RNA id: TU466908


Basic Information

Item Value
RNA id TU466908
length 3036
RNA type TUCP
GC content 0.40
exon number 4
gene id camsap2a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51059834 ~ 51153381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCTCTGCAGCTCAGTGTGGCTTCTTATGGTAGACTAGAGAGTGTACTAGTTCTGGTTGAGATCTGCATGCCAACTAGTACTATTAAGAAATTGCTTCATTATGAAAGCAACTTCTTTACAATCCAGTAGCTAACCCTGCCTGATTTCTTAACCGCTTTGCCAAACCAATTCAACCAATTTGATCTTGTAATGATAATGTGAGGCTTGAATCGATCTCTGATAATCTGGCAAGGACATCTCATTATGCTATGTGGGACTCTGTATGGTTTCCATGGCATCCATCATCATTCTTTGACTAAGAAAGTGAACTCAAAATCAAAATCCTGCCAAATTTAAGGAGCCATACAgagatatgtgtgtgtttgtaaacaTCAAATGATGCTGCAGATAGCTTTGACAAGGTGGGCACAAAATACTGTGGACGGACTGTGTTGTGATCGTGGTGTAACGGTGTTGTCCCATCTTGTGCAAAACTTGTTTCACATCCAGGTTCACGACCTCGTGTTTTTTCAGTCTCCAGCTTGTCTCTGGCCTCGCTCAACCTGGGAGACAGCGACAGTGTGCACTCTGAGAAGAGAACACCAAGgcctgATTCTGCAGATGGTTTTCTGTCCCCTTGTCGATCTGGGAGCCGGAATGGGGAGGACGATTGGGAGAACGGTTCCACCACCTCGTCTGTTAAATCTAACACAGAGTACACCGGACCCAAATTGTACAAGGAGCCAAGTTCCAAATCGAATAAGCATATCATTCAGAACGCACTGGCCCACTGCTGCCTGGCAGGCAAGGTCAACGAAGGCCAGAAGAACAAGATCCTAGAGGAAATGGAGAAATCCGAGGCCAACAACTTTTTGGTGTTGTTCCGGGATGGTGGTTGCCAATTCCGTTCACTGTACACGTACTGCCCCGAGACGGACGAGGCCACCAAGCTTACCGGCATTGGGCCCAATCGGATCACCCGTAAGATGATTGAGGGCCTCTACAAGTACAATTCAGACAGGAAGCAGTTCAGCCAGATCCCCGCCAAGACCATGTCTGCGAGCGTGGACGCCATCACGATCCACGGCCACCTGTGGCAAACCAAGAAACCAGCCACCCCGAAGAAAGTGGTACCTGCCAAGCCCTAATGGATCTTCCTGTACACTCCCAGCCACCCCCACCATTTCCCTTCAAATGGAACAGTCCACATTCAATTTGCACTTCACTGTACATATCCATGAGGATTCAGCACCTGCAATGCCAGTTAGATGAATGCATACttctgtttgtgttgttttgttatCTCTTTTCATTCCTGTTCATTTTCCTTTAAAATTTCAAACTGGACATGGGGACTCAGTTAAAGATATGCACAACTGGAATGTAAAACACTATTTAGTTAAGAGTTGTAAATGGATATCACTGATGTGTTTAGTACAAGAGATTGTCTGGTTTTAGCCATTTTATTACAGCAATGTGTATGTGGTTTTGTATATGCCAAAAGAGAGACAAAAAATAAAAGATATGAATGCCATATGTTTTATTTGGCACACTGAAGCACTGAATGTTACTCATCTGTATAGACAGAATGTTGCTTATCTGTTCAAATGTGTGGCCTTAcgcttgttttgtttttgtatgtCAGTGCAATGAGCTGATTGTAAACCTAGTGCAATCAGCTCAGAGACTTTTGTATGCTGTATTCTGAGGTGACAACGCTTTTTCCATGTTTTAGGTTCAAATGCAAGCTAATAAGTCTGCATAAGCTACACACAACATTGAGGGCCAAAAAACAAGAGCAAAAAAACCAACAAGCACACAGCTAGTGTTAGCCACCCAATACATTGCACGACTAGGccaagtgttgttgtttttttccagCTTATCCCACcatttgaaaaatgtgttttaaagaACACATCTTAAACCACACTGTACTTTCTTAATGCTGTGTGTTCACAGCAGGTTTGTGAACTAAAAATAAACATATGTTTGTACGTTACCTCCTTTCAATTGTCACAAAATTGACCAGATTTGGTGAAATGTCTGTCTGTAAATGAAGTTTCTTAACTATGGATATAAACTTATGATATAGAACAATTTAATGTTATTAAGGATTGTGATTTATACTTTGGACTATGAAAATGGACTACAGCCCTAGTTAGGACCATTACATGAATTTTACCATAAACAGTAATTATTGTTGATTCCGTTTTAGTTCAGTCAAAAATGTTTTCAGAATTGTATCTTTTTTTAAATTCTCAATGTCAAATTCCTTGTCAAAAGTTTGTTTATAGGATACTGCTTGACAGTGAGATTAACACACAGCTTGTATTATTTTGCATACTTATCAGGTATAGAAAAATACTGATTTATTTCATTTGCATTTAAGTATTTCAAGACAATTATGTATCACATGTTGTGGTAGATGCCACACTCATTTGGTACATTTTAGAGACCCCACATCTACTGCACACATGGAGACCAGACTGATGTTCTGTAAGGCAAATATTTTTTCCCCTTCCCTTATAGCTGACTGAAGGCAGAATGTGGCAAAGTTTGTCACTCCAATACGGGTAGAGGCTTCTTACTGTCTCCCACCAGCGTCAACACTTTCCTTTTGTCTATTAAAGTAGCCTCGTCGAGCAACAACTTGTGTAGGTTGGGGATTAAAGGATGAAGATATCACAAACATACAGTACTCCCCACACCCTATACGATTCAAACATTGGTGTTTGTTTTTCATTGGGGTATATTTATAGAATTACCAAAAGAGAAGTTATGTGTCTCTGGAATTTTGTAGAAAATGATATTGCTATGGGACTACTGTTACAGTTGTCTTATTAGGCCGTTTAAGGCTAAGATTAATGGCTATTTATTTATAAATGAGTGGACGTTGTACAGTGTTGCCGTAAATTAGTCTGTCCATCCTCCTGATGAAGCATTGCTTCCATTTTGTTTATCAGACCGTCTGGTGTCATTCAACATATTGCTGAACATTGTAGGTttgttttgtttctcttttgCATTGAATAAAATTAAGCATGGCCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466938 lncRNA upstream 76296 51053841 ~ 51054068 (+) True G411792
TU466930 lncRNA upstream 90364 51039785 ~ 51040000 (+) True G411784
TU466872 lncRNA upstream 132526 50997610 ~ 50997838 (+) True G411748
TU466870 lncRNA upstream 134820 50995046 ~ 50995544 (+) True G411746
TU466864 lncRNA upstream 141507 50986586 ~ 50988857 (+) True G411740
TU467473 lncRNA downstream 124541 51262925 ~ 51263141 (+) True G412293
TU467477 lncRNA downstream 126919 51265303 ~ 51265532 (+) True G412297
TU467483 lncRNA downstream 131916 51270300 ~ 51271145 (+) True G412303
TU467503 lncRNA downstream 145230 51283614 ~ 51291740 (+) True LOC110524004
TU467543 lncRNA downstream 246103 51384487 ~ 51384908 (+) True G412354
XM_021601246.2 mRNA upstream 305423 50729102 ~ 50824941 (+) False nr5a2
NM_001124236.1 mRNA upstream 308484 50737486 ~ 50821880 (+) False nr5a2
XM_021603242.2 mRNA upstream 1057106 49889517 ~ 50073258 (+) False LOC110523996
XM_021601391.2 mRNA upstream 1387534 49736646 ~ 49742830 (+) True LOC110522958
XM_036977753.1 mRNA upstream 1397819 49694233 ~ 49732545 (+) True LOC110523995
XM_021603268.2 mRNA downstream 145152 51283536 ~ 51289855 (+) False LOC110524004
XM_021603267.2 mRNA downstream 145152 51283536 ~ 51291754 (+) False LOC110524004
XR_005051945.1 mRNA downstream 257193 51395577 ~ 51395631 (+) True LOC118964752
XM_036977763.1 mRNA downstream 281046 51419430 ~ 51435491 (+) True LOC110524007
XM_036977765.1 mRNA downstream 298564 51436948 ~ 51560493 (+) False LOC110522961
TU466639 other upstream 466724 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 1206766 49889400 ~ 49923598 (+) True LOC110523996
TU464173 other upstream 2148593 48948138 ~ 48981771 (+) True G409191
TU463909 other upstream 2488749 48627030 ~ 48641615 (+) True setd9
TU463204 other upstream 2966477 48150175 ~ 48163887 (+) False LOC110523980
TU468094 other downstream 663866 51802250 ~ 51802820 (+) True G412859
TU469325 other downstream 1623005 52761389 ~ 52761729 (+) True G414007
TU469359 other downstream 1640133 52778517 ~ 52779479 (+) True G414041
TU469816 other downstream 1973799 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 3039545 54177929 ~ 54183430 (+) True G415582

Expression Profile