RNA id: XM_021603234.2


Basic Information

Item Value
RNA id XM_021603234.2
length 6496
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110523989
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48729983 ~ 48847550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAAGAAGAACTGCACATCATATTGTCTTGCTGGGGAGGACCAAACTGTAACTTTAGCTGTGGTGAAAGCgatgttttttttgttctttAGATTTTAAGGATACGTCACTATTCGTCAAAGCTGGATTGTGGATCTCGTGCTCATTTAAAAGATGGATTTAGACGTGTGTGCAGGCGGGAACAGTACCAAAGGAAAAGCTGATTCGGCTCATGCAGGTGAAGGAGGCGCAATGGCGACCGTGCCTCTGGAGCTCTATGACTCCGCTAGAGCGAAAATAGATGCAAATCTCCGCTGGCTGTTAGCCAAAGCTTACGGTATAGACCATATCCCAGAAGATCTATGTGACCCCTTCTACACGGACCAGTATGAGCAGGAGCACATCAAGCCGCCCGTCATCAGACTGCTGCTGTCCGGGGAGCTGTACTGCCGTGTCTGCGGCCTCATCCTGAAGGGCGAGCAGGCCTCAGCGCTCCAGTCCCACCTGTCCGTCATCCAGGCCCTCTCCCGGAAAGGCATCTACGTCCTGGAGAGCGACAACAACCCAGTCTCTGACGGTGACTTGGACTGTAGCCCCATCAAGATGAGTTCCCACATACCATTAATTGATTCCCTGATGATGGCCTACACAGTGGAGATGATCAGCATAGAGCAGGTGGTAGGCTGCGTCAAACGCTTCTCCACCTTCAGCGCCTCCAAGGAGCTGCCCTTTGACCTGGAGGACGCCATGGTCTTCTGGATCAATAAGGTGAATATGAAGATGAAGGAGATcgcagagaaagagagcaaaatCAAGCAGCATCTGCTAGAGTCTCCCAGCCACCAAAAGgtgcgaTATCGTAGAGACAACCTCTCTGGCCGGCAGCTCCAGCACTTCCCCATGCTGGATAACCTCATGAAGGACATGTGTGATGGCGCCGCTCTGCTGTCAGTGGTGCACTTCTACTGCCCCGAATGTATGAGGCTAGAGGATATTTGCCTGAAAGTGGTGTCCTCCATAGCAGACAGCCTGTACAACATCCAGCTCTTGAGGGAGTTTTGTAATGAGTACCTGAACCGAAGCTTCCACCTGCGTCCAGAAGATGTGCTGTATGCTCCCCCAGTGCTGAAGCACAATGTCATGGTGTTCATCGCAGAGCTATTCTGGTGGTTTGAGATCCTCAAGCCCGACTTTGTCCAGCCCCGGGACTTGCAAGAAGTCAAAGACGTGAGGTCACTGCTGCAGCCCAAGGATTCCCGCCCCCATGTCTCCATCTCCAATGCTACCAAACGCAGCTTCCTGGCCACACCTGGCTCTCCTGACATCATAACAACGTCCCAAAGCCCAGATATCTGTAACAGTACCAAAGTCAGTCCTGCGTCTAGCCCCTCACACTTATTACTCCCACTGAGACAGAGGCAACAGAAGTCCATACAGGAGAATGACACCTCAGGGCAGAGAAACAGGTCCAACTCTCTGTCACGTGTGGACAGTCAAGTTCAGGGGTCAAGCCTGGCCtggccagagagaagacagagacccCTTTCCCAGCCGGTGCCCTACGCCCTCCACTTCCCCCTGGAGAGAGAGTGCGATGGCCTGAGCCTGGCCCACTCCATCGGCAAGGACAGCCTGGGATCCAACATCATCAGCATCACACCCAAACACATGCCTGGTGGGCCGGGGATGGGTGTACAACTGCCCCCCCACAGGCTCAACGGTCAGGACATGATGGGCCACATCCGCTTCAAGGacaaggagatggaggaggaagagctgGTGGCCATCATCCACCCGGCGGCTCTGGCCAGGTGCTACGGCCCCCATGCCTCCCCCGAGAGTGACGAAATGGAGCAGGACGACCTGGAGGTCCAGAGTGTGGTGACCTCCAGAGTGTCCAGTGCTCGGCACGCCTACTGCCTCGCTGCCCCTCACCCCGACCCCCAGGCTGAGAGTTTCTACCTGGAGCCCCTGATGCCAGCCGTCTTTAAGACCGCCAAAGAGAAGAGCATCAGCCTGAACAAGGAGGAGGAAAGCGGGGAGAGTACAAGCAAAGCGGTCCTTAAGAGAACCACTGAGGGTCTTAATTGCACGTTCACCCCCATCCCCAATGTGGAGGCCACCTCTGGTCCCTTCAGACCACCCACGAAGGGGGGTACGGGTTCTTCTCAGCTCCCTCTGATGGGGGCAGCAGAGCCCATCACCAGGGATCAGTCTTGTGGCTTCTTCCTCCACCTGTCACCGGAGCCCGGGGACCAGACGACGACCTTCTTGGGGCTGGCACCGAGCTACAGCCCCTTCCCCACCGCCATTACTACAGCTTGGGTGGGCCGGGACTCATACTCTGAGATTGCAAacctggaagaggaggaggaggaggaggaggatcagATGGAGCTGGCCAAGGAAGTGGTGAGGAGGGTCATGGGGAAGTGtctggaagagggaggggagagcaaAGGGGAACCGGAGGGGGGCGAGGGCGAGTCGGCCAAGCTCCGGGAGGACATGAAGGTGTGCGAGCGCGAGGACAAGGAAGGCCTGGAAGCCTGGAGCGGACCGTCCAGCCCTTGCCTTAGCACGGCGTCCTGGGCCAGCAGTGTGTGCAACAGCGGCACCATGCGAATGACCAGCTTTGCAGAGCGCAAGCTCCACCGAAAGGTCAACAGCTTTCTTGACAACTGCTCCAATAACAGCAGCTCCCAAAAGACCACACCCAATGGCTCGGAGAGCGCCCCCTACACTCTAGGAGGCTTGTGGTGCCTGCAGGCTCCTAGCCCATGTCGGCTGGCTAAAGACGGCGCTTTGCGGGTCAGAAAGGAGGTTGGCACCACCAACGTCCTGGCCTCAGAGCTGGTGCAGCTCCACATGCAGCTGGAGGAGCAGCGGCGCGCCATAGAGCACCAAAAGAAGAAGATGGAGACCATATCGGCGTGCCAGCGACTCAAGCTGGGCAAGGCTGCCTTCCTCGACATTGTCAAGAAGGGGGGTGGCAAGAACAACACGCTGCCCCAGCCCCTCAAACACCTGGAGACCCAATATCAGACGGCCGGCAAGGACAAAGCTTGCAGGGACGACTCGTGTTTGGATGTCCTGAAGGGTCAGAGGAAGGAGGGACAGCAGCAGAGGGACAGGGACAACAGAACAAACAGTGGCGGTGCAGGGCCGCCGGACGAGGCGGGGGTCGAGCCAGACCTGAGCGAGTGTAGCCGCTCCATAGAGTTGCTGAATGAAGCCATCGGTGCCATTCAGCAACAGATGATGCAGCTGTCTCTACAGCAGGACCGTCTGATAAAGCAGAGCGTCCAGTCACCCCTAGGGGTTCCGCATGCCGCCTCCCTTCTATCCCTGCCATCAGCCCCTACACCCACCCAAGACACCTCTTCAATTCCTTCCTCAGACTCCACCGCTACCCCCACCGACTCCAAATTCCGCCCAGCCGTGCATTTCATGGAGACCATCACCACCGCTCCACCCGCCCGCCGCCCTCCCAAACTGAGCTCCGGATGCAGCCCCAGGACCAAACCCGCAGAACTCAAACTGACCAAGGAGAATGGCATGCCGGCTTCCAAGACCGGCACCCCTGCATCCAACACAGACCCTAGGCGCTCCCCGGGGTGGCACGCCACCTCCCGAGGGGAGCAGGATAGGGACCGGAGTCAGAACAGCAGCCCCACCTGCGTGATATTCACAGAGAGCCCAAGGGCCTTGGAGAGAGGCACGCTCCGTAGCACCACCTTCAAGATCAGAGATGAGGCCAACCAGCGCAGCCACAGAGACAGGCCCATCCTTAACCCTAAGCATACCCCCTGTGGCACCCCTCTCACACACCACTGTGTGGACGTGGCTGAGGGGCGGGAGCGTAGCGGCTCAGGGAAGGAGATCGAGCCCGGCAAGGAGGGAGGTCGAGGGAAAGGCCAGCTGATCGAGGTAGTCCTGTCTGACCTGAAGGAACCATCGGCGGGAAAAGACTCCGATATAGGGGACACCTCGGCAGACGGAGAACAGAAGTCAGGACTGGGTTTCTTCTTCAGGgACGATGAGAAGATGGCAGAGGATGAGAGGGCAAAGCGTCGTGCTCACTTTCTCCTCAAACAGCAGCGGAAGATGGAGGAGGCACGGCTCCGCAAACTGCAGACGGAGGCTGAGAGCGAACAGAAACGAGACGAAGCCAGGCGTAAGGCAGAAGAGGACCgtgtgaggaaggaggaggagaaggtgcGGAGGGAGCTGATCAAGCAGGAGTACCTGAGGAGGAAGCAGCAGGAGCTGATAGAGGAGCAGGGTTTGGTTAAGCCCAGGCCCAGGTGTAAAGCCAGGAAGATCCGGCCTAAGTCCCTGCATCGTGGAGAGTCCTGCTCCGACACTGGCTTCTCCAAGGGATCCTCCACACGTTATTCTCTGAGAGCATCCATGTTGATGAGAGCCCAGGGATCAGCAGCAGGCAGTAGGGGAGAGGACATTCTCCACTGTTTCCAATCAGGCTCCACTCTCTCCTTGGCCACCGAGACAGAGAGTGTCACTTTTGGAGGAGCCAAaccacagaggcgtGGGTCGGTGGAGTCGTTCCCTCTTCTAAGAATGAACTCCAGTAGGAAcatggagagagactgggagaacgGCTCTACAGCGTCCTCCATCACatctacagtagagtacaatgGTCCCAAGCTGTTTAAGGAGTGTGTTTCCAAGTCCAACAAGCCAATAATCCACAATGCCATCACCCACTGCTGCCTGGCTGGCAAGGTTAATGAAGcccagaagaacaccatcctagaGGAGCTGGAGAGGTGTGAGGCCAACCACCTGATGATTCTGTTCAGGGACGGTAGCTGCCAGTTCCGAGCCATCTACTCCTTCTCCCCCGACACAGAGGAGATTGTCAAGTTCACCGGCATGGGGCCACGCAGCATCAGCCGCAAGATGATCGACAAGCTCTACAAGTACAGCTCCGACCGCAAGCAGTTCAACTGCATCCCCGCCAAGACCGTGTCAGTCAGCGTGGATGCCCTGACCATACACAACCACCTGTGGCAGATCAAGAGACCCAGCGGATCTTCTAGGAAGAAGtgaggaagggaagaagaagaggacaagAAGGCACACCATAGGCATTCATTCTACGATTGGGCAGGACCCAGTAGTCTCGGATATGACCATTCTGTGGGTTTGGCCTGTTGATGAAGAGGGATTGGtctattgctgtgtgtgtgtagtcttcgGATTGGTGTAAATGGCGGTCTCCGTGGAGATGGACCTGAGAATTTTAATGAACACCTTCCAACTAACCAAATTAGTCTTTTAAAGATTAGGAATGTTTTCTGCATGTGGCACTTTTTATGTTTGAAGTATTGGGTTTTATGCTAACTAAGGAAAAGCCTATAGTTTAGCACTAAACACACTTCTTCTATACGTATGTAGTGGAtcaaaaagacaaaacaaagtaATACTGAAACTACAGACTACTGAAATAAGTGCAAATAGAGGCAGCACTGAAAGTACAGACGCTACAGACTTATAATAATAGAAACCACAGCCATTGTCAAAATTGTTTGAAAGTGCTTGTTCTAGTCGGGCAAAATCCTGCAGCTGTGACCCCTCTGATCTCCTTCAAAAGGCTATTTATTCAATAATACTAGTATGGGCTTTTAAGTTATTTTACCATGAATAAACTTTACTTaacatttttgaaaatgatgaGAAAGATATGGTCAAgtctttttgtgtgtttttgcagATGTTTGTGGAAAGGGGGGTTGGGAAtgcgtggctgtgtgtgtctctgaatgTGTTTACTCGTTAAATTATGCTTTAACAAAGGTTTTATCATGCAGTGGAATAAGCTCCACCACTGTTTAATTCAGTTAAAAGATGAATGCTCTTGTCCCAGGAGAAGGGAGGCTCATCACTTTCTCAGTGTTATTGTTAGTGGTGAGGTGGTGATTAGTATTTACTCGGTTCCAAACGAGCACGCTTTGGGTTTCAGTCTATTGCActctatctacagtatgttacagCAGAATACTGGCCCACGATCAATGGTACTCATGAAGATCCAAATCCACTGAATGCTCAGCTCACTCTTACCAGCAGAGAGACACCAAGGTCTTCTGCTCCTTTTCACTAACACACTGGAACCTGATCTGAAGTAACTATTGGCCCTACTTGCAGCCTATAACATGAGCCAGGATTTTTCCCTAGTCTCATGGTCGGGGAAAAGTCCTGGCCCCATTCATGACCTAAACCTGCTGTCTGTGAGCACTAAGAGCAGCTCTACCATGACTGACTATGCCTCAAGTTCATTAAATTCAAGGGAAACTGGACAATACTTGATATTATTTGCTGCATTTTGTACATGTGAGTAGTggttttgtatatactgtaccaccTTATGTTTACTAAAAGTTGGCGCAATTGAATTTTTCATTACTGGCTTTAAAGATTGTATTTGTTTCTTTAAAATATTCTACTATATATTTATTTTGAAAAACACTAGTGTAATAAATAATACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464225 lncRNA downstream 84608 48641214 ~ 48645375 (-) False G409218
