RNA id: TU467428


Basic Information

Item Value
RNA id TU467428
length 2770
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110524003
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51179758 ~ 51228505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCGGTGTCGTACAGGAAAGGCAGCGACTGCGCATTGGTCTTTGTAAAGGATAAAAAATGACAACCTTTGGGGATTAAATAGCGACATGTTTGATTATTTAATGTGTCAACAAGACGGTGGGCCCTGAACGAGTGCTTCCGGAGCCAGTGTTGTTGCCATCGATAACAAGATAGAGCAAGCAATGGATCTAGTGAAGAGCCACCTGATGTACGCAGTgcgggaggaggtggaggtgctGAAGGAGCAGATCAAGGAACTGTACGAGAGGAACTCTCAGCTTGAGCAGGAGAACGCCGTGCTCAAGTCCCTGGCCAACATGGACCAGCTCACCCAGCTGTCGTCCACCCAAATCAGCCCCGCCGGCAGCACCTCTCCGTCTCAGCAGCTACCCTCCACCAATAACGCCAATACCAACACCCCCCTGGAGGGTGAAACCCAGGCTTTCAGCCTGCCACAGCAGCCCGACGTCACCTCCGTGTGATCCCATGCTCCCGTAATACACCTCCCTGACATACGGGAGGAGGAGACCCCAACAATCAACCAACCCCTGCCTCTCCCGCCGCCTTGCAACATAAAAAAAAGAGCTCAGAACTGCATTTGATTGGTTTTTTTAGAAGccaaaaaaaaacaagcaaaatCAGCTTTTGTTTGCCACCCTTGTCTTCGACTCCTGTGAAGAGCCATGCTTCATTTTGCGTGCTGCTGTTGTCGTCGGGCCTTCCCAGTATTagacaatcatcatcatcatcatgtgatAGCATTCTTTTGGCTGGGTGTCTTGCGTTAAGTCTATGGGGAACTGGCCAAGGGAGGAGTGCGGTGCAGGGCCACGGGCGGTAAGAGGCAATCCGGGGCATGGTGGCGGTAGTGGAGGTGGTCAGAGGCCACCATAGGAAAAATGTGTCTCACGCCGTGAGAAGACCAAAACTAGTTTTCCCAGAGCCACCACACTTTGACACAAATCAAAAAATACCTTCATTAGTTCAGTTTTAATGTTTGCAGTTATTTATTTCAGGGATACTATTTTCATAATGTAAATGAGCAATGTCACAGAAATACATGTTATAAAAAATAAACCAGTTTCTCTTTTTGTTTCTTGTATGTTAGATTATCTGTCAGGCAGTCAATTGGTAGTCTAATGCAAAAAGTAGTTCCGTAAATGCAATAGGTTCTTTTAAAAAGGCAATTCCCATGGCATATCACCGCTAACACTAAAAGGCAGTTAACTTAATTAAATTAATCCAGGATGAATGTACATTTTGTGAAGAGTAAACTATTAAAAGCATAGAGGGATTGTACAGGTGAACGACAGTTTTTGAGATATGAATCGTTGGTAGTTATATTTTGATAAACCTTTGCTGTAGTTTCTTTGTTGCCAAAATTGGAAGACAGTTGCCATACTTTCCCAACGTTTTAAAAATTCTATTGCACATATTTACTTTCTGGGCTGGGGGTAAAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAACCAAAGACTCAAAGCTGTGTAATTTAATTTTTAATGCACACGTttcttttttaaacttttttttttacttccttgttttttttgtttctgtTTAGCATGTTCTGCATGATCTATAATTAAACCACTTTCTTACCTCATCTTTTTATTTAGCACTCTTATTGTAACGTAAAGTTAGTCTGCTCTGTCCTTTACCCATCGTTtacaaagagctgccagttagaaCGAGAGGAAGGAGAACGGAATGGAAAGAGAGGCGGAGAGAATGAGGGATTAAGAGGAAGGGAGAGTCAGAAGCACACACTAGCAGAAAATGAAGTTTGAGCCATCTTTTTGCTTATGCAAAGTGTTCTGAATTTCATATGCagaccaaaaaagttttaaattgCAAATGTTACTgtatttaaaggcccagtgcagtgaaAAACGTGActttatatttccacactataaggttagaataatactgtgaaaattataatccccttttagtgtaagagctgtttgaaaagaccacctgaaatgtcagcctgttttgttGGGAGGGAGCTTTGGTTTTCCATGGTGACGTCACCATgcagtaaattggttaatagaccaataaggagttccaaacctctctgccaataacagctaattttcagttttcccctccccactcaaaccactcccaggcagtcctagcaaaattcttgcttgagaaattgctcatTGCTTAAGTAGCTctttttgttttcaattaaaatggtcaaaaataaataatCACAGGAAGGTACtgaattgttacccagaaaggtTTGAttttgagatttaaaaaaatggctgcattggacctttaagtaaTGCAAACATTTAGATTCTGATTGTAGCGTACCAACACAtacttaaatttaaaaaaaactgctaGACTATAACTTACCAACTTAACGGAAACTATTGTACACATTTCACAACTCCAGCTTGAATCTGGTAAACTATTGAATGAGCATATTCAACATGCGTTACATGTCTTTTGTGCTTCCTGTACCATTCTTTGTGGCTTAGAACCAAACCAAAATTATCATCTTTAGCAGGATGAACTTAGATTTCACCTTTGCAACTgggtattatttttttattttgaaggaGATGCCATGTACATTCCAGGTGTGTACTGTGTGAACGTGATGATCACTGAGCCTTGGAGAAAATATCTTAACGATGCCCTTGTAATGTGCTGTTgtggcaacaaacaaaaaaagtgtaaaaaaaataaattactGTTTTATTAAGAATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467415 lncRNA downstream 30099 51139599 ~ 51149659 (-) True G412240
TU467358 lncRNA downstream 130979 51048562 ~ 51048779 (-) True G412184
TU467355 lncRNA downstream 134548 51045003 ~ 51045210 (-) True G412181
TU467324 lncRNA downstream 181001 50998179 ~ 50998757 (-) True G412151
TU467322 lncRNA downstream 182567 50996864 ~ 50997191 (-) True G412149
TU467475 lncRNA upstream 78674 51263449 ~ 51263702 (-) True G412295
TU467554 lncRNA upstream 105202 51289977 ~ 51335248 (-) True G412365
TU467613 lncRNA upstream 205670 51390445 ~ 51395338 (-) True G412422
TU467618 lncRNA upstream 212119 51396894 ~ 51405294 (-) True G412426
TU467626 lncRNA upstream 222397 51407172 ~ 51407454 (-) True G412432
XM_036977759.1 mRNA downstream 5326 51152280 ~ 51174432 (-) True LOC110524002
XM_021603262.2 mRNA downstream 5898 51152280 ~ 51173860 (-) False LOC110524002
XM_021603264.2 mRNA downstream 5898 51152280 ~ 51173860 (-) False LOC110524002
XM_036977757.1 mRNA downstream 5898 51152280 ~ 51173860 (-) False LOC110524002
XM_021603259.2 mRNA downstream 5899 51152280 ~ 51173859 (-) False LOC110524002
XM_021603266.2 mRNA upstream 33137 51217912 ~ 51225817 (-) False LOC110524003
XM_036977760.1 mRNA upstream 37741 51222516 ~ 51225817 (-) False LOC110524003
XM_036977761.1 mRNA upstream 37741 51222516 ~ 51225817 (-) False LOC110524003
XM_021603270.2 mRNA upstream 111942 51296717 ~ 51382148 (-) False LOC110524005
XM_021603271.2 mRNA upstream 111942 51296717 ~ 51382520 (-) False LOC110524005
TU467086 other downstream 455681 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 456697 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 560583 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1603302 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 2822193 48353711 ~ 48357565 (-) True G408782
TU467562 other upstream 188690 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 373603 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2432908 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2432963 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 2705985 53890760 ~ 53892906 (-) True G415420

Expression Profile