RNA id: XM_021603294.2


Basic Information

Item Value
RNA id XM_021603294.2
length 3256
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110524016
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52172054 ~ 52199848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCCGCCCCTTTGCCCTGGCTGCGAGGAGCTACTGCTGACTGAGACACGAATAACAGATGAAAGGTTAGCTGGCGACCTTAGTAACTTTACCAAATATTGACCATTCATTTTCGGCAAAAGGATTTACCCCTGTCTGTGGTATGAAAAGGTAACTTTGGTCATCTCGCCTGAAGTTGTGAAAGCTGAAGCATGGATTCAGCTCAGGGGAATTTCTCTCCACTAAAACGCTTTGTAGTGGCCAAAAAGAAGATCGGTGATGTGTTTGAGCAACTGCTGGAGTATGTGAAGGAAGGCTCAGCATTTGTAGaagAAACGTGTCAGAATGAAGCCTTGGAGAACATTGCAAGTCGTGACCAACAGGAGGAGATTCAGGCGTATGCTGGCAAACTGCAAACTATCAAAGATGTGCTTGCACGCAGACACATGAAGGTGGCCTTCTTTGGCAGGACGAGTAATGGGAAGAGTACAGTGGTCAATGCCATGCTGAGGGACCGGGTGCTGCCCAGTGGCATGGGTCACACCACCAACTGCTTCCTGAGTGTGGAGGGCACGGACGCGGACCACGCCTACCTCAAGACCGAGGGCTCCGAGGAGGAGAAGAGCATCAAGACTGTGAACCAGCTGGGTCACGCTCTGCACATGGACGAGAGTCTGGACGCAGGCTGCCTGGTCCGAGTATTTTGGCCCAAGACCAAGTGTGCCCTGCTCAGAGACGATCTGGTTCTCGTAGACAGCCCTGGGACAGATGTCACGACACAGCTGGACAGCTGGATCGACAATTTCTGCCTGGACGCCGATGTCTTCGTGCTGGTGGCAAACTCAGAATCAACCCTCATGAACACGGAGAAGCATTTCTTCCACAAGGTGAACGAGAAACTCTCCAAACCTAACATCTTCATCCTCAACAACCGCTGGGATGCCTCGGCCAGCGAGCCAGAGTACATGGAGGATGTGCGTAAGCAGCACACGGACCGCTGTGTCAACTTCCTGGTGGATGAGCTGAAGGTAATGGACCGGGAGCAGGCGCCCAACCGCATCTTTTTTGTGTCGGCCAAAGAGGTGCTCAACTCCCGCATGCAGCGAGCTCAGGGTATGCCAGAGTCCGGTGGAGCTTTAGCAGAAGGCTTCCATGAGAGGCTCAAGGAGTTCCAGAGTTTCGAGAGGATATTTGAGGAGTGTATCTCGCAGTCAGCAGTGAAAACAAAGTTTGAGCAGCACACTATAAGGGCCAAGCAGATCACTGAAACGGTCAAAGCCATCATGGATGCCATCAACATCGAGGCGGCAGAGAAGAGAGTGGCCTCATTGGAGGACCGTGAATACCAGATGGATCGTCTGGAGTTTGTGAAGAACCAGCTCAGCCTGCTCATAGAGGACATCAAGATGAAGATCAAGGCCATTACAGAAGAGGTGGAGAGCAAGGTGTCTAGCGCCATGGGCGAAGAGATCTGTCGTCTCAACGTGCTAATTGAGGAGTTCCACTCGGACTTCCAACCTTCGCCCCACGTCCTCAAGCTCTACAAATCAGATCTACTGAGCCATATTGAAGAGGGCATGGGCAAAAACCTGGCCTTCCGCTGCTCCAATGCCGTCAACGCCTCCCTGCAGTCCTCCCAGAAAGACATGATCGAGAGTCTGCAGCCTCTGCTGCCCCCTGCTGTTCAGAGCCAGATACAAACTCTTGTGCCAAGCCGCAAATTTGACCTGAGCTACAACCTGAACTGCGCCACGCTCTGCTCAGACTTCCAGGAGAACATTGAGTTCCAGTTCTCAATGGGCTGGACGGCACTGGTCAACCGCTTCCTGGGGCCTACCAATGCAAAGCGGGCCCTCATGCTGGTCGACAGGAACTTTCAAGTAACGCAGATGACACACTCCCTGTCCACCACGCCCTCCAGTGGCCCCTCCTGTGTGGCGGTAGCACATCCCCAGGACGCCGCGCTCTCCCATGAGGAGCTGATGATGTCCATGGCCACCAACCTGGCCTCCCTCACCTCCCGCACCTCCATGACTGTGGTCATCGTTGGAGGAGTGGTGTGCCGGACAGTGGGCTGGCGGCTCATAGCCCTGTCGGCCTCCATGTACGGCCTGCTCTACCTGTGGGAGAAGCTCACATGGACTACCAAGGCCAAGGAGCATGCGCTCAAGCGCCAGTTTGTGGACTACGCCACAGAGAAACTACAACTCATTGTCCGCTTCACCAGTGCCAACTGCAGCCACCAGGTCCAGCAGGAGATGGCCACGACCTTTGCGAGGTTGTGTCAGCAGGTGGACCTGACACagagggagctggagggagagatcAGCCGACTGACCGCTAAGGTCCAGACTCTGGAGACCGTCCAGAGCCACTCCAAGACCCTCCGGCACAAAGCCACAGAGTTTGAGAGGCAATTGGAGGCTTTTACAGACCAGTATCTGAATCCCCATAAATGATGGACTgggtttctctctctggctctactGGCTCCCCTAGCGACTCAGTCTTAGCAAATGGAATTGACTCTCCCCCCctgacctcccctctccactcagaGAAAATAGGTCCACCCTCGACAATATTGCTCCTGGGATTCCCCCACCTCCGAACAGATGTTTCTCTAAGATATTTGTCGAAGTGTGTCCAGTCTTCCACACACTTTAGAAAAGCACTTTGCAGAGAACAAACTGCCCATTAGTTCAACAAACCAAACTGCCTGTAACACAAATACAAACTCTGTGTAAGTGTGTGAATCAGTCGTGTGAATACAGTTCCGAAGGTCAGGACATAAACTCGGTTGGCATGAGATTGAAGGTTGGGTgctgtagcctgtacattgataCTACTGTTCTTATAACTGTGAATATGCCTTTCACTAACTCCTGAAGtaattatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtagaaaaATGTAGGCATGTGATTTTCATTCAGATCTGAATTTGTTCTGGTTTACACAAAAAAAATagaattgtgtgtgtttttttgtgaaggaCCTACATAAATTCAGAggaaatccatttgaattcagaaAAAAACAATCAAAATTACTAACGTCCGGCTGATAGTGTTTTGATAAATAGAAGTATTGTATAACTTCCTCTGCCGTTTCAACTAATTTGACATGTCATGAGAATACATTTGAACAATCTCCACTTTGTAAAAAAGTGTTTTCCTTTCATGATGAATTTGAATTGAAATGCATCCTGATTTACCTGAATCTATTAAAATAATATTCTATGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468909 lncRNA downstream 62242 52108758 ~ 52109812 (-) True G413623
TU468861 lncRNA downstream 64515 52102976 ~ 52107539 (-) True LOC110524012
TU468357 lncRNA downstream 165021 52005480 ~ 52007033 (-) True G413112
TU468342 lncRNA downstream 175113 51996731 ~ 51996941 (-) True G413097
TU468285 lncRNA downstream 257912 51906856 ~ 51914142 (-) True G413040
TU468966 lncRNA upstream 27649 52227477 ~ 52291779 (-) True G413678
TU468978 lncRNA upstream 59494 52259322 ~ 52260026 (-) True G413689
TU469060 lncRNA upstream 198665 52398493 ~ 52398805 (-) True G413745
TU469093 lncRNA upstream 284886 52484714 ~ 52485149 (-) True G413777
TU469217 lncRNA upstream 491991 52691819 ~ 52692025 (-) True G413900
XM_021603290.2 mRNA downstream 25658 52132002 ~ 52146396 (-) False actl6a
XM_021603291.2 mRNA downstream 25658 52132002 ~ 52146396 (-) True actl6a
LOC110524012 mRNA downstream 64430 52102248 ~ 52107624 (-) False LOC110524012
XM_036977769.1 mRNA downstream 70105 52040408 ~ 52101949 (-) True LOC110522967
XM_036977768.1 mRNA downstream 71443 52040408 ~ 52100611 (-) False LOC110522967
XM_021603304.2 mRNA upstream 64693 52264521 ~ 52275343 (-) False LOC110524019
XM_021603303.2 mRNA upstream 64693 52264521 ~ 52280858 (-) False LOC110524019
XM_021603302.2 mRNA upstream 64693 52264521 ~ 52286710 (-) True LOC110524019
XM_021603305.2 mRNA upstream 151982 52351810 ~ 52373401 (-) False LOC110524020
XM_021603306.2 mRNA upstream 156538 52356366 ~ 52373401 (-) True LOC110524020
TU467825 other downstream 559492 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 794924 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 987279 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 1447977 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 1448993 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 1417855 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 1417910 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 1690932 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 1803903 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 2163458 54363286 ~ 54386228 (-) False G416110

Expression Profile