RNA id: XM_021603221.2


Basic Information

Item Value
RNA id XM_021603221.2
length 1372
RNA type mRNA
GC content 0.53
exon number 4
gene id pdcl
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48540082 ~ 48544432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTATCTCCCCCTTTCTCTAATATCTCTGGCAGAGCAGCCCAGGCAGATCCATTGCTAAATGTTGCTATCGATACTCAGACTCACAGCCACCATGAGTAGAGTCTATGCAGAGGGAGCTGCCTGCACACAGGGAGCGATcgaatgacagacagagaggagcagcTAATGGGTTTACTAACAAAGGAAGCTATTTCTGATTTCCGGTTTCGGCCAGGCCTTACATTTGGTTGAAGCAATCAGTTAGGTGTGAAGTCATGACAACGTTGGATGACAAGATCCTGGGGGAGAAGCTGCAGTACTACTACAGCAGCAGTGAGGATGAGGAAAGTGACAAGGAGGATGACGAGGGGGAGCACAAGACCATCCGCAACCCAGATGTACTGGAGCCTGAGCTAGAATACAGCGCTGACGGTAGTGCCATcaacacagGGCCCAAGGGGGTGATTAATGACTGGAGGAAGTACAAACAGCTGAAGGTGGAGCAGAAGCAGGAGcagaaggaggagatggagagactcATCAAGAAGCTGTCCATGACCTGTCGCTCCGACCTGGACGACGAAGCCGACGCCATTAAACAGAAAGAGATGCAGGACAAGATCCAACACAAGATGACCATGCAGGAGTACAACATGCTCCAGGAAGACGAGGATGACGAGGACTTCCTCCAGCAGTACAGGAAGCAGCGCATCGAGGAGATGCGCCGGAAGGTGTTGCGCGGTAAGCGCTTCGAGCAGGTCTACGAGCTCAACAGTGGCGAGGAGTTCCTGGAGGCTGTGGACAAGGAGGACAAGGCCTGCCTGGTTATGATCCACATCTACGAGGGCGAGGTGCCTGCCTGCGAGGCAATGATGGGCAGCCTGCTGTGCCTGGCACAGGAATACCCCCTGGTCAAGTTCTGTAGCGTGCGTGGGTCGGTTATCGGCACCAGTGCCCAGTTCAGGGGCAGCGCCTTGCCAGCCCTGCTGGTGTACAAAGGAGGAGACCTGATTGGGAACTTTGTGCGCATCACAGACCAGCTAGGAGAGGACTTCTATGCTGTGGATGTGGAGGCGCTGCTGCAAGAGTACGGGCTGCTGCCGGACAAAACTGTCCTTGTCGCTAAGACCATCCGCAACGGCGCCATCACACAGAGCGATGACTCTGACCTTGACATAGACTAGAGAACAGACCTGCACATATATAGAAACATAGACTAGAACCTCTATGTGTACACACACTCGACATAGACTAGAACCCCaatgtgtaaacacacacacacagtcgacagactagaacccctatgtacacacacacagtcgacagactagaacccctatgtacacacacacacagtcgacagactagaacccctacgtacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463803 lncRNA downstream 3042 48532422 ~ 48537040 (-) False G408856
TU463807 lncRNA downstream 3042 48532422 ~ 48537040 (-) False G408856
TU463808 lncRNA downstream 3042 48532422 ~ 48537040 (-) False G408856
TU463809 lncRNA downstream 3042 48532422 ~ 48537040 (-) True G408856
TU463802 lncRNA downstream 4356 48532422 ~ 48535726 (-) False G408856
TU463845 lncRNA upstream 637 48545069 ~ 48545365 (-) True G408891
TU463848 lncRNA upstream 7792 48552224 ~ 48552468 (-) True G408894
TU463849 lncRNA upstream 8455 48552887 ~ 48553199 (-) True G408895
TU463870 lncRNA upstream 40995 48585427 ~ 48585672 (-) True G408912
TU463872 lncRNA upstream 42090 48586522 ~ 48586734 (-) True G408914
XM_021603214.2 mRNA downstream 92194 48424865 ~ 48447888 (-) False LOC110523983
XM_021603215.2 mRNA downstream 92199 48424865 ~ 48447883 (-) False LOC110523983
XM_021603201.2 mRNA downstream 414404 48106327 ~ 48125678 (-) True nup54
XM_036977730.1 mRNA downstream 414405 48106327 ~ 48125677 (-) False nup54
XM_021603223.2 mRNA upstream 30318 48574750 ~ 48580663 (-) True pdxp
XM_021603231.2 mRNA upstream 102474 48646906 ~ 48693022 (-) False mier3a
XM_036977749.1 mRNA upstream 102474 48646906 ~ 48693022 (-) False mier3a
XM_036977750.1 mRNA upstream 102474 48646906 ~ 48693022 (-) False mier3a
XM_036977751.1 mRNA upstream 102474 48646906 ~ 48693022 (-) True mier3a
TU463711 other downstream 182517 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 182842 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 182842 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 182842 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 316862 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 989484 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 2074459 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 2177882 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 2178727 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2635326 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile