGGAGTGCAATGCACTTTAGTTAAGGCCACACTCATGATTGGACAGGAAGGGGAATATGAGCCAGTGAAGTGTGCTGCGACGCCCTCACACACTTGCTAAAAATAAAACCAGGCACCCTACACTTCTTGAAATATACATGCAAATGCTCCTTTAGACTGCAGACTTCAGGAGTGGAGAATGGAACAGGCCTAtagtctttttttttgttgcttccaATGCTATAGGAGAATTTGACAACTGTCTGGGTTGATTGGATTTTTCTACTTGCCAGAGTTGTCAATGAGGGATAGGTAGTGCTGGTCCAAAATACTTTAATCTGTGAGAAAGTAACTACATCTGTAGTGCCACAGTGATGCCAACAGACTTGCACACATTTTAGGTCCACTGGTAGTTTGGGGGATATTTGTTTGTACTTCACTCAATAATAAAATTGAATTCAGTAACATTACACAAATATTAAAATATTCCATATTCAGACACTTGTTGGGCCAACTGTTGGGATGTACTGCAATAATGTGTGAATAGGAAATGTATTTTGATATGTAGATAAAACACAACATGATGAACCTTGGATACTAATCAGACAGAACAAAATTAAACATTCTTTCAAAGTGCTAAAGAGCGCAAAGATATCTTTATTTATTACCATTTTACAGGGTTGAATTCCAAAACAGGAAAAATCAACAGCTTTTCTCAGACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463756 lncRNA downstream 9131 48415341 ~ 48415734 (-) True G408826
TU463755 lncRNA downstream 9608 48414975 ~ 48415257 (-) True G408825
TU463753 lncRNA downstream 10880 48413254 ~ 48413985 (-) True G408823
TU463754 lncRNA downstream 12720 48411664 ~ 48412145 (-) True G408824
TU463751 lncRNA downstream 23386 48401165 ~ 48401479 (-) True G408821
TU463790 lncRNA upstream 33915 48481798 ~ 48484591 (-) True G408855
TU463827 lncRNA upstream 61654 48509537 ~ 48509835 (-) True G408873
TU463829 lncRNA upstream 65737 48513620 ~ 48513830 (-) True G408875
TU463799 lncRNA upstream 84539 48532422 ~ 48537040 (-) False G408856
TU463800 lncRNA upstream 84539 48532422 ~ 48535726 (-) False G408856
XM_021603201.2 mRNA downstream 299187 48106327 ~ 48125678 (-) True nup54
XM_021603199.2 mRNA downstream 299188 48106327 ~ 48125677 (-) False nup54
XM_021603202.2 mRNA downstream 299188 48106327 ~ 48125677 (-) False nup54
XM_021603203.2 mRNA downstream 299188 48106327 ~ 48125677 (-) False nup54
XM_036977729.1 mRNA downstream 299188 48106327 ~ 48125677 (-) False nup54
XM_021603219.2 mRNA upstream 92199 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 92199 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 92199 48540082 ~ 48544432 (-) False pdcl
XM_036977745.1 mRNA upstream 92199 48540082 ~ 48544432 (-) True pdcl
XM_021603223.2 mRNA upstream 126867 48574750 ~ 48580663 (-) True pdxp
TU463711 other downstream 67300 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 67625 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 67625 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 67625 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 201645 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 1086033 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 2171008 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 2274431 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 2275276 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2731875 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile