RNA id: XM_021603304.2


Basic Information

Item Value
RNA id XM_021603304.2
length 3404
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110524019
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52264521 ~ 52286710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAATCAGCTTTCACTGGAAGGATGTGGCTGAGCTGAACTAGTTCAGAAGTCACTCGGCACCCATCATTATGCAGTAGCAAGTTCAGACTTGAAGGCCTTTGTTCAACTGTTTTCGGGTTGGGTTTTGTTTTGACTGGCTGCAAATTATGGATTGAAATCAGTGCTGCTACAGTGTGTTTTTATTCAGATAAGGAGGTCTTGCTATAAACAGGTATGAGTTTTCGGTCATCAAGGAGACTGCATCTGAACGGcTACCCGGTGGAGAGTGGGGGACTATTGGTGAAGAAGGTGAGCAAGAAGGTGAAGACCAGGAAAGCCTTCAGTCTGGAGGAGGCCCAACTGGAGCTCCAGCAGAACAGAAACTTCACCAGACAAGCCCCCGTCAGGTCTCAGACGTTCGACGCGGATAGAAGTTTTGAGAAGACTGAAGGCAGTGGTTCACAAAGTAGTTTTATAAAGCACAACAAAACATTCCACAAGCTGTTTCCTGACATTCCGGAGAGTGAAGACGTGCTACATGCCTACATCTGTGCCCTGCAGAAGGAGGTGCCCTACCACGGCAGGCTCTATGTCACCGAGCACCACGCGTGCTTCCACTCTTCCGTGCTGCTCAAGGACACCAAGTTGGTTATCCCGGTGACCAGCGTGCACATTGTGAAGAAGCAGAACACCGCCCTGCTGGTGCCCAACGCCCTGTCTATCCGCACCATCGAGGGGGAAAAGTACCTGTTTGTGTCTTTGCGGAACCGAGAGGCATGCTACAAGCTCCTGCGGTCCGTTTGTTCTCGACTGGAGGATGGAAGTGCCAACAGCAGCCCCTTATTATCTTCTACGGACAATAGCTTTGATCAGGGCAAGCTAGTGAACTCCAGTCAGTCCAGTCTAGACCAGCTGGACAGGTCAGACCCCAAGCTATTCCTTGACTCGCCCCCACCCAACCCACACACAGACCTAGTGCCTCAAGGGAGCAGCTCCAGCCGTAGGAGCACGCACACGCAGCAGAGTGACGGCTCCTTAGAGAACGTCTCAGGTGGCTCGTGGGTGTGGAGTGTGACGGAGAAAGCCCGCTCCCTTCTCATCCACAGAGAGACCAGCAGCCTCAACACGCTCCTCTTCATCTACCTAATACTGGTGGTACTACTGCTGCTATCATCCGGGTACATCGGCCTCCGTATCGTGGCTCTGGAGGAGCAGTTGACCTCTCTGGGCGCCCTCCCTGAATTCTCCCTACAGAGCAGgTACAAAGACACAACCATGATTGGCCAGAGGAGAGATTGACTCATGTTTGGAGGACGTGACAATATAGCGCCAACTGGAGCTCTCGTGTTGAAGATATTCTGTCCTATAAGAACTAGGAGCAATTTTGAAAGTGTTCCAGAGTTGGCCCGTTGTCCTCTTGCATATAGGACTTTTGGAGCACCTCCCTGTATGAGTTCAAACACAGACGGGTAAACTCAAAGGGCTATATTTAAGAGAGCTAACCCAGGCCAGCCACAACTCGCAGCAAGCGGAGCCAAGCCAACACATATGCACACAAATGAGCTGCTGTGTGACTTGGAACCAAAGCCAACTCTCAAACTAAGAATAAACTGAAGGAAGGCGGTAGTCAACTCCATCTGCTCTCAGATCATATTGACGAAGCGATTTCTCTGATTTCTAAGAGAACTCTGAAACGTGTGTGTGCGCTTCCAGTTTGTATTCTCTTCATGAGCATGTGGTCTGTGCAGACTAGTCAAATTGAGTGTAGTCCTACGTTTTGCTGCttctttttattttaatttttttaacacCTACCGTAAGGTACAAGTGCTATGCAGAACCAAAGATGCACGTCTTTGGCATGAGTACACAGATACATTTTATTCTTTACCTCCTATCTCAGCATTTCATCACGGTGTTAAGTCTATCTGTATTTAATCTTTCACTACTAAGCCATCTGAGGGTTCTCTTGAATGATTCTCCTGGTAATCAGCCATAATGATAACAATGAATTATCTTGTCTTCCACGGATCAGCCAGCCAAGCAGCCATTTTGAGCTTATCTCCTGAAGGTCTCCTCTCTTTTAAAGATCAGCAGTATTTAGCCTGGCATTCGCATGATTTAAACCAGTTTTAATGATTAATGCTTTTGGAGGCCACTCCCTCCAGTCTCACTGGATGTATGCATCTTCAATGCACAAAAAAAAGTACGATCAGGTTGAGTGTTGTCGCATTTGTAGCCGTAGAAATGttaaactttttttattttattattactttGATCATCAAAGTAGTTTTTGATATACCAATACTATTCTTGTTCAGATTAATATCTGATGACTTCTGTACTGTATAGAATGAACTGATGTTGTGTAAAAGCAAAGAATCAAACCTCTGTTCTCAACAGGCCTGTCAATGACTAAACGCTTGTTCCTACCGGTTCGGCTGTTTCAGGACTGTTCAATGGCTATTTAGATTAAGAAGCGCCATAATGTATTGTATATTATTGCATGTGTCTGGAGCATCAGATACTTGACTGATATATTATGCACACTTTAATCAAGCGATGTTACGGAGGTCCTATTTCCAACGAAGGAAATAAATGTGGTCGAGAGAATTTATTTCAATATGCAAAAAAACATGCAGGCAAAAAGATGTATTGGCAAACCTGtagtttttttaattttattatttgttttaaaaaataaagcaaaAAGAATGGCTCGTGAGCGATCAAGCGCACTTTAAAAGTTGGGAACCTGTCAATCCAAAGACATCACATTTGACAGATGGTGGGGAAGCAGGTGTTTGTTCTTTAGTATTTTATGGCGCTAAGGCCTTTTGTTCTTCTCAGGGATGAGGGCAACCTGCCACAGTTTCAGGTTCCCTGCTTTTCTTTCGCCATTTACTTTGTCCATCGGAGCGATAATGTTCTCTACTTTTCATTGAGCATCACTTTGTAACTTTGCGATATGTCAGTCTCTGATTTGTTTGAACTTATCTCGTGACATGGGATGATTTGGTCGAAAAacatgagaaagaaaatccattAAATTGTAACACTTTCTCTATTGACGAGACATTAAATGCGTTGAAGTGACGTCTTATGTCCTAATGATTGGGTAGTTGTAGTCAGGTGTTGGGCTCAACTACATGCCATAAAGCAGTACTGTCAGTTCCTGTACTTCCCCACCTTGAGACAGCACACTTCTTCAAACGGATACAATGCAAGAATCTCAAGAAGAGTGCAGTATGTGTGGTTTTGCACTATTGAAGTGGTGTAAATTATTGTAATGTCCTTAATTCTATGGTCATATGTATTTATTTGCATTCTGTGTAATTCAAAGTATTTGTCTCCGTGAGATTTTGTTTTGGTATTGTTaaacaaataaatcaaatgttgCACAGAGTATACATGCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468978 lncRNA downstream 4495 52259322 ~ 52260026 (-) True G413689
TU468909 lncRNA downstream 154709 52108758 ~ 52109812 (-) True G413623
TU468861 lncRNA downstream 156982 52102976 ~ 52107539 (-) True LOC110524012
TU468357 lncRNA downstream 257488 52005480 ~ 52007033 (-) True G413112
TU468342 lncRNA downstream 267580 51996731 ~ 51996941 (-) True G413097
TU469060 lncRNA upstream 123150 52398493 ~ 52398805 (-) True G413745
TU469093 lncRNA upstream 209371 52484714 ~ 52485149 (-) True G413777
TU469217 lncRNA upstream 416476 52691819 ~ 52692025 (-) True G413900
TU469300 lncRNA upstream 469203 52744546 ~ 52744788 (-) True G413983
TU469302 lncRNA upstream 470924 52746267 ~ 52746514 (-) True G413985
XM_021603296.2 mRNA downstream 64673 52172054 ~ 52199848 (-) True LOC110524016
XM_021603295.2 mRNA downstream 64692 52172054 ~ 52199829 (-) False LOC110524016
XM_021603293.2 mRNA downstream 64693 52172054 ~ 52199828 (-) False LOC110524016
XM_021603294.2 mRNA downstream 64693 52172054 ~ 52199828 (-) False LOC110524016
XM_036977776.1 mRNA downstream 64693 52172054 ~ 52199828 (-) False LOC110524016
XM_021603305.2 mRNA upstream 76467 52351810 ~ 52373401 (-) False LOC110524020
XM_021603306.2 mRNA upstream 81023 52356366 ~ 52373401 (-) True LOC110524020
XM_036977808.1 mRNA upstream 129384 52404727 ~ 52619186 (-) False ptprsa
XM_036977805.1 mRNA upstream 129384 52404727 ~ 52619187 (-) False ptprsa
XM_036977807.1 mRNA upstream 129384 52404727 ~ 52619187 (-) False ptprsa
TU467825 other downstream 651959 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 887391 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 1079746 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 1540444 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 1541460 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 1342340 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 1342395 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 1615417 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 1728388 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 2087943 54363286 ~ 54386228 (-) False G416110

Expression Profile