RNA id: XM_036979048.1


Basic Information

Item Value
RNA id XM_036979048.1
length 3533
RNA type mRNA
GC content 0.57
exon number 26
gene id LOC110522962
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51633297 ~ 51768111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTTTTCTTGCCCCGGTGGGCTCGGCAGGCGCCCACCCCACATCATGCTTCGGCCGGCCATCGGTCTCCCAAGCCTCAGCCGGTTCGTCAGGCTCCCACGTCTCAGCGGgatcgtcaggctcccatgcctcagccagTTCGCCAGGCTTTCCACACCCCAGCCGCATTGTGCAGTGCCCATGCCTTGGCCGGCCCTtcaggctcgcccaggtgggacgCCTGGTGGCGCCtctggggggggtactgtcacgcccgcTCTCCTGCTCTGCCGCTCGAGGGCGCCAGACTGCCTTCATTGCGCAAACCTATCACCATTATTACTCGCACCCACGCTTCATCACCGGTCACATCATGCTTCGGCCGGCCATCGGTCTCCCAAGCCTCAGCCGGTTCGTCAGGCTCCCACGTCTCAGCGGgatcgtcaggctcccatgcctcagccagTTCGCCAGGCTTTCCACACCCCAGCCGCATTGTGCAGTGCCCATGCCTTGGCCGGCCCTTCATGCTCGCCCAGGTGGGACGCCTGGTGGCGCCtctgggggggaccGGTGGTGGCTGGCCTGCTCCAGGAGTCCGAGGTGCGGGAAGTTCCTCcacccctctggacatcgagggggccccggcgtacatCATTCCTGGAATCATTTCGCTCCTGGATGAGGAGGAGCCCCAGCTAAAGGAGTTTGCTCTGCACAAGCTGAACTCCATTGTCAATGACTTCTGGGCTGAGATATCAGGATCTGTTGACAAAATCGAAGTCCTGTATGAAGATGAGACGTTTCGGAGCAGGGCGTTTGCTGCCTTGGTGGCTTCTAAAGTGTTCTACCACCTCGGGGCATTTGATGAGTCGTTGAACTATGCTCTAGGTGCAGGAGACCTTTTCAATGTCACAGACGACTCTGAGTATGTGGAGACCATTATCGTCAAATGTATCGACCACTACACCAAGCAACGGGTGGAGAATGCTGAGCTTCCCGAGGATGAGGAGAAGAAGAGCATCGATCCCCGGCTCGAGGGCATCGTCAACAAGATGTTCCTGCGGTGCCTGGGCGACCACAAGTACAAGCAGGCCATCGGCATTGCCCTGGAGACGCGGCGCCTGGACATCTTTGAGAAGACCATCCTCGAATCGAATGACGTTAGTGGCCTACTGGCCTACAGCTTGAAGGTCTGCATGTCACTGATGCAAATTAAGAAGTTTCGCAATAAGGTACTCCGAGTGCTAGTCAAGCTCTACATGAATCTGGAGAAGCCTGACTTCATCAACGTTTGCCAGTGCCTGATCTTCCTGGATGACCCACAGGCGGTGAGTGACATCCTGGAGAAGCTGGTGAAGGAAGACAACCTGTTGATGGCCTACCAGATCTGCTTCGACCTGTATGAAAGCGCCAGCCAGCAGTTCCTCTCCTCGGTCATCCAGAACCTGCGCACTGTGGGCACGCCCATCCCTGCCGTGCCCGGCTCTACCAACACGGGCACCGTGCCCACCCTGGACAACGACAGTGATGCTATGGAGACGGACGATAAGGCCGGCAGCTCCCCTGCAGGAAAAGCAGCAGACAACGATGAGCCAAAGGACCAGAATGCAAAGATGACAAAAATTCTCAGCGGCGAAATGGCCATCGAATTGCATCTACAGTTCCTCATCCGGAACAACAACACAGACCTAATGATTCTCAAGAACACAAAGGATGCAGTTCGAAATTCAGTGTGCCACACAGCCACGGTCATAGCCAACTCCTTCATGCATACGGGAACCACAAGTGACCAGTTCCTCAGAGAGAACTTGGAGTGGCTTGCAAGAGCCACCAACTGGGCCAAGTTCACAGCCACTGCCAGTCTTGGCGTCATTCACAAGGGCCACGAGAAAGAGGCGCTGCAGTTGATGGCCACATATCTGCCCAAAGACACCTCCCCTGGATCGGCCTACCAGGAGGGAGGTGGCCTGTACGCCCTCGGGCTGATCCACGCCAACCACGGGGGGGACATTATCGACTACCTGCTCAGCCAGCTCAAGAACGCCAGCAACGACATTGTCCGTCACGGCGGAGGTCTAGGCCTGGGATTGGCTGCCTTGGGTACGGCCAGGCAGGATGTTTACGACCTGCTCAAGTCTAACCTGTACCAGGATGATGCAGTAACAGGTGAAGCTGTGGGGCTGGCCCTGGGGCTGGTCATGCTGGGCTCGAAGTCGGCACAGGCCATTGAGGACATGGTGGGCTACGCCCAGGAGACGCAGCACGAGAAGATCCTGCGCGGCCTGGCCGTTGGAATCGCCATGGTCATGTACGGACGCATGGAGGAGGCAGACACGCTCATCGAGAGCCTCTGCAGAGACAAGcaggacaatgccacACAGCCAAGGACCCGATCCTGTATGTACACAGTGGGCATGGCCTACTGCGGCTCCGGAAACAACAAGGCCATCAGACGTCTGCTGCATGTGGCTGTGAGCGACGTGAACGATGATGTCAGAAGGGCAGCGGTGGAATCCATTGGATTCATCATGTTCAGGACCCCAGAGCAGTGTCCTAGTGTGGTGTCCCTCCTGTCAGAGAGCTACAACCCCCATGTGCGCTGCGGGGCCGCAATGGCCCTTGGCATCTGCTGTGCCGGGACAGGCAACAAGgAGGCCATCAACCTGCTGGAGCCCATGACTAATGACCCGGTGAACTATGTGAGACAGGATGCCCTCATCTCATCAGCACTCGTCATGATCCAGCAGACCGAGGTCACCTGTCCCAAGGTGAACCAGTTCCGGCAAATCTACTCCAAGGTCATCAATGACAAGCATGATGACGTCATGGCCAAGTTCGGGGCCATCCTGGCCCAGGGCATCCTGGATGCAGgtggccgTAACGTCACCATCTCGCTGCAGTCGAGGACGGGCCACACCCACATGCCATCAGTGGTGGGCCTGCTGGTATTCACCCAGTTCTGGTTCTGGTTCCCTCTTTCCCATTTCCTCTCCCTGGCCTTCACCCCCACCGCCATCATCGGGCTCAACAAGGACCTCAAGATGCCCAAGGTACAATACCGCTCCAACTGTAAGCCCTCCACCTTTGCCTACCCTCCGGCCCTGGAGGTGCccaaggagaaagagaaggagaagGTGTCTACTGCTCTTCTCTCCATCACAGCTAAAGCTAAGAAGAAGgaaaaggagaagaaggagaaagaggaggataagATGGAAGTGGAGGTACAGGAGGctgagaaggagaagaaagatGAGGAGAAAgcgaaagagaagaagaaggagccCGAGCCCAACTTCCAGCTGATGGAAAACCCAGCCAGAGTGATGCCCGCCCAGCTCAAAGTGCTCAACATGCCCGAAACGTGCCGCTACCAGCCCTTCAAACCGCTGCACACTGGTGGCATCATCATCATGAAAGACACcagtgaggaagatgaggagCTGGTGGAGTCCGTTTCTGCCCACGGCCCAAAGAtcgaggaggaggaacaggagccAGAGGCCCCTGAGTCCTTTGAGTACATCGATGAGTGAATGCCCTCCGCGTA

