RNA id: XM_036977770.1


Basic Information

Item Value
RNA id XM_036977770.1
length 5470
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110522967
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52040408 ~ 52101949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGACAGCCTGCTCGAATGACTCCCGTAGCATTGTAGTGCGAGAAGTAGGAATGGGAGGATGGCTGCAGATCTAGGAGAGCTGCTGGTCCCTTATATGCCCACCATCAGAGTTCCCAAAACAGGAGACAGGGTTTTCAAGAGTGAATGTGCCTTTTCCTACGATTCGCCCGAGTCTGAGGgaggtttgtatgtgtgtatgaacACATTCCTGGGCTTTGGCAGAGAACATGTGGAGAGGCATTACCGTAAAACCGGACAGAGCGTTTACATGCATCTCAAACGCCATGTCAAAGAGAAAGCTACAGGTGCCGCAGGGGGTGCCATCCCCAGAAGAAGAAACGGAAAAGTATTCCTAGATTTAGAACTAAACCGCGATTTTAACGGAGATGAGTACGATTGTGAAGACGAGGCCAAGCTCGTCATATTTCCAGACCACTTCGAGATCCCCTTGCCAAATATTGAGGAGTTGCCTGCACTGTGGATGGAAATGTCAGAAGTGTGAGATGAAAGAGAACCTGTGGTTGAACCTGTCGGACGGAGCGGTGCTTTGTGGGAAGTGGTTCTTTGATGGTTCCGGAGGAAACGGCCATGCCTTGGACCACTTCAAGGACACTAACTTCCCCCTGGCAGTCAAGCTGGACAACCTCACCCTAGACATAGCAGATATTTATTCGTTCGACGAAGAAGAAGCAGTCTTGGACCCGCAAATATCCGAACACTTGCAACACTTTGGAATAGACATTATACCGATTCAGCGGAATGGAACAGATAATGGCCACCacaacacagacaacacaaacGGCATGCGGCCGCGAGTCAGCGAGTGGGAGGTGATCCAGGAGTCGGGCATGAAGCTGAAGGCAGTGTACGGCTCGGGTTTCACGGGCATCAAGAACCTGGGCAACAGCTGCTACCTGGGCACCATCATGCAGGTCCTCTTCAGCATCCCTGAGTTCCAGAGGGCGTATGTTGGAAATCTACAGAGGATATATGACTACTCACCTCTTGACCCCAGCACGGACTTCAGCACACAAATGGCTAAACTGGGCCACGGACTCCTCTCAGGCCTGTACTCCAAACCACCAATGAAATCCGAGCTCATTGAACAGGTGATGAAAGAAGAATACAAGGTATTAGACTGGCACCAGCCAAAGGGTATCTCTCTCAAGATGTTCAAAGCCCTGGTTAGCAATGGCCACCCGGAGTTCTCCTCCAACAGACAGCAAGACGCACAGAAGTTTTTCCTGCATCTCATCAACCTGGTGGAGAGAAACTGTGTGGGCTTGGAGAACCCCAACAACGCCTTCCGCTACCTGGTGGAGGAGCGCGTGCAGTGTTGCCAGACGCAGAAGGTGCGCTACACCCAGAAGGTGGACTACCTCATGCAGCTCCCGGCCCCCATCGAGGCCGCCTCCAACAGAGAGGAGCTGATAGCGTATGAGGCCAAGCGAAACGAAGCAGAGGAGAACATGAGGGCCCCTCCAGAGCCTGTGAGGGCCCGGATCCCCTTCACAGCGTGCCTGCAGGCCTTCACGGAGCCAGAGAACGTCCCCGACTTCTGGAGCTCGGAGCTGCAGGCCAAATCAGCTGGAGTCAAGACTTCCCGTTTCGCCTCCTTCCCAGAGTATCTGGTGGTGCAAATAAAGAAATTCACATTTGTGGTGGACTGGGTTCCAAAGAAAGTAGATTTGTCCATAGACATGCCAGACTTCCTGGACCTGTCTCGGCTCCGGGGAACAGGACTGCAGGCGGGAGAACAAGAGCTCCCAGACCTCACACCCCCCATCGTCCTCCCTGAAGACACCAGAGACAACTCGATGAACTCCTCAGATTCCCCAGAAATAGACGAGTCGGCCGCAATGCAGCTGGCGGAGATGGGCTTCCCTCTGGAGGCCTGCCGGAAGGCCATCTACTACACTGGGAACATGGGCCCCGAGATGGCCTTCAACTGGATCATAGCACACATGGAGGAGCCTGACTTTGCTGAGCCCCTGGCACTGCCAACCTTCATGGAGCCCGGCCCTTCCGTGGCCAGCTCGGGCCTGGCTGCCACCCCCCTGGACAACCATCCTCCAGAGGAGAGCATCGCCATCCTCACCTCCATGGGCTTCCCCCGCCGCCACACCGTCCAGGCCCTAAAAGCCACGAACAACAACCTGGAGCGGGCGCTGGACTGGATCTTCACCCAcacggagagggaggaggaggaggaggagactagcGATGCCCTGTCTGACATGGCCGATACCACGGAGCCCAACGACAGCGCCTTCTCCAATGCCAACACGCACAGCGACTCCACACTGTCCCCAGACCAGGACGCCTCAGGCCCCCAGATCAAAGACGGACCCGGGCGTTACGAGCTTTTTGCTTTCATCAGCCACATCGGAGCGTCCACGATGTCTGGTCATTATGTATGCCACATCAAAAAGGAAGGAAGaTGGGTGATCTTCAATGACCACAAAGTGTGTTTGTCAGAAAGGCCTCCAAAAGACTTGGGTTACATCTACTTTTACCGTCGACTGTCTAGCAGCTAGACCAAGCGCCCCCCCACCCTCCAACCTTAGAGAACCACATCCTCACAACCAGAAGACCGGAAGATGACCACAGTGGAAATTATGGAAACACTCGCACCCCAGACCAGCCAAAAAAAGACAGGAACCGCTCGACTCAGCCAAGTCACTCAAGAGCAACCGGAAAGTGCGGTCAAAAGGGAAAGCAATTAGCTTTTTGTATGTCTCTGTGATTCccgtgtgcttgtgtgtattgAAACGTGTCATTTGTCTGCGGcaagtgtcaaactcattccacggagggccaagtgtctgcggatttttgctcctcccttgtacttgattaatTAGTAAAGAcatcccctcacctggttgtccgggtcttaattgaaagacaaaacaaaaatctacagacactaggccctccgtggaatgagtttgacacccctggtctacgGCGTAGGTACAGAGGGATGTGTGCAATTTCAGTTATCGGAGTGCTCCACAGTTCTAGTATCAGCATATAAGATCTTACTATACATTTTCTATGCCTTAAGCTACTGTGCCAGTATTTTTATTGAAGTGGTATGTTTTATAAACGTCGGGCATGGTCCAAAAGTGGTCACGAATCACTGCTAGCCCTGAAAGTAGAACTCGATAAAAAGAAAACGCAATGCTGCTGGGAGCTTTGCATGTGCCATGCAGAACGGAATATTGGAGAATGTTTTGCATCTATAGGGAATTTAAAGGATATCAGGAACCCTTAACATGTGATGCAGGATAGAAAATTATGGCATTGAATGCAGAGAAATAGCCAGCATAGGCAAGTGTCAGAATAGGGATTGGATACTGAATAAGTAATACCCTTATTGGAGGGTCCGATGTCCTGTAATGAGGTTAGTCATATGTCTGGTTTTAATTTGCAGGTTTTTCTGGGCAAACTATTTTCTGTACAGTGACAATTGGACGAGTCAAGTTTCAGTTGCCAGGAGATTGTcatttttttattgaatatcTGAAAGCACTTTGACAGATTTGTTTTTATATCCCTGCCTTTTCACATAGAAATAGAACCATGAGCATAAATTGAATCAGATACCCTAAACTGATATTTTATTTTGTTCAATATGGTAAAAGCCTGTGACAATGTGGTTGTAACCCAAAAAATGACTAATGTTATATCACCTTTCTATTTTCAAAGTGTTTCTCAGACCATGTTGATTACACATAGTGTATGCATGCATACAGTATTGGTTGGCATTTGTTTGCGCGCCTAATATGATTACATTTTGTGGAAGGACAGACAATGCATTAGGTAAATGTTTGCCAATTATTGTAGTCCTCAAACACTGAGTAATACCGCATTTTAATATTCGATATGCCGCCATCTTTTTAATGTAGAATGTATGCATTTGAACACAGCCATCTGTGTTTTCCTCATTATTATAGCAATATGCACTGAGACAGAATCTCTTCTCTTGAGCATACACCACGTACTGTAGGTTACGACCTACAACTTGTTTCAGAATGTGTTCTCGTACTTTAGGACGTGGTGCTGTGCTGAATGTATTCCTTATTGTGCTCACTgcaaccaacccccccccccccccacatatcAGAGACAACACTGGCCCTACTCGTGCATCCAACCGTTGTGTATGTTAAtactgtattcagcattttactcATACTCGCTGCTCATTCATTCTCTCACTGTTCATTTTTGTGTCCAGCACAGTCACACCTTAGATTGTTTGCACTTCTATGTCTTCTTCTCATGACCCTATACAGCCACTCTATCAAAGACAGTTCATCAACCGGTTGTAGTAGAAAATCCAGCTGCAGTGTTGCCTAGAGTTCATTGTATGGTTGTTACATATCGACAAGGTAGTGGATTGCAATGTCGCATATCAAAAACCCTTTACTTTTTTCTCTTGTCTTTTGAATACTTACCCGGGCAGTATTCCATCAAAGCAGGTTTCCTGGAAGAGTCAAGAACATGATTGTGCTTGCATTGCAATAATGCACCTTCGGTTTCATGTACTCCGCAATGCAAATGTTTTCAGAGACTAAAACTGCATATAAACTCAAACATACTTTCTTGCTGCGCAGGATGAATCATGTTTTTAGACCCACAATGGGAAACCAGATAATGGTTTTGATTTACTAGAGCCCTTAGTTGTTTTGGGGAAGATTACAATTCCCCCTCTTAAATCGATCCCTGAAGATCTCCCATCCTTGTCAGACACTACTTGATAAATTGCTTCTGTTACCTATGCAATTCTTCATGGTCTCTTTGCAAGTATTGTTTTTGCCATCTTCCTTCCACACTTTATTATTCAATAAGAATAGAATGAATCCCTCTGTTCCATTCTAAGATTGTCATTACTGGTCCTTGACGGGTCAGTGTAGTAGTTACATTTATTATACAACGGTCTGATTGCTGAGGAGAGGTGGGTGTTCTATGCATTCTAGTTCTATACCGTTTTGTCCTCTACCCGGGTTCCTCCCATCTGGTCAACTCTGGCTGTTTTAGACTGGCAGGGTGCCCGCTCACCTTCTTGCTCTCCATTTACTGTGGAATTGATCGCTATGGAGGACGTCTGTGTTGtcttctctcagctctctcttcatctgtcacTTCCTCTCCACCACTATTTCTTGAGGTTGTGAAAGGTAGTGGTTTACCTTTTGTCACAAAACGCCTTCCTACTGTGAGCATGTGCACTAAAAGTTGACATTTGGTCTGTACAATACATGTATTTTCTTTTATTTCATTTAACTAAATGTTCAATGATACTTCACCTGTTTTTACTTGATTTTTCTTTGCCTTTTTTGCAAACAAGTTTGTTCCCATTCTGTAGTTTATTACATACAGTTTCCCTGAAGGGATTATTTAAAGTTGACTTTTGTAATGTATGTTTGCATAGTTCAATAAACTATACATTTTCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468357 lncRNA downstream 33375 52005480 ~ 52007033 (-) True G413112
TU468342 lncRNA downstream 43467 51996731 ~ 51996941 (-) True G413097
TU468284 lncRNA downstream 126266 51906856 ~ 51914142 (-) False G413040
TU468285 lncRNA downstream 126266 51906856 ~ 51914142 (-) True G413040
TU468261 lncRNA downstream 161719 51878287 ~ 51878689 (-) True G413019
TU468861 lncRNA upstream 2393 52102976 ~ 52107539 (-) True LOC110524012
TU468909 lncRNA upstream 8175 52108758 ~ 52109812 (-) True G413623
TU468966 lncRNA upstream 126894 52227477 ~ 52291779 (-) True G413678
TU468978 lncRNA upstream 158739 52259322 ~ 52260026 (-) True G413689
TU469060 lncRNA upstream 297910 52398493 ~ 52398805 (-) True G413745
XM_036979048.1 mRNA downstream 272297 51633297 ~ 51768111 (-) True LOC110522962
XM_021603269.2 mRNA downstream 657657 51296717 ~ 51382751 (-) True LOC110524005
XM_021603271.2 mRNA downstream 657888 51296717 ~ 51382520 (-) False LOC110524005
XM_021603270.2 mRNA downstream 658260 51296717 ~ 51382148 (-) False LOC110524005
XM_036977760.1 mRNA downstream 814591 51222516 ~ 51225817 (-) False LOC110524003
LOC110524012 mRNA upstream 1665 52102248 ~ 52107624 (-) False LOC110524012
XM_021603290.2 mRNA upstream 31419 52132002 ~ 52146396 (-) False actl6a
XM_021603291.2 mRNA upstream 31419 52132002 ~ 52146396 (-) True actl6a
XM_036977777.1 mRNA upstream 71471 52172054 ~ 52198556 (-) False LOC110524016
XM_021603293.2 mRNA upstream 71471 52172054 ~ 52199828 (-) False LOC110524016
TU467825 other downstream 427846 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 663278 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 855633 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 1316331 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 1317347 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 1517100 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 1517155 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 1790177 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 1903148 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 2262703 54363286 ~ 54386228 (-) False G416110

Expression Profile