RNA id: XM_036977774.1


Basic Information

Item Value
RNA id XM_036977774.1
length 2566
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110524014
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52147164 ~ 52168561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTCATGCATCAGCTCTCTCTTACATTACTGCTCTTCCTTGCAACATCCACAGTCACTGAGCATAGAGGAAGAACTGAAACCACACACCGTCTGTCTGCTTACAGTCCATGTACTTAAGGACGTATGTGGAAAACGCCTACTTCCTCTCCCACTTATCTGCACTGAAAAAAAGgTGTCAGCTGGTCTGTGTGATTTTTACAAACCCAGTTTTCCAAGTGGAGCGTGGCCTGAACACATCACAGAGGGACAATGAGCGAGCTGGAACAGTTACGGCAGGAAGCGGAGCAACTACGCAATCAAATCCGGGATGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCGCAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGAACGCGACGCACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGTGCCTCCCAGGATGGCAAATTGATCATTTGGGACAGCTACACAACAAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCATACGCGCCCTCTGGGAACTATGTGGCGTGCGGAGGCCTGGACAACATCTGCTCCATCTACAGCCTGAAGACCCGTGAGGGCAACGTGCGTGTCACCCGCGAGCTGCCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGACGACAACCAGATTGTGACTAGTTCCGGGGACACCACCTGCGCTTTGTGGGACATCGAGACTGGCCAGATGGCCACCAGTTTCACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTCAGCCCTGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCGTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGTCACGTGTCCGACATCAACGCCGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGTCGACTGTTCGACCTGCGTGCTGACCAAGAGCTAATGATGTACTCGCACGACAACATCATCTGCGGCATCACCTCGGTGGCCTTCTCCAAGAGTGGCCGCCTGCTGCTGGCTGGCTACGACGACTTCAACTGCAATGTGTGGGACACCCTCAAGGCCGAGCGTGCAGgtGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGATGGCATGGCCGTAGCTACGGGCTCATGGGACAGTTTCCTCCGAATCTGGAACTAAACCCTCCAcatcacctccacctcctcctctatccccccctccaccaacccacccacccacaccacaGGGCTGGACTTGAGGGTGAACACTGTGtcttctcccctccccaccaacccaccaccaACTCCACAACACAGGCAAAGTCCCCCCTGTCCAACTCATCCCCTCACCCAACCACCCTCCAAGCCACAGCCAGCGCCGCTGTGGGAAAGTAACAACTCTTTCTACCTTTCCAAGTGACGTTTTTTTACCCACCTATTACACAGAGGTTTTCAAGTACGTACAGTTAgtccaataaaaaataaatgatgaGACGagattttaaaacatttgcaaaaaaaaaaaaaaaaaaaaacctggcaTCCCCTCTTCTTTTCAGACAGGGGGAATAGAGCGCATGTTACCATGGTTACCGCCAAATTAGAGGACAGTCTGtgtatgtaaatgtatatataaatacagtatatatgtatagcattatgtgtgtatatatgcatCATATATCCAcatataatgtgtatgtatatactttTGTAGTTTATTTCCCACCCttgagttttttttgttttgtttagttttttttgccTTATGTTTTACTTGTTTAATGTATATAATATTCACAGTACTACACGATAACACAATTCCGATTTTGTCACTTGCCCCATGTACAACATAATGTACatgtcagtatgcatgtgtgtgtgagtgtgtgtatgtgcgtgtgatGGTCTACCGGCAAAGGTATACACACGTTCTATaactataatactgtatattcatatgttgatgattgCGGTAACGATAGGAGTTGTGATCTGTTGGCATTCCTCTAAACAAACATGGCTTTCTTTTCTAAACAGAGCCGTTGTGGTCGTTTGTAGAGACAGCTTCTAGACTACAAAGGTTAGGTTTTAGTCTTGGCGGCGTTTTAGCCCAATCCCTTTTCTAGAAACTGGTTTAACTAGGTATTGATACACAGCTCCCGTAGTTGTTTGGAGGCGCAGTCTCGCTAAGCCCCTCTAACAAACTCAAACAGCGTGAAACGACAGCCTAGAGAGACTCGCAGGGGTCTCGGGCTGTGTTCAAAACCGCTGTTGTATGGCGAATAGTATAACATCACTCCCACGCCTTGCAAATCAACAACAGTGTGATATGGAATAAATATGTTGCGATCATTCACTAATAGAGACTTTACTGCATATACCCCAAAGCCTTTACGTCTCCACTGCGGATGGAGACGGGGGCCGGTCTGAAACCTAGGACCAAAAGGTCTGAAACGTAGGGCCCCAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468456 lncRNA upstream 9171 52136525 ~ 52137993 (+) True G413206
TU468452 lncRNA upstream 13318 52132019 ~ 52133846 (+) True G413202
TU468411 lncRNA upstream 27714 52076296 ~ 52119450 (+) True G413163
TU468372 lncRNA upstream 66130 52021206 ~ 52081034 (+) True G413126
TU468185 lncRNA upstream 233237 51907208 ~ 51913927 (+) True G412944
TU468613 lncRNA downstream 208125 52376686 ~ 52377088 (+) True G413342
TU468630 lncRNA downstream 233636 52402197 ~ 52402404 (+) True G413358
TU468651 lncRNA downstream 270229 52438790 ~ 52439079 (+) True G413377
TU469236 lncRNA downstream 534915 52703476 ~ 52703698 (+) True G413919
TU469276 lncRNA downstream 562594 52731155 ~ 52731519 (+) True G413959
XM_021603289.2 mRNA upstream 37447 52107002 ~ 52109717 (+) False LOC110524011
XM_021603287.2 mRNA upstream 37447 52107726 ~ 52109717 (+) True LOC110524011
XM_021603288.2 mRNA upstream 37456 52106568 ~ 52109708 (+) False LOC110524011
XM_021603286.2 mRNA upstream 37456 52107726 ~ 52109708 (+) False LOC110524011
XM_036979049.1 mRNA upstream 115337 52013567 ~ 52031827 (+) True LOC110524010
XM_036977780.1 mRNA downstream 54267 52222828 ~ 52230021 (+) False plaat1
XM_036977779.1 mRNA downstream 54268 52222829 ~ 52230021 (+) False plaat1
XM_021603300.2 mRNA downstream 54269 52222830 ~ 52230021 (+) True plaat1
XM_021603299.2 mRNA downstream 61534 52230095 ~ 52235296 (+) False LOC110524017
XM_021603298.2 mRNA downstream 61537 52230098 ~ 52235296 (+) False LOC110524017
TU468094 other upstream 344344 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 1008780 51130364 ~ 51138384 (+) False camsap2a
TU466916 other upstream 1008780 51130364 ~ 51138384 (+) True camsap2a
TU466639 other upstream 1483524 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 2223566 49889400 ~ 49923598 (+) True LOC110523996
TU469325 other downstream 592828 52761389 ~ 52761729 (+) True G414007
TU469359 other downstream 609956 52778517 ~ 52779479 (+) True G414041
TU469816 other downstream 943622 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 2009368 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 2160634 54329195 ~ 54329780 (+) True G415808

Expression Profile