RNA id: XM_036977779.1


Basic Information

Item Value
RNA id XM_036977779.1
length 1633
RNA type mRNA
GC content 0.42
exon number 6
gene id plaat1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52222828 ~ 52230021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTGTGGCAGTAACCCGGTGACTGTCATCATCTGTCAAAGTCGATACCATACCACGACGTATGCACATGAAACACTACCTACCTGCAGGACCTCAAGCACCGCTTCAATTTTCACCAAGCAATCAGAGGGACTCTAATCCGAATAAGTTAGATTTTTCCCTCAGATAACCGACCATCACAAGGACTTGGATTGAATTATTTCCCTCATCTGACTTTCAAAACGTGCGGCTATAAATCATGGAGCACTAAAATGGAGAGGAAGAAAAAGGTGTTAGTGTTCGAATCACCTACCATGATCGAAGAATATTACCACAAAAGAAACATCAAAATTCAAAATTTGTGGAAGCATGATGTGGGATGGATAGAAAAAGTGCAACCTCTACTATGGCCTCTAATGACCCCAACCCTCTTGACCCCCCTGGGACCCCCCAGCCTGGTGACCTCATTGAGATCTTCAGACCGGCCTATCAGcactgggctctgtacctgggagATGGTTATATCATCAACTTGACACCTGTTGACGAGAGTCAGGCTGCAGCCATCTCCAGTGTGAAGTCAGTGTTCAGTCGAAAGGCAGTGGTCCGAATGCAGCTTCTAAAGGAAGTGGTTGGAGATGACTCGTACCGGGTCAACAACAAATACGACGACGACCGCACTCCATTGCCTGTCGATGACATAATTCAGCGATCTCAAGACCTCATTGGCCAGGAGGTGTCTTATGACCTGTTGGGCAGTAACTGCGAGCACTTTGTCACCTTGCTGCGCTACGGGGAGGGGGTATCTGAGCAGGCCACACGGGCCATTGGAGCTATCAGTTTGGTGACGGCTGCAGCAAGTGCCTTCTCTGTTCTTGGACTGATCAACACACGCTCCAGAAACCGACCCTTCTGAAGCCCCTCAACAACAGCAGCACTGTCCTGTGCTACTACTGTTCTGGGAAACAATCTTATTTTGGTTAAGAAGATAAATGGATACTCATCTTTACCCACTGTCATAAAACATGGATGCAATGACCCTTTGTATCATCATTTGTATGAGGCCAAGCAGACAAagtactgtatacagtagagatgttGCCAACATTACAATTAATGCAGTATCTTGCTGGAGATACACATTTGGAGATGTTCAAAGGATTGGTTGTGTGAGAATGAAGTTAGAATGAAATGTAAAATGTAACAAAAGAATAATTAATAAAGAACTGAAGTATCGCATCCATTACGAAAGAAgactgcagttagagtgcagtataactacagtatgttGCAAATACTACGTCCAAAGCAACAgttttttttactgcagtaattttgcaTTGTAACTGCAGTTAGAGGGCAGTATAACTGCAGAATAATAGAGCAGTTGAACTGCAGTTATAATGCAATTACagcatccaaaataccacagtcaactgcagttactgcacgtttactgcagtttcaaaaatCTTTATTCTTTATTATGTTGGGTTTGATTCTTCATATAATTCAATCTTGTCAAGCACAGACAGTTTAAAACATCATCTAAAATTCTAACGATAGAAAAACTGACAAAACGAATTGAATAATAATCAAAAAACAATGTAACGTGAATGTACTTTACATATACAAATTAAAGGCCTACTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468456 lncRNA upstream 84836 52136525 ~ 52137993 (+) True G413206
TU468452 lncRNA upstream 88983 52132019 ~ 52133846 (+) True G413202
TU468411 lncRNA upstream 103379 52076296 ~ 52119450 (+) True G413163
TU468372 lncRNA upstream 141795 52021206 ~ 52081034 (+) True G413126
TU468185 lncRNA upstream 308902 51907208 ~ 51913927 (+) True G412944
TU468613 lncRNA downstream 146665 52376686 ~ 52377088 (+) True G413342
TU468630 lncRNA downstream 172176 52402197 ~ 52402404 (+) True G413358
TU468651 lncRNA downstream 208769 52438790 ~ 52439079 (+) True G413377
TU469236 lncRNA downstream 473455 52703476 ~ 52703698 (+) True G413919
TU469276 lncRNA downstream 501134 52731155 ~ 52731519 (+) True G413959
XM_036977773.1 mRNA upstream 54268 52147164 ~ 52168561 (+) False LOC110524014
XM_036977774.1 mRNA upstream 54268 52147164 ~ 52168561 (+) False LOC110524014
XM_036977772.1 mRNA upstream 54268 52152268 ~ 52168561 (+) True LOC110524014
XM_021603287.2 mRNA upstream 113112 52107726 ~ 52109717 (+) True LOC110524011
XM_021603286.2 mRNA upstream 113121 52107726 ~ 52109708 (+) False LOC110524011
XM_021603299.2 mRNA downstream 74 52230095 ~ 52235296 (+) False LOC110524017
XM_021603298.2 mRNA downstream 77 52230098 ~ 52235296 (+) False LOC110524017
XM_036977778.1 mRNA downstream 3497 52233518 ~ 52235296 (+) True LOC110524017
XR_005051758.1 mRNA downstream 16752 52246773 ~ 52248895 (+) True LOC118964618
XM_021603301.2 mRNA downstream 24692 52254713 ~ 52263056 (+) True LOC110524018
TU468094 other upstream 420009 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 1084445 51130364 ~ 51138384 (+) False camsap2a
TU466916 other upstream 1084445 51130364 ~ 51138384 (+) True camsap2a
TU466639 other upstream 1559189 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 2299231 49889400 ~ 49923598 (+) True LOC110523996
TU469325 other downstream 531368 52761389 ~ 52761729 (+) True G414007
TU469359 other downstream 548496 52778517 ~ 52779479 (+) True G414041
TU469816 other downstream 882162 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 1947908 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 2099174 54329195 ~ 54329780 (+) True G415808

Expression Profile