RNA id: XM_021601323.2


Basic Information

Item Value
RNA id XM_021601323.2
length 1147
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110522869
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50144978 ~ 50150252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGGTACgggtaaaaaaaagaaattgGCAAGTtacaggagggagggaagaccAATATGCAGGTGGTCATGACATCACCAGTGGCTGGCTATAAAGTCGGGAGTACTAATTCACAGTTAGAGTAGCACTTGGGAAGCTTGGAgtaaggacagacagagagacatagagtaCCAACTGGTTACCAACCGATATCATTTAGCCTGCACAGAGGAATCCTTTACAAAACTTGTCAGAATGAACATCTCGCATTTGGTGGCTTGTGGACTTATGATCATTCTGCTTTCAGTGAGGACAGGGGCGAAGCCTCTGACACCGGCGCAACAGAAGTCTCTTAAAAGTTTGTTGGGGGAGGAGCTGTCGGAGTTCCTGGCatctgaagagagagagcggaggatgGAAAACTTGCGCTCCAGGGTACGATTGCTGCGAGACCTGCGCATGGAAACTCGCGCCAAGGGCATGTGGGCGCGCTTGCTGAACGACCAGCCCAGTGCACGGAGACACAAACCTAACACCAAGAAAGGGGCCGCGGCCCGGAGTGGCTGCTTCGGACACAAAATGGACAGGATAGGCACTATTAGCGGCATGGGCTGTTAGAGATGGCGCATCGAGACGTATCGCATTCAGACGATGGGTTCAACAACATGGATTCAGTTGGTCCTCGCCTGAGGTAAATACCTAAAAAGTGATGGATTTTCGGTATAAAAAGCCACCATGACCAGCATTTTCGAGGACTGAGACAACAATGATAAAACCAACCCATATGTATAACATTGGTATAAAACCTAGAAACCGAAAAGCTGTAtattgttgctgctgctgtaaaTTCATGTACTTTCATTCCTGcataaatgtatttatgttttaaaaactatttatatgtttataaAATAGATATTTATAAATATTCATTTTATTTATGTAACATTTTGAAATGGATGCAAACTGCAGGTAAATTCTGTTTGTAACCTTTTTTGTCTTAAATAGTgaatgttttcaaaatgataaaaaaataaattccaGGCACTAACGAGTCTCCTCCCAGTTTTTGTATATGGAGAAAACATATCGTTTCTGGTGAAAATAAACTATGGAATGGGGGTGAGACTGAGGCTTTATTCAGTGATAGTGCGCCACTTATGTAGG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465909 lncRNA downstream 34738 50109931 ~ 50110240 (-) True G410809
TU465871 lncRNA downstream 123028 50021449 ~ 50021950 (-) True G410779
TU465869 lncRNA downstream 126723 50017934 ~ 50018255 (-) True G410777
TU465865 lncRNA downstream 131918 50012857 ~ 50013060 (-) True G410773
TU465854 lncRNA downstream 147083 49997545 ~ 49997895 (-) True G410762
TU465986 lncRNA upstream 35267 50185519 ~ 50185719 (-) True G410884
TU465998 lncRNA upstream 43896 50194148 ~ 50194376 (-) True G410896
TU466066 lncRNA upstream 93419 50243671 ~ 50244020 (-) True G410963
TU466154 lncRNA upstream 134796 50285048 ~ 50286664 (-) True G411046
TU466185 lncRNA upstream 178393 50328645 ~ 50328922 (-) True G411077
XM_021603239.2 mRNA downstream 481396 49657986 ~ 49663582 (-) True LOC110523994
XM_036977752.1 mRNA downstream 773990 49088535 ~ 49370988 (-) True col27a1a
XM_036976507.1 mRNA downstream 1190109 48889781 ~ 48954869 (-) True notch1
NM_001135695.1 mRNA downstream 1190157 48881393 ~ 48954821 (-) False notch1
XM_036976505.1 mRNA downstream 1229571 48882462 ~ 48915407 (-) False notch1
XR_005051756.1 mRNA upstream 280468 50430720 ~ 50468722 (-) False LOC118964617
XR_005051755.1 mRNA upstream 280468 50430720 ~ 50468752 (-) False LOC118964617
XM_021603243.2 mRNA upstream 675357 50825609 ~ 50987810 (-) False LOC110523998
XM_021603244.2 mRNA upstream 675357 50825609 ~ 50987810 (-) False LOC110523998
XM_021603245.2 mRNA upstream 705838 50856090 ~ 50987810 (-) False LOC110523998
TU465237 other downstream 568522 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 1787413 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 1787738 48353302 ~ 48357240 (-) False G408782
TU466579 other upstream 468639 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 572062 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 572907 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 1029506 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 1223213 51373465 ~ 51377130 (-) True G412372

Expression Profile