RNA id: XM_036977760.1


Basic Information

Item Value
RNA id XM_036977760.1
length 3184
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110524003
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51179758 ~ 51228505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCAATGCGCAACTCTCCCAGAGTGCTGTGCGTTTTTTTTGCCATCTTGTCGAGTGGTAGAGAATGAGCAGAGCCATACTTGAGCTAGCCTGCTAGTAAGTGAATTTCAGTCACAGTAGGAGTTCTAAAGAGTGAGAGAACCCGAGGACGGGGAAGCTGAACTTTCTTCAATTCAGGAATGTATGTCTACCGTAGGAGGATATATATTCCATGTGACGAGTTGAAGAAGGATATGCACTTGTTTATATGATGTCGTGCAGGCTGGTTCCTGTGTGGGAAGAGAACTAACGATAGCTATTTGGCTTTGAGCTACATTAGCTGACTAGCTTGCTAAAAGGGAGAGTGGTGAAAAACGGGGCCCGCCAGTCAGACTGAAGGATCGGCAGTATCTGCGACAGCGGCCTGCTTGCAATTCCGGGGCCGTAAAAATACCTCACACGGGAGGCCAGGTCTTGGAAGAaccggaggagaggagactgtggTATTGGGAGACTTGTCACATTTCGTGCTGGCGGAGACTAGCTAGCTTGTTACCTTGTCCGAGTTCAGAGGAAGTGTGCTTGTTCGTTTTTACACTCAGACACACTGCAACAGGAGAGGGGAGCAAGGAAGATGTCGCGTACTTGTCTCTCGTTATAAACTGTGAGTTCTTTAGATAAGTTAGAAGACTACCTAATTGAGCTCATACTTAACACTTTAATCTGGAAATAGAGAGCTGGAGTGagtaacatattaaacatgtcaAAAATGCCAGCAAAGAAGAAGAGCTGTTTTCAAATCACAAGTGTGACACAGGCTCAGGTGGCGGCCAGTAGCATCACGGATGACACCGAGAGTCTGGACGACCCTGACGAATCCAGAACCGAGGATGTGTCATCAGAAATATTCGACTTGTCCCGGGCCGATATTGACACGGGGGTATGTGACAGAAGTTCATCCGAGGAAACCTTAAACAACGTAGGGGAAGTGGGGGCTGCTGTCATGGCGTTACATTTACCTCAAGAGCAAGAGGCTGCAACAAGTCATTTTAACGGGGGGCACGCTTTTAGAAGTGCAGGCAGAAGTCATGTCAATCAAAACCTTTTAGGGGGTAGTGTGCCTGTACCAGCCGCGAGCAAGCCCTCCATTTCAACCTTGGCCTCTCAGCAGCCAACAACAGTCAATGCTGTCCCTGCTGCGAATGTCTCCCCAACAAGTGTGTCTCAAACGCCCCCAGCTGCACCTAGCACTACAACCACTGTAAGCTATAGTTCACGTTTCAGGGTCATTAAACTTGACCATGGTACAGGGGAGCCCTTCAGGCGGGGCAGATGGACATGTACAGAGTTCTATGAGAGAGATTCTGAGGGCTCTGGCATgagcaggactgtggatagcataAAACACACTGTCACCCTTGACCACAATGCAGACAGGGACACTGGGCTTGGGGCCACAGGAGACTCTGTGGTTGCTTCTAGTACCCTGTCCACACAGGCTCAAGAGTCCACAGGTGATAGTGGCTACTCCACTATCCACCATGGCCATCCTCCAGAGCCTCAGCAGCAAGGCTATGGCCTAGCGCCCCAAATAGGAAACGGGGGGAGTGCCTTCCAGCCCATGGGTTACTCAGCAGTGGTATCCCAGGTCAACGTTCAGCCCACTGTCCCCCAAACACTTCACCCTACTGGCCTCAATGGGGCGCCCCAAGGCGGCATGCTGAAAAAAGATCCCCTTGCCACGCAGGCCCAGCAGTTTGCCTACTCTGCTCATCCCTCTGGAACGCTCCCCAGTCAGCTGGACTACTTAACCCTTCACCAGCCTCAGGGCTCCAGCACTCAAACCCTCCCTATGTCCTCCCTCTCTGTGGGGCCTCCTGTGAGCCAGGGCCCCTCGCCTGTCATCACCCCAGTCGGCCCCAGTGCTCAGGTGCTGGGATTGTTGGCTCAGGCCGGGCAGCTGACTGGGTCTCTGCACAGCGGTCCATTAGACTCAGTTCAGGGGCTGTTACTGCAGGTGGGCAGCGGTGCAGTGAATGCCCCTCTCCTGCCTGGGAGTACCATACAGCACCCTGTGAGTCAGTCCCTGCCTTCAGGTGGAGTGGGCAGTGTCCTCGCACCTTCCACAGCCTCTGTTGTCCAGAACATGCCTGCCACAGTGCCCAGCGCCACCAACACCCCCCCAGGCCCAGGAGGACTCTCCCAGGTCCAGGTAGTTTCCAGTGGGGCCATGGCGGGATCTGCTGGGCAGGGCCTTCCCGCAGCCAGCCAAGAGGATGACAGCCGCAGGAGGTCGGACAACCTTCCTCAGCCCAACGCCACCCTGGGAAAAGATTTCATGAGGCCTTTCATCCCAGAGAGCCTGCAGCTGGCCAATCCCACCGTCAACAGTCTGTTCGGGATAGCCATTCCCATGGATGGGGATGAGGATGGGTATCATGttaaaatgagaagaaaaaaaacacattttagaaAACTGATTAACACTGAGGGATTAGGTGAGTATCTGGAAGACTGCCATCATGTTTTACATCACATTCTGCAGCAATGCAGTCATACTCGACATTGTGTAGTGAACACCTGTCCTTGCCAAGGCTGGTGTGAGGTATGCTATTCCTGGAATTGTTTAGCTGTATGTAAAAACATGTCTTGCAGTTGTGTTCAGAGAGAAAATTTGGAGTTTGGCAGGCGAGAGTGCGGCTGGCAGGGAAGGAGCATTGCGTCAGAGAACTGTCATCGAGTTTTGGTGTTTTTCATTAGTGCCCACAAACAGGGGGCACAAAATATGTGAGGTTAGCTGGTGGTTGGGTTGAATATATGACCGTGTTCGAGAATTGAATTTCTTAAAGACCTGAAACgtataatcattatgcttaattctaaTATAAAAATGTCCATTgttctgcatatctaagcatacctcttgagctgtctgtatcctacTTGACTAGTGGTTCTATTTTTAAAGAAACTAAATATGCATCTCTGTGtaaatctgggtaaaagatttaAAGGAGAGTCTTATGTGAGTTTTATTCTTcacatttagttattgcttggttttctaaagtctaccaaccttgccagcaggcatgccagctaagatagttagagaCACAGGCGTTGTGTGAGTTGTtttaagtttggggaagataattttcactataacaatgcacctttataataaagcattctgTGCATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467415 lncRNA downstream 72857 51139599 ~ 51149659 (-) True G412240
TU467358 lncRNA downstream 173737 51048562 ~ 51048779 (-) True G412184
TU467355 lncRNA downstream 177306 51045003 ~ 51045210 (-) True G412181
TU467324 lncRNA downstream 223759 50998179 ~ 50998757 (-) True G412151
TU467322 lncRNA downstream 225325 50996864 ~ 50997191 (-) True G412149
TU467475 lncRNA upstream 37632 51263449 ~ 51263702 (-) True G412295
TU467554 lncRNA upstream 64160 51289977 ~ 51335248 (-) True G412365
TU467613 lncRNA upstream 164628 51390445 ~ 51395338 (-) True G412422
TU467618 lncRNA upstream 171077 51396894 ~ 51405294 (-) True G412426
TU467626 lncRNA upstream 181355 51407172 ~ 51407454 (-) True G412432
XM_036977759.1 mRNA downstream 48084 51152280 ~ 51174432 (-) True LOC110524002
XM_021603262.2 mRNA downstream 48656 51152280 ~ 51173860 (-) False LOC110524002
XM_021603264.2 mRNA downstream 48656 51152280 ~ 51173860 (-) False LOC110524002
XM_036977757.1 mRNA downstream 48656 51152280 ~ 51173860 (-) False LOC110524002
XM_021603261.2 mRNA downstream 48657 51152280 ~ 51173859 (-) False LOC110524002
XM_021603270.2 mRNA upstream 70900 51296717 ~ 51382148 (-) False LOC110524005
XM_021603271.2 mRNA upstream 70900 51296717 ~ 51382520 (-) False LOC110524005
XM_021603269.2 mRNA upstream 70900 51296717 ~ 51382751 (-) True LOC110524005
XM_036979048.1 mRNA upstream 407480 51633297 ~ 51768111 (-) True LOC110522962
XM_036977770.1 mRNA upstream 814591 52040408 ~ 52100583 (-) False LOC110522967
TU467428 other downstream 37741 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 498439 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 499455 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 603341 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1646060 49533916 ~ 49576456 (-) True G410168
TU467562 other upstream 147648 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 332561 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2391866 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2391921 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 2664943 53890760 ~ 53892906 (-) True G415420

Expression Profile