RNA id: XR_005051755.1


Basic Information

Item Value
RNA id XR_005051755.1
length 1904
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC118964617
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50416344 ~ 50468752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGTTGGCTTTCTCTCATGCCTTTCCACACGGTGTACAATCGCGGGATTGTGGCATCACTGCAGATCGGAAACCGGCGGGTTAGGACGTCAACAACAGCCAACAAATTATTAGAAATGAAGACCATTTGTGAAATGAAGTTTTTCAGGTTCCTGGCCACATATGTTCTCATGTATTTTCGAACGGACTTTCTCTGACTGTTGACCGCGGAAATCCGTGAACGAGGTTATCAGAGAGCTGCGATAAGAGAGGAAaacggagaggaagagaagcAGCCCGACGCGTGTGAAGGAATGGAGTAAACCCCGGAGCAGAACCagaggaaggagggatgactGCCGTGAGAtgaaagagggatagagCAGGTCACAGAACAACTCGAGAGACCATTCAGCTGTGAAGAGACAGAAGAAGCCAGAagatcacacaaacacacccaaagAGGACGAGACCAAGAGGAAGCAGAGAAGATGTCTGCAATTCATTTCCAAGCGTTCAGTCTCTCTACATATATTTCACGTGggtgagcaatatgagatggttTCAGTCATTTAAGTATAATAAAACACTCAAAGTTAAATAGCCATCCTCTTATAACAACAGGTAAATGGAGGCGTCTGAAAAGTGACTTAAGACATAAGGGACAATGGCCATGTCTTTGTGGTGTCCTTctagctctgagagagagagagaaaataaaagagggatgagagagagaataaaagagggatggagaataaaagagggacagggagagaataaaagagggaagagagagagcgaataaAACAAGAATGAGTAGGAGAATAAAAGAGTGATGAAGAGTGAGAATaaaagagggatggggagagaataGAGGtatggagaaagggggagaatagATGTGGGCGAGATaataaaggagggatggagagagagaataagagggaTGAGCGAGAAATAGGGAGAataaaagagggatggagagggagcaATAGAGTCCCAGCTGCTCATTGCCATGGCCGGACTACTGCTTTTGGGGCCCGGGGCACCGACCTCCAGGCGGGTCTCTTTTGAGAAActgcatttcaacacattttgtGTTGAAGAAAAAGCAGTTTTGTAATAGTATTCTACACATTTCTCTACACAAGAGAAAATTTTAGTTTTTCTGTTTTTATAGCTCATCTCATGCTATTGTTcatattttgccatgaggctgagagaaagtTTTGAAATTTTATAgctaattttctgcaattctacacattttgctatctGGGTGGTGGCCCCTGACCTCCATTCGGTAATCCAGCCCTGCCTATTGCTCTCCTCATCTTTCCTCATCTCGAAGCAGCAAACTGTCAGCCCGACTGTCAGCCCGACTCACCATCAGGCCCTGTTTTCCCCGGTGAACATTCAACGCTGTCGGTGAGTTTGAGTTAAATTGACAAAAACCATCGACCGTTGAGTGTACCCTGTGGCCAGCCCAACTCTCAATGTGACCAGAGGAAGAAGGAAGATGAACACTATGGCCCTATCTGCCTCTCCACCCCTCTGCATCTACCCccctcctaaacacacacacacacacacacacacacacagagaaaccaaTCCTCCAGCCTCTAACCACAGCAAAGGTCACAATCAACATTCATTGCTGTCGGTGGGTTTAACTAAGTGGAAAAGCTCGCTGAACAATGAATGCTACTGTGTCCCCGATTTCCACGCCAACCAAACGTCAGAGGGGATATCGTCCGGATGTGCTGATTATTGTGCATATATATTATGTATTTCCCCCACAGGCTTGTATGGAGAGTGTAAGTAGACATAGCATCATATAAAATCTTGATCATGCTTGTTGGAGCTTTCTTATGTGGCAATGGGAGAAGGGGGAATAAAATGTATATATCCAACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466196 lncRNA downstream 92905 50337541 ~ 50337815 (-) True G411088
TU466185 lncRNA downstream 101798 50328645 ~ 50328922 (-) True G411077
TU466154 lncRNA downstream 144056 50285048 ~ 50286664 (-) True G411046
TU466066 lncRNA downstream 186700 50243671 ~ 50244020 (-) True G410963
TU465998 lncRNA downstream 236344 50194148 ~ 50194376 (-) True G410896
TU466504 lncRNA upstream 93713 50562465 ~ 50562731 (-) True G411385
TU466541 lncRNA upstream 121056 50589808 ~ 50590070 (-) True G411422
TU466550 lncRNA upstream 125966 50594718 ~ 50601239 (-) True G411431
TU466561 lncRNA upstream 136514 50605266 ~ 50605497 (-) True G411441
TU466575 lncRNA upstream 145006 50613758 ~ 50614002 (-) True G411455
XM_021601323.2 mRNA downstream 280468 50144978 ~ 50150252 (-) True LOC110522869
XM_021603239.2 mRNA downstream 767138 49657986 ~ 49663582 (-) True LOC110523994
XM_036977752.1 mRNA downstream 1059732 49088535 ~ 49370988 (-) True col27a1a
XM_036976507.1 mRNA downstream 1475851 48889781 ~ 48954869 (-) True notch1
XM_036976505.1 mRNA downstream 1515313 48882462 ~ 48915407 (-) False notch1
XM_021603243.2 mRNA upstream 356857 50825609 ~ 50987810 (-) False LOC110523998
XM_021603244.2 mRNA upstream 356857 50825609 ~ 50987810 (-) False LOC110523998
XM_021603245.2 mRNA upstream 387338 50856090 ~ 50987810 (-) False LOC110523998
XM_021603246.2 mRNA upstream 387338 50856090 ~ 50987810 (-) False LOC110523998
XM_036977755.1 mRNA upstream 470965 50939717 ~ 50987810 (-) True LOC110523998
TU465237 other downstream 854264 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 2073155 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 2073480 48353302 ~ 48357240 (-) False G408782
TU466579 other upstream 150139 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 253562 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 254407 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 711006 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 904713 51373465 ~ 51377130 (-) True G412372

Expression Profile