RNA id: XM_021603245.2


Basic Information

Item Value
RNA id XM_021603245.2
length 5460
RNA type mRNA
GC content 0.50
exon number 25
gene id LOC110523998
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50825609 ~ 50987810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttgcgacatggggccaaacattatcatgctgaaagatAAGGTGAatgcggcggatgaatggcatgaaaatgggcttcaggatctcgtcacggtatctctgcattcaaattgccatcaataaaaagTAATTGGGTTCGTTGTCTGTAtattatgcctgcccataccataaccccattgCCACAATGTggcactgttcacaacgttggcatcagcaaactgcagtcaggtcaagaccccgtTGAGGACTACGAGCACAGaggtgagcttccctgagaccaTTTCTGACAGTTAATGCAGAAATTCTTCAATTGTGAAAacacacagtttcatcagctgtcctggtgactggtctcagatcaacccgcaggtgaagaagcccgatgtggaggtcctgggctggcatggttacatgtggtctgcccttgtgaggccggttggacgtatggcgaaattctctaaaatgacaacATAGGCGGCTTATGTTAGGGACATGAACATTCCCAGGCAacaaacagctctggtggacatccctgcagtcagcatgccaattgcatgctcctcaacttgagacatctgtggtgttgtgtgacaaaacagcacattttagagtggccttttattgtcccctgcaAAAGTACACCTCTGTAACGATTATGCTGTTTAAACAGCTTctttaatatgccacacctgtcaggtggatggattgtctttgCAAAGtggaaatgttcactaacagggatttaaacacaTTTGTACACAAATGTGCGTAACATTTCTTAGAtcttttatttctgctcatgaaacttgggaccaacactttacatttatatttttgttcagtatactttatTTTGTCAGACAGGGATTTCTTCAGATTGTAAAGTACTTTGATAAAATGTGTATACTAATTGAATTGTACTGCAGTGGATTGTAAACTATTTGGGCAATATCTTCTCATTTTGGCATTTATACATGTATACATGAAAGCGCAACAATTTTCTGTATTGTATGTAGCTCACTCAATGCTGTTAGAGGTGTCCCATATCACAACTTTTTCTGAGTGGTTTCATTCATTTGATCAACTATACTTTGCACTTAAACCTTGCACAAAGTacttgtcttttttttttgtctcatgACACTTTTTGTATCTCTTGGTAAAGATTTGATACCTCACAATCATGTCACAATTTGAAAGTGAGCATAATAAATGAATATTTCTGGACTTTTTTGTTTAGCTTTTTCGTCTGGTCTCCATACATGCATATTTTGGTCTCGTTTTATGCATATTGTGCAACAGCTTGTGAGTAAGTTCGTTATTTTTCCCTCAGCAGAGCTTGAAACGGCTCCCTGCTTTTATACCCACCCTTCGCGCTCTCAGGCTCTGCATCACTTCATAAAATCTGATGTCACCTAGGAGGTTCCCTCAAACTCATGAAGAGTAAATCGAATCTACTACTTTTGGGTTGCAAACAACGACCAATTTGTTTTTGCTAATTACTTTTGTTGAGAAAATGTAGCACAGGAGGATTCATTGATGAAAGTATTTTAAATCACACGACGACTTCGAAATGTCGATGGAGGTGGACTAAAGAAAACGCACGAAAACTTGAGTATTAACGGATGGTGTCCGATCTCAGGATGCAGTGGTTTTGGATATTATACCCCAATTTACTTATTTGGTTTCACCACTGTACATCAGATACAGCTTTGACGTTGGAGAGCAGGACCCTGTTCACATACGACGAGTCCTACTACGAGTACGTACCTGACAGGCTACCGTGGAATGGGGCCGGACGCCTCTGTAGCCAGCGCTCGGGGGCCTTAGCCACAGTATCCAACACCTTCGAGAACCGAGAGCTCACCACCTTCTTAAAGTCCCTGAACATAACCCACCCCGTGTGGATTGGCAGGAAAGTCATGACACACTTAAAGAGTTCCACCGAGACCCTTATCCTGGAGTTTGACGGGAGATCCGACGTGAAGAACGCGCGCCTCCTGCACAAGTTCCCCGCCATGTGCGAAGTGACCGTTTGCACCCGTGTCCGCTTCGATCCGGCCTGCTACGGATTTTCCACTGTCTTCTCTTATTCCATCCAGTCATTCATTAATGAGTTCCAGCTCCGCGCCAGGCTGATCCAGGGCCAGCCCGTCCAGCTGGCTCTGTTGGTCCATGGCATGCACGGGCCCTACCAGGAGGCCTTCCACCATGATGGCTCCTGGCACTCACTGTGCGTGAGCTGGTCGCGCCACGGTGGACGCTGGGCCCTGTTTGCCAACGGCCGCCCGGTCAACCGGGGCGACAGCCTGTACAGCGCAGGTGACGTGGGCCCTGATGGCCACTTCATCCTGGGCCAGGAGCAGGACTCGTTCGGGGGCTCGTTCAAGAGTGCAGAGTCCTTCTCGGGTAGTCTCACGCAGCTGCACATTTGGGAGCGGATGTTGAACGACAGCGAAATCCACACCATGGAAAAAGAGTGCTCTCCCGCCTCATCTGGGCTGGTATTCAAGTGGAGCGCCACAGTCCTGGAAGTGGAGTCCTCCCTGAAGAGGCTCTGGGGAGACTCGCCGTGCCAAGCTAACAGCAGTGATTTGGCTGACGagttcctgtactccctgttggaTTCAGATGTGGTGCCATATCACAACTTATCTGAGGTGGTGGATGCACCTCAGGCTGGAGAGTGTGTCACCTTTGACCCCTTGAGTGGAGGCTGGGGCTTAGACGTTTGTGTCAGTCAGAGAGGTGCCATCTGCCAGTTTGAGAAAGAGGTGTTGGACATCTTCGGCTTTCCCAAGACAGCATTTTTCATTAAGGTGATTGAGGACATGAGCATGAACGCGTCGTCTGAGAAAGACTTGGTGTCGCTGAGCGGACTGACTACCGTGCTGGTCAGGGTCCTGGAGGCCAGTCCGGACATCCTCACGTCCACTGATGTCCTCTACCTCACCGAGCTGATGAAATTGgaggccaccaccaccacccaggaGGTCAACCATGCCCAGGGGGGCCTAGACTCTGCCGAGGCCATGGTGTCCATTGCCACCAACTACCTGAAACTGGCCAGTCTCATCCTGGACTCTAAGAGGGCCACCCGGTGGCTAGGTCGGCCGGAGGACGTTACTGTGGGACCATTCACTGTGGTGGAGAGCATTGATAAACTGACTGGAGCTTTAGCAGATGTGCTATCTGCCGAGTGGAAAAGCTTCACACTCTCCACGGAAAACATAGATGTGCACGTGGAGGCACGGACGCTGTCCCAGATGAGCTGCAGCTGTGTGTTTAAACCATCAGTGTTTGGCGGCCACAGTAGAGGTAGTGGCCAGGACGAGCTGCTCATCCCCGACACGGAGGTCCAGAGACTACATGACTTGGGTCACAAGGAAGTGATGTTCATCCATACGTACTACAGCCATCTCATGGAAATCCAGTCTAGGATGGAGCAGGACACTTCTCCAGAAGACCAGAGTGAAAACACAGGTGTCCTCCCTGGTCGCTTGGCCACTGCAGTCATCTCAGCCACGGTTCGAGACCCCTCCAAGGCCCAGAACATCCCAGTGGCCATCCACTATACTTTGTCCTCCTCGCACGTGGTGGAGTATTCGCAGCGAGTCATGCCTGTTTGCGTGTTTTGGAATTTCACCCTAATGACTGGGAATTCTAACGGCTGGTCCAGCGAAGGTTGCAGAGTGACTCACACGAGCTCTGATGTCACTTCCTGCTATTGTAACCACACCACCAACTTCGCTGTCCTGATGAATTACATGGAGTCCAAGtGGACTCAGGAGGAGGAGGATATTTTGACGAAGCTGACGTTTATCGGCTCTGGGGCCTCTCTGTGCGCGCTGGTGTTGACCTTGATGCTGTTCACCGTGCTGGACATTCCCAAATCGGACAGGACGTCTATCCACAAGAACCTGTTCATTGCGCTAACCTGTGCCCAGATAGTCCTTCTCTGCGGTGGCTCAGCTGTCAACAACAAGGTGGCCTGCACCCTGGTGGCGGCCCTGCTGCACCTTTTCTTCATGGCTGCCTTCAGCTGGATGCTGGTGGAAGGACTGCTGCTCTGGAGCAAAGTGGTGGCGGTCAACCTGAGCGAGGACCAACACATGAAGTACTACTACCTCATTGGCTGGGgTCTGCCAGTGCTGATAGTCACCATCACCCTGGCCTCTGCCTCAGGGAAGTACTCTGCTGATGGCCACTGTTGGCTCAGTGTGCAGAACGGGGTCATCTGGGGCTTCGCAGGCCCTGTCATTTTCATAATTATGGTGAACATCATGGTTCTGATGCGGGTGGTGGTCATCACCATCTCCACAGCCAAGAGGAGGTCCATCATGCTGGCAATGGATAGCAGTCCTGTGGAGCAGGCCTACGAGCAGATCAGGGCTGCAGTGAAAGCGGTGCTGGTGCTACTGCCAATCCTGGGCCTGACCTGGCTCTGTGGCGTCCTGGTGCCCTTCTCCATAGTCATGGCCTACATCTTCATCTTTCTCAACTCACTGCAGggcctgTTCATCTTCCTGATATATGGGGTGTACAACACAGAGGTTCGGAGCACAGTTAAAAGGATCAAGGAGAGAAGAAAAGCGCTACGTTTTTCAAACTGTGCCAGCTCCAGACCCTCCAGCTCATTGACCAGCTCCCGGCCCGCCAGCTCCCCCACGCCCTCCCCCCAGGGCCCCCAAGGTCCCAGCCTGGACGAAGGGGGGGATAAGACCTGCTCCGGCCAGCCCAGCCCACTCCCCAACCTTACCTACCCCCACACCCCAGGCCCTGTGGAGGAGAACGCCAACAGAGGTCAGCTGTCCATTCCTTGTGTCCCAAAGAGCCTAAAGGATTCCCACAGTCATGCTACAGGTGCCTTGATCCCCAGAATAcaggagaggaagagtggaagagCATTACGGTGCGAGACGGTCATGTCATCCAACATCTGAGAAACCTGGGGCTCAGTGAtacttatgcacacacacacactcaagtacATATCGTATAcatatacgcacgcacgcacgctcgctCGCACAGACACAAACACTTATAATTGAGAGACCTACGTCCCGTTTTCTTGCAGTTGCCTAATAGGAATGGAGATTTTTTTTAGATGTTTTATTGCGTCACTACAGTTGGATTCAGATGTTTTATTGCAAATTAAAAAGCTGAAAGAGTTACCTCTACCTTTTCTGTGAATGAGCAGTGTTTGCTTTTTGGATTTGGGTGTGGCACTCTAGTGAGTAAGGCTTCAGTGAATGGGTGTTGGTCAGGCAGATAGTATGACAGACAGGAAAGGATCATCCCGGGGTCACCACAACAATTATCACTTAGTGTCCACAAGGTAGAGAGGgtcacagtgccttcagaaagtattcacacctatTGACTTTTTCaagatgttgttgtgttacagcctgaatttaaaatggattaaattgagattgttttttgtcattggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467183 lncRNA downstream 30694 50824522 ~ 50825396 (-) True G412012
TU467083 lncRNA downstream 134868 50720788 ~ 50721222 (-) True G411927
TU466663 lncRNA downstream 175461 50680378 ~ 50680629 (-) True G411543
TU466662 lncRNA downstream 175971 50679546 ~ 50680119 (-) True G411542
TU466661 lncRNA downstream 176691 50679121 ~ 50679399 (-) True G411541
TU467318 lncRNA upstream 6356 50994166 ~ 50994638 (-) True G412145
TU467319 lncRNA upstream 7286 50995096 ~ 50995522 (-) True G412146
TU467322 lncRNA upstream 9054 50996864 ~ 50997191 (-) True G412149
TU467324 lncRNA upstream 10369 50998179 ~ 50998757 (-) True G412151
TU467355 lncRNA upstream 57193 51045003 ~ 51045210 (-) True G412181
XR_005051755.1 mRNA downstream 387338 50430720 ~ 50468752 (-) False LOC118964617
XR_005051756.1 mRNA downstream 387368 50430720 ~ 50468722 (-) False LOC118964617
XM_021601323.2 mRNA downstream 705838 50144978 ~ 50150252 (-) True LOC110522869
XM_021603239.2 mRNA downstream 1192508 49657986 ~ 49663582 (-) True LOC110523994
XM_036977752.1 mRNA downstream 1485102 49088535 ~ 49370988 (-) True col27a1a
XM_021603252.2 mRNA upstream 79 50987889 ~ 51039285 (-) False kif14
XM_021603253.2 mRNA upstream 79 50987889 ~ 51039285 (-) True kif14
XM_021603259.2 mRNA upstream 164470 51152280 ~ 51173859 (-) False LOC110524002
XM_021603260.2 mRNA upstream 164470 51152280 ~ 51173859 (-) False LOC110524002
XM_021603261.2 mRNA upstream 164470 51152280 ~ 51173859 (-) False LOC110524002
TU467086 other downstream 132013 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 133029 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 236915 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1279634 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 2498525 48353711 ~ 48357565 (-) True G408782
TU467428 other upstream 191948 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 385655 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 570568 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2629873 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2629928 53617738 ~ 53618864 (-) True G415256

Expression Profile