TU464221 lncRNA downstream 84608 48641259 ~ 48645375 (-) False G409218
TU464219 lncRNA downstream 84608 48641553 ~ 48645375 (-) True G409218
TU464232 lncRNA downstream 123474 48605653 ~ 48606509 (-) True G409219
TU464231 lncRNA downstream 123631 48605653 ~ 48606352 (-) False G409219
TU464445 lncRNA upstream 139252 48986802 ~ 48987055 (-) True G409418
TU464451 lncRNA upstream 144002 48991552 ~ 48991777 (-) True G409424
TU464460 lncRNA upstream 150349 48997899 ~ 48998109 (-) True G409433
TU464956 lncRNA upstream 175063 49022613 ~ 49022850 (-) True G409909
TU464961 lncRNA upstream 181112 49028662 ~ 49028942 (-) True G409914
XM_021603231.2 mRNA downstream 36961 48646906 ~ 48693022 (-) False mier3a
XM_036977749.1 mRNA downstream 36961 48646906 ~ 48693022 (-) False mier3a
XM_036977750.1 mRNA downstream 36961 48646906 ~ 48693022 (-) False mier3a
XM_036977751.1 mRNA downstream 36961 48646906 ~ 48693022 (-) True mier3a
XM_021603223.2 mRNA downstream 149320 48574750 ~ 48580663 (-) True pdxp
NM_001135695.1 mRNA upstream 33843 48881393 ~ 48954821 (-) False notch1
XM_036976505.1 mRNA upstream 34912 48882462 ~ 48915407 (-) False notch1
XM_036976507.1 mRNA upstream 42231 48889781 ~ 48954869 (-) True notch1
XM_036977752.1 mRNA upstream 240985 49088535 ~ 49370988 (-) True col27a1a
XM_021603239.2 mRNA upstream 810436 49657986 ~ 49663582 (-) True LOC110523994
TU463711 other downstream 372418 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 372743 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 372743 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 372743 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 506763 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 686366 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 1771341 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 1874764 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 1875609 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2332208 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile