RNA id: XM_021603239.2


Basic Information

Item Value
RNA id XM_021603239.2
length 3635
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110523994
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 49657986 ~ 49663582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATGACAAGACCTCTCGTAGAGTGTCAGGCCTCTATACTCAGTAGCGATGCATGCCTTACACAGATTTGTTAGTCAACAGTCTGTGTTTCattatatttcaaaatgttgttatgCATTCTTAAATATAACTTTCTcgggagtttaaatgtatttttcagtgTCATTTCAATTTAGTTTGAGAACATTTTATACATCAAATGTGGCTTCTTGGTTCAACTCCCGAAGTCATGGAAGAGCGCCTGTCGCCTTCTGCACGTTTTGTCCGAAGCCCCTGGAATAACCAAAATCAAGCCGCAAAGAGGGTTCACAGTATTGAAGCAATATTGGGATTTAAAGACGAAAATATGTTTCATCAATCTGTGTCCTACAATGAATCAGGAAAACCTGCTGAGCTGAGAGGAAATGGAATTATGTCATCCCCGAAGAAAGAACTCAACCCAAAATGTTTTGACAGTGTCTGCTGCAGCAGTTCGGGGGCCTCTGTCAGTTCTGACTTACCTAAAGGGGAGGATAAATTGCCCGTTGATGAGAACCCAAAGAAGAAACACCGGCGTAATAGGACCACGTTCACCACCTTTCAGCTGCACGAGCTGGAGAGAGCGTTCGAAAAGTCGCACTATCCTGACGTCTACAGCAGAGAGGAGATCGCGCTCAAAGTTCATCTTCCCGAGGTCCGAGTACAGGTGTGGTTCCAGAACCGTCGGGCCAAGTGGCGTCGCCAGGAAAAGCTGGAGGTGAGCTCCATCAAGCTCCAGGACACTTCCTCCTTCCTGTCCTTCAGCCGCTCCTCCTCCCAGTCTCTGGGCTCCGGGCTACAGCTGGAGCCATGGCTCAGCACTCCCACCACCACTGCCACCCCTCTGCAGTCCCTTTCCGGCTTCATCACCAGCCCATCTCAGGGCCTCCAAAGAACCTCCAGCTACACTCCTCCACCCTTTCTCAACTCCCCCAGTTTCGGGCATATTGGTTCTCTGTGTCCTCCTCCGCCGCCCCCGTACCAGTGCTCAGCGTCTGGGTACGTGGACAAGTTAATTATGGAGGAGTTGGATCCTCGTAATTCTAGTATTGTGTCTCTGAGGATGAAGGCTAAGGAGCATATTCAGTCTATTGGAGAACATGGTGAGGATGGCTGCTGGCTTGCATCCCTCTGAGGCAATGCAAAGACTAAAGACTTCTACTGAATGTATTGTTGCTGCGTCATAGACATTAAAGTCCAATATGCTAGAGGACTCTTCTCCACAAGATGATGAACATAGTTTTTTTGTCTTCTTCAATGGTTTACATTATCATCCCAGTCAGTGTTTTTTGTGCATTCTCAGTATATTAAAGTTTTATAATGTACTTTCCTCATCAATGAAATGCTTGCATTCACCAAGATACATCTGGTTTACTCTGGTCTACTTTTAGGTTCTGACTTAGGAAATGTACACTTTTCCTACTTACCTTGTGCAGGTGTGTAAAGGTATCCAAATAAGCAGCGTAGGTTCGGTTGACTAGGTGAAGTGAACATCTGTgcttgcatactcccttaaagggacactttgggattttggcaatgaagccttTTAACTACTTCCCCAGAATCAGATGAACTCAagaataccatttttatgtctctgcatttTGTTTGAAGGAACTTAGAGGTagtctatggtatctactagcatgctagcagtatTACTGTTTGTTCCTCTTGAGACGCCATATCCAGTACACTTCatcaaaatagtcaaaattaagATTATGATAGCTCAAGAAATCTTTAattaattttgacatttttgccagGGAGGTTTTAGTCGCaaaattttacatctaactaagattttggtgcagtatttctcaagtgaaaaactTTGCATGAAGACTAGTCATCTGTTGTTGAATGccaacaaacacttaattgaagaatccctaatgttgaccaatcaccaacgAAAGGCATACTTCGGCTTGCCTCAAGAAAAAGTGTGCTCGAACAGGCTGGGAAAAAAACTGACGAACACAGCCaagcaccaaaacaaacaaaaacctcacaaaatgttgtcataatatatgcagtAACTGTTTAGAACCGGGAAGTATAAGATCTTAACAGGCTTTGCAGATGAGGTTACCTTGCGTGCATTGAATAAATTTAATTCAaccgctgaaaaccctcccacttgctggccaacagattttctagTGACATTTTTATTCAatagccatccctttaaatttgGTGTACCTTTAATTAGAATTTTCTCAACAGACTCACTAGAACATATagatgggttggttgtttagcaacaaaactgacCCATGCACAACTATGGGGTAAAACAGacggggttggcttagattgttgacaacatgtaaattATGTTgaatctccaatgtttattgaaaacatgaataaagtTGCACAATAAATTTTTTGACATgttagcatagcatagcatagcatagcataaaCGTGACAGTCAAACACCTCATAACAACACATGGTTTTCGGGAAGTTCTCAGCTAACCTGTCTATGGAGAGAATGTTTCAGAATGTTAGGGACCAATGAAAAAAAGCCTTGTAAATACATGCATTTTTCTTtccttttcagcaccaattggtagataaaaaaatactctgatcttgtatatTATTTAGAGTTAGGAAAGTacttatacattttttttttacctaccAACTAGGTAGGTTCTGCTCTACTATCAGTGCACACAGGTTTCCATAGGCTACAGCCTCCGCTTGGATCTCCAAATTTAACTCCTGCAAATGATGAAGCCATAGGCCTACAATTAAAATTCTGAATAATGATACAGCTATTTCTACTTCACTTGTGGAAAAGAGGCCGAAATACCTGTCGTGTTGACATGCTTTTCAGTTTGCTGaaatatgactggtttcacatttgtctccaacGATCATAAAATAAAATAGATCTGAAACAACtgtaatttatatttacaatcctCTTGTCCTAACTAATGACTAATTTACCTAGGTCTTATTAATAGCTCTTATCAAtttataaattacagtgcatAGAGTTTTGGTGTTATTTCTACATATAATTGTCGTTTTTTTAAAGTGGTGGAATTATGAGCAAGTTAAGTCAAGGTCTGACTACGGaatatctgtagacacacctctgtCTCACCTCCTTTTCTGTGAATAGCATTGAATAGGTTGTGAATATGCTTAAAGAGAAAAGTGTAGAAAAAGGGGAATTATATGTTCCATTTAGGCATTCTTAATTCGGGTCAGAATTCCCCCTCTTACTGAATGAAGGATGCCATTGAAGAGAAAGTGGAAATGTTAAAATGTAAAATTGCCTGCAACCTGTTTTCTATGTTGACATTTGCATCCCTATTTTAACAATTATCTTCTGTTATGTATATGTACTTCTGCTAAGACAATCACATCCCAGGATTAATCACTGTATTTATTATTGTTTCCAAGCCCTTGTCTAGATAACTTTCTTTCAGTGTTCTTCCAGTTTGTGCAGCTGACTTTACAAATGTTCATGACCAATTGTCCATTTGTTGTTTATCTCCATACGTTAATGATTTTATGGAAATAAAACTGCATAGTTACATCAACACTTATCCCTTATTTCATTAATTGTCATATGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465343 lncRNA downstream 40945 49616839 ~ 49617041 (-) True G410272
TU465288 lncRNA downstream 149652 49505787 ~ 49508334 (-) True G410217
TU465285 lncRNA downstream 157322 49500209 ~ 49500664 (-) True G410214
TU465068 lncRNA downstream 443299 49212862 ~ 49214687 (-) True G410006
TU465072 lncRNA downstream 463688 49176268 ~ 49194298 (-) False G410006
TU465412 lncRNA upstream 70412 49733994 ~ 49734201 (-) True G410336
TU465415 lncRNA upstream 72906 49736488 ~ 49736763 (-) True G410339
TU465746 lncRNA upstream 186422 49850004 ~ 49852736 (-) True G410658
TU465799 lncRNA upstream 253718 49917300 ~ 49922555 (-) True G410707
TU465839 lncRNA upstream 315069 49978651 ~ 49978862 (-) True G410747
XM_036977752.1 mRNA downstream 286998 49088535 ~ 49370988 (-) True col27a1a
XM_036976507.1 mRNA downstream 703117 48889781 ~ 48954869 (-) True notch1
NM_001135695.1 mRNA downstream 703165 48881393 ~ 48954821 (-) False notch1
XM_036976505.1 mRNA downstream 742579 48882462 ~ 48915407 (-) False notch1
XM_021603235.2 mRNA downstream 810436 48729983 ~ 48847550 (-) False LOC110523989
XM_021601323.2 mRNA upstream 481396 50144978 ~ 50150252 (-) True LOC110522869
XR_005051756.1 mRNA upstream 767138 50430720 ~ 50468722 (-) False LOC118964617
XR_005051755.1 mRNA upstream 767138 50430720 ~ 50468752 (-) False LOC118964617
XM_021603243.2 mRNA upstream 1162027 50825609 ~ 50987810 (-) False LOC110523998
XM_021603244.2 mRNA upstream 1162027 50825609 ~ 50987810 (-) False LOC110523998
TU465237 other downstream 81530 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 1300421 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 1300746 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 1300746 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 1300746 48353711 ~ 48357240 (-) False G408782
TU466579 other upstream 955309 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 1058732 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 1059577 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 1516176 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 1709883 51373465 ~ 51377130 (-) True G412372

Expression Profile