RNA id: XM_021603260.2


Basic Information

Item Value
RNA id XM_021603260.2
length 4241
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110524002
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51152280 ~ 51174432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACGGATGATGGCCAGGTCATGCGGTTTTGTGTTTCTGTTTAGGCCTCATTACATTTTTGACACTGACAGCGCTCGTATTGGACCACACCAGTCACCACTCCTACTAGCCAAAGTGAATGCGACGAGATAATGTTGAGCCACTGGCTGTAAGCGGCCGGTGACTTGTGTGTACTGGAAGTGGACTTGGGGGAAGCTGATACCGTATTCGGTTTCCCCCCGGTTCGAGGAAATGGAGATTACGGCGGAGGCTGAAGCCGAGGAACGCAGGAGGGAACACTGGAAGCTGCTCTCCAGTCTAAAGACCACGGTGGAGGGCCTGGTGTCCACCAACAACCCTAATGTGTGGTCTCGCTATGGGGGTCTACAGCGGCTGCACAAGGACATGAACCACATCCTCAGCCATGGCCTCAAGCACGAGCAGGTGTACTACAAGCAGAAAGACTACTGGCCCTTTGTGTGTTGTGTCCGCTACAtcagccctcacctggcctcACATGTAGAACAGTTCAGTAAGCTGGAGCCCGTGCTAAACAGGGGTGTACAGAGTGTTGGGGAAGGCTACAAGGCCGAGCGCTGGCTATTGCACAGCCTTCAGGTCCATCTGCTCTCCGCCCAGCTCAGACCCCTGCTCAAACACCAGGAACACACCCGCAAGTACTACAACGagGATGCTTTTCTCCTAAAAGAGCCCCATGTGACGGCCATGTTTCAGTATCTGGAGGCCGTGGAGCAGAACAACCCCCGTTTGCTTGCACTCGTTGACACTGTCAAGCTGTCCACTCTGAAGGGCCCTCCGTGTGTGGGAGGCCGGTTGAAGAGCCAGAGTCTGTGTGAGCTGCCTGGGGCCGGGGGAGGCTGGAGGGCCGGGCTGGGCAAGAGCCAGGGGCCCCCCAGGGAAGAGCTCAACTGCAGGCTCACCACCTCCCAGTGCTCCCTCTCCCACCGAGACAGTGGACACACACTAAACAGCATAAACACAGGGGTCATCTCAGAGAGGAActcgggtgaggagagagagagagagagagagagagagagacggtcggCCACATTAGAGAGCAACACAGACTCCATTCCGTCAGCCAGTGCCCCGGGGGCCCCTTGGGGGTGCGTGTCAGGGTCCGGGGGGGAGGGCGAGAGGGGTGTGACTCCTCCCCGCCCCTCGGCAGCTGTCCCCCACATCGCCCTGACCGAGCCCGCCTCCCCAGGCCCTGCCCACTCAGACACCCTAGACTCTGGCGAGGGCGACGACGGCCCAGAATACCTGGCCATCGGTAACCTGGTGCAACGCTGCAATCGCCGTGACTCCGAGAGCTCCACCCCCATCAGCGAGCCCAGCAGGAATCCCGGCGGGGGTGGCGCATCAGGTGGCGAGGTTCAGGTCCAGCCCCCTAGGCGGAGCTCCCTGACTGTGGTCCCGCCTCCCGCGCCGCGAAGGTCATCCTTCTCGGAGGGACAGAGGGGGCAGGGTCGCGGGGGCAGCAGGGGGCATATCCGCTCGATGTCTGACATGGGGATCAACCACAAACATAGacatgAATCGTTGGTTGGAGTGGACTGCTGTGTCAAGGCCTACAGCCCCTTCTCCCCTGTCATCAGTGATGTCAGCACACCCAGCTCCCTCTATATGGAGTCAAATGGCTCCCAGTACAGCAGTGTTCCAGACGGCATGTTCCGGAAGCCGTCAGAGGGCCAGAGCCTCATCAGCTACCTATCGGAGCAGGACTTTGGCAGCTGTGCTGACCTGGAGAAGGAGAATGCCCACTTCAGCATCTCTGAGTCTCTGATTGCCGCCATTGAGCTGATGAAGTGCAACCTGCGGCggcgggaggaggaggaggatggcgaCGACAGCGACTCAGAGATCCAGCAGTTAAAACAGAAGATCCGCCTGCGCAGGCTGCAGATCCGACGCACCTGCCTGCTGCCCTCACAGCACTTGTTCCACTCCACAGACAGCGGAGGCTCCTGCAGAAGCTCCCAGGATTCCTTTCACATGTCCGACTCAGGCTCTGccgaggaggtggaggagtgtgagctgagagatGGCTGTGAGGGCCAGTCCCTGATGGCGGTGTCAAGAAGCGGCCTTTCCCTGTCGCTCGCCTCCCTCTTCTCAGATGCAGACATAAAGCGCAGTGTGACGTCCAGtggccgctcgttcctcacctcAGAGTCTATctCTCCGTCGTTCCTCCAGTCTAACTCGGCTGAGTCGGTGGCCATGGGGCTGCTCAGGCAGTTTGAGGGCATGCAGCTCCCCGCAGCTTCGGAGCTCGACTGGCTGGTCCCAGAGCAAGACGCACCGCAGAAGCTCCTGCCCATCCCTGACTCCCTGCCCATCTCTCCTGATGACGGGGAGCATGCTGACATCTACAAGCTGAGGATCCGGGTGCGAGGGAACCTAGAGTGGGCCCCGCCCCGCCCCCAGATAATCTTCAACATCCACCCCACGCCCAAGAGGAAAATAGTTGTGGCGAAGCAGAACTACCGCTGTGCAGGCTGCGGGACTCGCATAGACCCAGACTACATTAAGCGAATGCGCTACTGCGAGTACCTGGGCCGCTACTTCTGCCAGTGTTGCCACGAGAACGCCCAGGCGGTGGTGCCGGGCCACGTGTTGAGGAAGTGGGACTTCAGCAAGTACTACATCAGCAACTTCGCCCGGGACCTGCTGGGCAAGATCGCCGGAGACCCCCTGTTCAACCCCAACGACATCAACAGTGGCCTCTACAAGAAGAACAAAGCCCTGGAGACTGTCCGGGTTTTGAGGGTCCAACTATTCCACATGAAAAACCTATTCAAGACATGCCGCCTAGCTAAAGACGTGCTGGACCAGTTTGACAGCCTCCCAGGTCACCTGACTGAGGACCTGCACCTGTTCTCCCTCAACGACCTCAGTGCTGTGCGCAACGGAGTGCTGCCCACCCGGCTTCGAGAGCTACTGAAATTGGGTTCCGCGCACGTGGCTGGCTGTGTGCTCTGTCAGGCCAAGGGTTTTGTGTGCGAGTTCTGCAGCAACGACAAAGACATCATCTTCCCTTTCGAGCTGAACAAGTGCACACGCTGCGAAGAGTGCAAGGCGTGTTTCCACAGCAAATGTTTCCGGGCAGGCAAGGAGTGCCCGCGATGCCAGCGCCTGGCAGAGAGGCGGGAAAGGATGGCACGCAAGAACATGGAGGAGCAGGAGGATAAGGAAGAGGACGAGGGAAGCGGGAGCTAGGATGACGAACTGGACTGgagaaagattttttttttttaaagagaacaATGATTTTACTGACTGACAGGGACCCTTATTCTTTTAActtttccctccatccctctcttttccttGAAATTGCAGTTTCTGGCTACTGGACGAGCTCTGATTTTTGTTTTTCGTTTGCTTTAGTGAAAGATTCAATTTTTTTCCCTTCACCCAAAGTGACAGGATTCTTGCTTTTGTTTTTTGAATGCATTATCAATATTCAAAATATCATATTATATTCATATATTGGCTTGATTTTTATGGTTTGCTGCTCTGATTCCAAGTGCAGAtatcataataaaatagagtcctgccatgtacagtatgtatagaaGTGGTAATTTTAAATAGAACAAGGTTCAAGAAGTACTGAAATGTAAGTACTTATTACTCCACCTCCATGTTATGCTATTTTAGCCAACCCTATGTGCCTCTGTCACCAATGTTCTTATACTGGCAAAGATAGCGCCCCATTTGGTTGTTTAAGAGGAGTTGGAATGACAGGTCTTTGGAGGGAGTCTCTCAATCAGTATTGCACAGAGTTGCGAATATTTTAAGATGATGCAGTGGAGACAGCATGTTTGTGCTGCTTTGTGTGCATGTGTAAAAGGTGATATATGCATCTActaaaaaggtgtgtgtgtgtgtgtgtgagagagagagaggttgtctcTGTACCTACTGCATctgtgcagaaatgttttgcacCAGCCTGATCAGGCAATTAAATATATAATTGTTTGTCTTTGTGTAAAATATGAAGTCTTTGTTATTTTTATTGCACTTGTATGTCTGGGGTTAGGGAGGTGGCAAGTCACTCTCGGGCGTATTGCTGATGTTCATCTCACACAAAGCACATAGGTCCTCTAAAATGTGAAAGCCCTTTCTCGCTCTTCTTACTTTGCCTCGTATTGCCAACCTGATTCTGTTTTGCTACATGGATTAAACTTTGGCCTCTTGGGCTGAGGTCCAATGTTCCAAAATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467415 lncRNA downstream 2621 51139599 ~ 51149659 (-) True G412240
