RNA id: XM_036976507.1


Basic Information

Item Value
RNA id XM_036976507.1
length 6012
RNA type mRNA
GC content 0.57
exon number 31
gene id notch1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48881393 ~ 48954869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCGAATGAGTTGACTTGATAGGCAGCCGTTGGTCTACCTGAGTGAAGGCTGGGGAGGAGGAACTTTCAGAGTTGCGCGATAGACTGCTCTTCATTCCGAACTCAGAAGCGTATGCGTCGACATCTCACGAATTGAGTTTTCACGGAGACTATTCTCTCCGGAGTGTGTCGTCTGGCAgtccaatttatttatttacaaggGATATTTATTTAAAACAATTTAACCACGTCTGCAGCTAACGACACTGTGGATCTATGCAAATCGTAGGAATTGTAGGGCTTTTTTGaagttgaagagaggaggaatGTATCGTTTCTTTGTGAAACTAACGTTTCTTATTCCAGTCATCGTCATAACACAAGGTCTAAGATGCTCTCTAACTACTGAATCAtgtctgaatggagggaggtgtGAGGCCTCCTCTGACAGAAATGGAGAATGCAGGTGTACAAGTGACTATGTGGGTAGCCGCTGCCAGTACTCCAACCCCTGCAACCCCTCGCCATGCCGCAACGGTGGCGAGTGCCGCGCCGTATCCCACGGCAACACTTTTGAATTCCACTGCAAATGTCGACTGGGCTTCTCCGACCAGCTGTGCCTGACGCCTACCAACCATGCCTGCATGAGTTCGCCATGTCGCAATGGAGGGACTTGTGACCTGATCACGCTCTCCGACTACCGCTGCCGCTGCCCGCCCGGATGGTCAGgGAAGACATGCCAGATTGCCAACCCCTGTGCATCCAACCCCTGTGCCAACGGTGGACAATGCTCACCCTTCGAGTCCCACTACATCTGTGCATGCCTGCCCGCCTTTCATGGCCAGACCTGCAAGCTGGACGTCAATGAGTGTGCCCAGATGTCGTCACCCTGTCGCAACGGGGGCATGTGTGTGAATGAGGTGGGCTCCTACCACTGCCGCTGCCCCCAGGAGTACACGGGTGCCAACTGTGAGACCCCCTACATGCCCTGCAACCCCTCTCCCTGCCACAGTGGGGGCACTTGCGTGCAGAAGGGGGACACCACCTATGACTGCAGCTGCCTGCCAGgATTTACAAGTCAGAATTGTGATCACAACATTGATGACTGCCCAGGCCACAACTGTCAGAATGGTGGCTTGTGTGTGGATGGGGTCAACACCTACAACTGCCAGTGCCCCCCTCACTTTACAGGCCAGTTCTGTACCGAGAATGTGGATGAGTGTGAGATGATGCCAAACACGTGCCAGAACGGCGGTACGTGCCACGACACCTATGGCAgcttccactgtgtctgtgtcaaTGGCTGGACGGGCGACGACTGCAGTGAGAACATCGACGACTGTGCCAGCGCAGCCTGTTATCACGGCGCCACATGCCACGACCGCGTAGCCTCCTTCTTCTGCGAGTGTCCACATGGGCGCACAGGTTTACTGTGTCATCTTGATGATGCCTGCATCAGTAACCCGTGTCAGAAAGGCTCTAACTGTGACACCAATCCTGTCAACGGGAAAGCCATCTGTACCTGCCCTCCAGGTTACACTGGCTCTGCATGCAACCAGGACATTGACGAGTGTTCCTTAGGTGCCAACCCTTGCGAGCACGGTGGGCGCTGCCTGAACACTAAAGGCTCGTTCCAGTGCAAGTGTCTCCAGGGTTATGAGGGCCCGCGGTGCGAGATGGATGTCAACGAGTGCATGTCCAACCCCTGTCAGAACGATGCCACATGCCTGGACCAAATTGGAGGATTCCACTGCATCTGCATGCCAGgttaTGAGGGGATGTTTTGCCAGATCAACACTGACGAGTGTGCCAGCATGCCCTGTCTGAACAACGGGAAGTGCATCGACAGGATCAACTCCTTCCACTGCGAGTGCCACAAAGGCTTCTCTGGTGGTCTATGTCAGGTTGACATCGATGAGTGTGCCAGCACGCCCTGCATGAACGGAGCCAAGTGTACCGACGGCCCTAACAAATACTCATGTGAATGCACTGAAGGTTACTCTGGACCGCACTGTGAGACTGACATCAACGAGTGTTACTCGGACCCCTGTCACTATGGCACGTGTAAGGACGGCCTGGCCACCTTCACCTGCTACTGTCACCCTGGTTACACGGGCCGCCTGTGTGAGACCAACATCAATGAGTGTCTGAGCCAGCCATGTCAGAACGGAGGCACCTGTCAGGACAGGGAGAACACTTACATCTGCACCTGCCCCAAGGGCACTGCAGGCTTTAACTGTGAGGTGAATCTGGATGACTGTAAGAGCAAGCCCTGTGACTACGGGAGGTGCATTGACAAGATCAACAGCTATGAGTGTGCATGTGAGCCAGGTTACGCAGGCGCCATGTGCAACATCAATACCGATGAGTGTGCCATCAACCCCTGTCACAATGGTGGCACCTGCATCGATGGCATCAACAGCTTCACATGCCTGTGCCCAGAGGGCTACAGTGATGCCACCTGTCTGTTGCAGGTGAACGAGTGTGGCAGCAACCCCTGCATCCATGGTCGCTGCCAGGATCTGCTCAAtggCTACAGGTGTTTCTGTGACTCTGGCTGGGGTGGGCCTAACTGTGACATCAACAACAACGAGTGTGAGTCCAACCCGTGTATGAACGGTGGCACCTGCAAGGATATGACCAGTGGATATGTTTGTAGCTGCCGAGCCGGCTTCAGTGGACCTAACTGCCAAACTAACATCAACGAGTGTGCCTCCAACCCCTGCCTGAACCAGGGCACCTGCATTGACGATGTGGCCGGCTACAAGTGCAACTGCTTACTGCCCTATACTGGTGAGATGTGTGAGACACTGCTGGCCCCATGCAGCCCCATGCAGCCCTGTAAGAACGGTGGAGTGTGTCATGAGTCAGAGGACTACCAGAGCTTCTCCTGCCTCTGTCCAGAGGGATGGCAAGGTCAAACATGCGAGATAGATATCAACGAATGTGTGAAAAGTCCTTGCCGCAGCGGCGCCACATGCCACAACATGGTGGGCAGCTACCGATGCAGCTGCCGTCCGGGCTACACCGGCCAGAAGTGTGAGACGGACATCAACAACTGCAAGCCCAACCCCTGCAGTAATGGAGGTCTGTGCAGAGATGGAGTGGACAGCTTTGTGTGCACTTGTCTGCCAGGGTTCCGTGGTGGCAGGTGTGAGCATGACATTAATGAGTGCGAGAGCAACCCGTGTAAGAATGGGGCCAACTGCACCGACTGTGTCAACtcctacacctgcacctgtcaaccTGGTTTCAGTGGCATCAACTGCGAGAATAACACCCCCGACTGcacagagagCTCTTGCTTCAACGGTGGCACCTGCGTGGATGGCATCAATACCTTCACCTGCCTGTGTCTGCCAGGCTTCACAGGCAGCTACTGCCAGCACGACATCAATGAGTGTGACTCCAAGCCCTGCCTCAATGGTGGCACCTGTCTGGACAGCTACGGCACCTACAAGTGTACCTGCTCTCATGGCTACACTGGAGTCAACTGCCAGAACCTGGTGCGGTGGTGTGACTCATCTCCCTGTAAGAATGGAGGCTCATGTTGGCAGCAGGGCTCCTCGTACACCTGTCAGTGTCAGACGGGATGGACCGGCCTCTACTGTGACGTCCCCAGTGTCTCCTGCGAGGTGGCTGCCAAACAGCAAGGTGTGGAGGTGGCTCACCTGTGTCGTAACTCGGGCCAGTGTCTGGATGCTGGCAACACCCACTACTGCCGCTGCCAGGCGGGCTACATGGGCAGCTACTGCCAGGAACAGGTGGACGAGTGCTCCCCCAACCCTTGCCAGAACGGTGCCACCTGCACAGACTACCTGGGAGGGTACAGTTGTGAGTGTCTTCCTGGGTACCACGGGGTGAACTGCTCCAAGGAGATCAACGAATGTCTGTCTCAGCCCTGTCAGCATGGGGGCACCTGCATCGACCTCATAAACACCTACAAATGCTCCTGTCCCAGAGGAACACAAGGCATTCACTGTGAGATCAACCTGGATGACTGCAACCCCTCGACAGACCCTCTGACCAATGAGCCCAAGTGTTTCAACAAGGGTCAGTGTGTGGACAGAGTGGGGGGCTACCACTGCATGTGCCCCGCTGGCTACGTAGGGGAGCGCTGCGAGGGTGACGTCAACGAGTGCCTGTCGGACCCCTGCGACCTGCGAGGCTCCTACAACTGTGTCCAGCTCACCAACAGCTACCGCTGCGAGTGTCGCACTGGATACACAGGCCAGCGCTGTGACAAGGTGTTTGATGGCTGTAAGGGGAGACCATGTAGGAACGGAGGAATGTGTGCAGTGGCCAGTAACAACCCCGACGGATTCATCTGCAAATGCCCACCGGGTTACACAGGCTCCTCCTGCGAATACGACTCACGCTTCTGTGGTAGCCTCAACTGCAGAAATGGTGGCACCTGTGTCTCTGGCCACCTGAGCCCTCGTTGCTTGTGCCCCACAGCTTTTACCGGCCCTGAGTGCCAGACTCCCACGAACAGCCCCTGCAATGTCAACCACTGCTACAACGGGGGCACTTGCCAGAGAACCCCCGATGCACCCTTCTTCCACTGCAGCTGCCCGAACAACTTCAATGGCCTGCTCTGCCACATCCTTGATTACTCCTTTCCCGGTGGGTTCGGCCGGGACATCACACCACCACCCGAGGTAGAGGTGAGCTGCGAGATCCCGCAGTGCGACGAGTGGGCGGGCAACCACATCTGTGACTCGCTGTGCAACAACCACGCCTGCGGCTGGGACGGTGGCGACTGCTCGCTCAACTTCGATGACCCATGGCAGAACTGCTCGGCAGCTCTGCAGTGCTGGCGGTACTTCAATGATGGGAAGTGTGACGAGCAGTGCAAAAGCCCTGGGTGTCTCTACGACGGCTTCGACTGCCAGGGACAAGAGGGACAGTGCAACCCGCTGTATGACCAGTACTGTAAGGACCACTACGCGGACGGCCACTGCGACCAGGGTTGTAACAACGCAGAGTGCGAGTGGGACGGCCTGGACTGCGCCAACAACATGCCCGAGAAGCTAGCTGATGGCCACCTGGTCCTTGTGGTCCACATCCCCCCCGAGCAGCTAAAAAATGGTTTGTCCACGTTCCTCCGTGAGCTCAGCAGCGTTTTGCACACCAACGTGGTGTTCCGGCGCGACGCAAACGGAGAGCCCATGGTGTTCCCCTACTATGGCAGCGAGCAGGAGCTGGCCAAGCACAACGTGAAGCGTTCCACCGACAGCTGGCCTGACTGGGCGGTCGTGCCGGCCAACATGCTCGGTCAGATGAAGGAGAGCGTGGGGTCCATGGTGAACCTGCCCCGCCAGCGCCGAGAATTGGACCTCATGCAGGTCAAAGGGTCGGTGGTATACCTGGAGATTGATAACCGCCAGTGCTACCAGCAGTCCACGGAATGCTTCCAGAGCGCCACCGACGTCGCCGCGTTCCTGGGAGCGCTGGCCTCCAGCGGGAACCTCAATGTTCCTTACATCGAGGCAGTCACCAGTGTGCAGCCCACCCCTGCATCCTCTGAGCTATACCCAATGTACGTGGTGTTCCTGGGGCTGGCTGTACTGGGCTTCATCTGCCTGGGGGTGCTGGTATCACGTAAACGCCGACGGGAGCACGGACAGCTCTGGTTCCCTGAGGGCTTCAAAGTTTCTGAGCCCAGCAAGAAGAAACGCAGAGAGCCAGTAGGAGAGGACTCTGTGGGACTCaaGCCACTGAAGAACATTTTGGACATTTCTCTGATGGACGACAGCCAGAATGGATtgtggggagaggaggagccaGACTCGAGACGCTTTAGGtttgagGAGCAGGCCGTGTTGAACCTAGATGACCGCACTGACCACAGACAGTGGACCCAGCAACACCTGGACGCGGCTGACCTGCGGATCCCTTCCATCGCCCCCACGCCTCCCCAGGGAGAGATCGAGAATGACTGCATGGACGTCAATGTCCGAGGCCCAGgacaatgacccaacacacctccagcctgtgtaagggctatttgaccatggACCGTGATGga

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464327 lncRNA downstream 93075 48788932 ~ 48796706 (-) True G409308
TU464324 lncRNA downstream 96138 48786069 ~ 48793643 (-) True G409306
TU464323 lncRNA downstream 96901 48785536 ~ 48792880 (-) True G409305
TU464221 lncRNA downstream 244406 48641259 ~ 48645375 (-) False G409218
TU464445 lncRNA upstream 31933 48986802 ~ 48987055 (-) True G409418
TU464451 lncRNA upstream 36683 48991552 ~ 48991777 (-) True G409424
TU464460 lncRNA upstream 43030 48997899 ~ 48998109 (-) True G409433
TU464956 lncRNA upstream 67744 49022613 ~ 49022850 (-) True G409909
TU464961 lncRNA upstream 73793 49028662 ~ 49028942 (-) True G409914
XM_021603234.2 mRNA downstream 42231 48729983 ~ 48847550 (-) False LOC110523989
XM_021603235.2 mRNA downstream 42231 48729983 ~ 48847550 (-) False LOC110523989
XM_021603236.2 mRNA downstream 42231 48731588 ~ 48847550 (-) True LOC110523989
XM_036977750.1 mRNA downstream 196759 48646906 ~ 48693022 (-) False mier3a
XM_036977752.1 mRNA upstream 133666 49088535 ~ 49370988 (-) True col27a1a
XM_021603239.2 mRNA upstream 703117 49657986 ~ 49663582 (-) True LOC110523994
XM_021601323.2 mRNA upstream 1190109 50144978 ~ 50150252 (-) True LOC110522869
XR_005051756.1 mRNA upstream 1475851 50430720 ~ 50468722 (-) False LOC118964617
XR_005051755.1 mRNA upstream 1475851 50430720 ~ 50468752 (-) False LOC118964617
TU463711 other downstream 532216 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 532541 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 532541 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 532541 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 666561 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 579047 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 1664022 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 1767445 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 1768290 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2224889 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile