RNA id: XM_021603270.2


Basic Information

Item Value
RNA id XM_021603270.2
length 2603
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110524005
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51296717 ~ 51382751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATTTCCAACCCGTACGCTTGTTTATAGCTGCATTGGGGTCGGGTAGATTTCCTGTTTAGATTAAGACACCACGGCGTCTGGCGCGAGATATGACTCGGAAAACGTCATTTGAGAAATAGCCTTCTCATCCCTGGATTACAATTTGCAATTGGGATAGTGGGACAATTCTGTGTACAACGCGATTTctcatccctggattgagGTGTGAGAGCCGCCAGCACTGGGACAGTCCATCCGTGTGTCAGTCTGTGCAGGTGTGTGTCAGTCGACTGGCACAGCTCGGAATGCAAAGATGCTGTTCTCCCTGGGGATGCTGATGCTGTCCGCCACACAGATCTACACCATCTTTACCGTGCAGCTCTTTGCCTTCCTCAACCTGCTGCCCGTCGAGGCCGACATCTCTGCCTACACATTTGACAACAAAACGGGAAACTTTGATGACCTGCCTGCACGGTTTGGGTACCGGTTGCCCAGCGATGGACTCAAGGGCTTTCTGATTGGTGCACGGCCCCAAAATGCCTGCGAACCCATTGACCCGCCCCCTATTCGGGACAACCTCACTGGTGCCTTCATCGTGCTCATCAAGCGCTTCGACTGCAACTTTGACATCAAGGTCGTTAACGCCCAGAAGGCCGGGTACAAGGCGGCGATTGTTCACAACGTGGACTCTGATGACTTAATCAGCATGGGATCCAATGATCTGGATATTTTGAAACAGATTGACATTCCATCAGTGTTTGTGAGCGAAGAGACTGCCGACTCCCTGAAAAAGGACTACGCATATGACAAGGGGGGTCATGTGGTCCTCATGCCGGACTTCAGCCTGCCTCTGGAATACTACCTGATCCCCTTCCTCATCATCGTGGGAATCTGCCTCATCCTCATCATCGTTTTCATGATCACCAAGTTTGTCCAGGGCAGACACAGGGCTCGGAGAAGCCGTCTGCGCAAGGACCAGCTGAAGAAACTTCCCATTCACAAGTACAATAAAGGGGACGCCTACGATGTGTGTGCCATATGCCTGGATGAGTATGAGGAGGGAGACAAGCTCCGGGTCCTGCCCTGCTCTCACGcttaCCACAACAAGTGTGTGGACCCCTGGCTGACCAAGACCAGGAAGACGTGTCCTGTGTGCAAGCAGAAGGTGGTCCCCTCTGCGGGCGACTCAGACTCCGATTCGGAGGAGGGCGACAGCGGGCCCGATGAGAACGAGGTGTCAGAGAGCACCCCGCTGCTGCGCTCCCTGGCCTCCACCAGCGGCCACTCTTTTGGCACCATGTTGGGCGCCTCACGTTCCGAGCCCGATCAGGAGTCCTCCGAGTATGAAGACGACCACCTGGACACCAGCGACGACAGCAAGGTCACCGTGGAGACAGTGGTGCAGCTGCAGGAGCCTCGTCCTGACGACCACGACCCGGTCCGTGCCTGATTGGTTGGCCTGAGTTGACAGACAGGTGGCCGGTCCCccgcccctctctcccactcacccTATGGGGTTGCAGAGACTCACGCTGGTGGCGTGGTCAAGAGGATTTGTTTCATTTTTACATCTCCCTCCAAGTTTAGAATGCAAATCACCTTAATTCTCCATTTGTTGTATTTTTAACCTGATTACTGAAGGGTGGGACAATGTGCAGATGGTGTCGTCATGTGTTTTGGGCTAAACGGCGTCGATTTCACAGGAATGTTGCCGTACAGTAGACCGTATTTTACTCTGGTTTGTCAGTATGGGGTGGTTTTCTGCAGACATCCTCCGACTAGGGTTATACTCTATTCACTGTGAGAAAGGGCTCGATGCTCTCGTGTGCACGAGCATGCTTGACACCAACTGTGAAGGAATGCATTGAGTATATAAATAATGTATAGATCACCATAATTAACATCTTAAAACATTGATTATTTTGTAGCCTGTATATCTGTAGTCTGGGGAAGCAAAAAAATGTTATATTGTATATATTTCTGCTGTATAGAAATATCTAAATCAAAGTACTATACAGCAGCCTTTTATAAAATCGATTGAACTGaccttttccatgtgaatatatAAAACGATTGGCCATGGGAACTGGGTTTTGACAATCGGTCTCTACCCTGAGATCCGGGAGCCAGTCGCTCATCTCAGAGTATGATTTTGATGCGACTGATATGTTACGTTGACCTGCACAGACAAAATTAAGCCAAACCGGTTATGCATTCAGCCAAAGATAGGTTTGCTGTGTGTTTGACCAATGTTATGGGTAACCTCTTAGCAGTCGTGTAATACAAGCAGAGGGGGTGGGGAGAAACAGTTTTGTTCAGGTAGTACCCGCATCTACACTGCTACAAGCAGCCTGCTGTATACTTCATTTGGCTAATCTAGAGCCATCACATACCACTTCTCTGAAATGCATGATGCCATTGGTGGATAGGTCTTGCAACATGTATTTGGTTTCACGTCGTAGGACGTTCTACAagtaaaaatagtttttttaataAGACTTGAACTGTTCTATGTTGAGTCCTGTTGCCTTTTTATTTGATGTCTTGTAAACATCTTATGCTCACACATGCCTGTATTAAATTTAATTCCACTTCAATAAAGACACTGTTTGTCAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467475 lncRNA downstream 33015 51263449 ~ 51263702 (-) True G412295
TU467430 lncRNA downstream 68212 51179758 ~ 51228505 (-) True LOC110524003
TU467415 lncRNA downstream 147058 51139599 ~ 51149659 (-) True G412240
TU467358 lncRNA downstream 247938 51048562 ~ 51048779 (-) True G412184
TU467355 lncRNA downstream 251507 51045003 ~ 51045210 (-) True G412181
TU467613 lncRNA upstream 8297 51390445 ~ 51395338 (-) True G412422
TU467618 lncRNA upstream 14746 51396894 ~ 51405294 (-) True G412426
TU467626 lncRNA upstream 25024 51407172 ~ 51407454 (-) True G412432
TU467627 lncRNA upstream 27155 51409303 ~ 51409543 (-) True G412433
TU467629 lncRNA upstream 27532 51409680 ~ 51410115 (-) True G412435
XM_021603266.2 mRNA downstream 70900 51217912 ~ 51225817 (-) False LOC110524003
XM_036977760.1 mRNA downstream 70900 51222516 ~ 51225817 (-) False LOC110524003
XM_036977761.1 mRNA downstream 70900 51222516 ~ 51225817 (-) False LOC110524003
XM_021603265.2 mRNA downstream 70903 51179758 ~ 51225814 (-) False LOC110524003
XM_036977759.1 mRNA downstream 122285 51152280 ~ 51174432 (-) True LOC110524002
XM_036979048.1 mRNA upstream 251149 51633297 ~ 51768111 (-) True LOC110522962
XM_036977770.1 mRNA upstream 658260 52040408 ~ 52100583 (-) False LOC110522967
XM_036977766.1 mRNA upstream 658260 52040408 ~ 52100611 (-) False LOC110522967
XM_036977767.1 mRNA upstream 658260 52040408 ~ 52100611 (-) False LOC110522967
XM_036977768.1 mRNA upstream 658260 52040408 ~ 52100611 (-) False LOC110522967
TU467428 other downstream 111942 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 572640 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 573656 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 677542 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1720261 49533916 ~ 49576456 (-) True G410168
TU467825 other upstream 176230 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2235535 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2235590 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 2508612 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 2621583 54003731 ~ 54005673 (-) True G415464

Expression Profile