TU467358 lncRNA downstream 103501 51048562 ~ 51048779 (-) True G412184
TU467355 lncRNA downstream 107070 51045003 ~ 51045210 (-) True G412181
TU467324 lncRNA downstream 153523 50998179 ~ 50998757 (-) True G412151
TU467322 lncRNA downstream 155089 50996864 ~ 50997191 (-) True G412149
TU467430 lncRNA upstream 5899 51179758 ~ 51228505 (-) True LOC110524003
TU467475 lncRNA upstream 89590 51263449 ~ 51263702 (-) True G412295
TU467554 lncRNA upstream 116118 51289977 ~ 51335248 (-) True G412365
TU467613 lncRNA upstream 216586 51390445 ~ 51395338 (-) True G412422
TU467618 lncRNA upstream 223035 51396894 ~ 51405294 (-) True G412426
XM_021603252.2 mRNA downstream 112995 50987889 ~ 51039285 (-) False kif14
XM_021603253.2 mRNA downstream 112995 50987889 ~ 51039285 (-) True kif14
XM_021603245.2 mRNA downstream 164470 50856090 ~ 50987810 (-) False LOC110523998
XM_021603265.2 mRNA upstream 5899 51179758 ~ 51225814 (-) False LOC110524003
XM_021603266.2 mRNA upstream 44053 51217912 ~ 51225817 (-) False LOC110524003
XM_036977760.1 mRNA upstream 48657 51222516 ~ 51225817 (-) False LOC110524003
XM_036977761.1 mRNA upstream 48657 51222516 ~ 51225817 (-) False LOC110524003
XM_021603270.2 mRNA upstream 122858 51296717 ~ 51382148 (-) False LOC110524005
TU467086 other downstream 428203 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 429219 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 533105 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1575824 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 2794715 48353711 ~ 48357565 (-) True G408782
TU467428 other upstream 5899 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 199606 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 384519 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2443824 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2443879 53617738 ~ 53618864 (-) True G415256

Expression Profile