Function

GO: NA

KEGG:

id description
K03032 PSMD1, RPN2; 26S proteasome regulatory subunit N2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467858 lncRNA downstream 12621 51620386 ~ 51620676 (-) True G412637
TU467854 lncRNA downstream 16174 51616832 ~ 51617123 (-) True G412633
TU467853 lncRNA downstream 16500 51616402 ~ 51616797 (-) True G412632
TU467850 lncRNA downstream 16964 51612729 ~ 51616333 (-) True G412630
TU467829 lncRNA downstream 24135 51554888 ~ 51609162 (-) True G412616
TU468123 lncRNA upstream 59189 51827300 ~ 51827533 (-) True G412887
TU468245 lncRNA upstream 91225 51859336 ~ 51859556 (-) True G413004
TU468259 lncRNA upstream 107795 51875906 ~ 51876724 (-) True G413017
TU468261 lncRNA upstream 110176 51878287 ~ 51878689 (-) True G413019
TU468284 lncRNA upstream 138745 51906856 ~ 51914142 (-) False G413040
XM_021603269.2 mRNA downstream 250546 51296717 ~ 51382751 (-) True LOC110524005
XM_021603271.2 mRNA downstream 250777 51296717 ~ 51382520 (-) False LOC110524005
XM_021603270.2 mRNA downstream 251149 51296717 ~ 51382148 (-) False LOC110524005
XM_021603266.2 mRNA downstream 407480 51217912 ~ 51225817 (-) False LOC110524003
XM_036977760.1 mRNA downstream 407480 51222516 ~ 51225817 (-) False LOC110524003
XM_036977770.1 mRNA upstream 272297 52040408 ~ 52100583 (-) False LOC110522967
XM_036977766.1 mRNA upstream 272297 52040408 ~ 52100611 (-) False LOC110522967
XM_036977767.1 mRNA upstream 272297 52040408 ~ 52100611 (-) False LOC110522967
XM_036977768.1 mRNA upstream 272297 52040408 ~ 52100611 (-) False LOC110522967
XM_036977769.1 mRNA upstream 272297 52040408 ~ 52101949 (-) True LOC110522967
TU467825 other downstream 20735 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 256167 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 448522 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 909220 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 910236 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 1849572 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 1849627 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 2122649 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 2235620 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 2595175 54363286 ~ 54386228 (-) False G416110

Expression Profile