RNA id: XM_021603306.2


Basic Information

Item Value
RNA id XM_021603306.2
length 4299
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110524020
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52351810 ~ 52373401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGGGAAAAGGAACATTCAGAAAAATAGATATTGGTGACTGTAaagtagtttattttttatttttgttggggAGGTGTTAGGTAGTTTAGAGAGCACACTATCTCACTACCACTTCAAAATCAGTAGGCTAGTTATTGGTTTCATaactgtttgtgagtgtgtgcatctgttttataaccaaaatatTTCACACTTGTTGTGATACTCATGGTCATCAGTGACCAATGTGTGGGAAGTTGTTTTGACTTGGGCCTCTATGGAGCTATGGTCTAATGGAGTGTAAAGCAAAAAGCACTTAGGACTTTTTTCTGAAAATCACTTTCCGTGAGTCACATTTCACAGCTGTAAACACATAATTATATTCTCACTTTATCTCCAAGACCTTTCAACGATTCAATCATCGATTTTGCATCTCTCACTGCTGTCTACTTTAAAACTTTGCCCTGAGAATATTTGGATGTTTGCCAGAGCCAATCCTATTTTCTTCCGGGAACTTTAGAGGCATTTTGCATGGTTCTATCAATTATGTATGTTTTCATATACAGGTGTCTCTCGTGAGGTCCGTTACCTAACGTAGGCCTACGACTATTATGACATCATAGCCCTATTTGGATGGGTGTTACTAGAGACGTTGGATTTGTAATTATTATCCAAGGATATGCGTTATTCCAGAGGACGATTCACACAAAATGAGTTCGTTTTTCCAAACTATCTTTTTGTTCAGTGCATTTAAATTGAAGTGTGATCATACTAATTATTTTAGTGATCCATCCATGGCAGAGCTACCATTCGTTAGGttctccaaccctaatctagggCATCTGATTAATTAATTAGCTGGatgataaactgaatcaggttagttaaaAGTGGGGTTGGAGCAAAACCTATAGGAAGGTAGCTATCCAGGAACAGAATTGGAGAGCCCTCACCTATGCCATAAAACAGGGTTGAATTAAATAGCCTAAACTatagaaaacacattttattgCAAATTTAGGCCTAATTAAACTGATACATTTGGCGATGTTCAACTTAAATTCACTGGCACAACGAATAATACCTTAACCGTACACCATAGTGATTGCCTCGTAAATTGACCAAAAGTATATTTTAGGCTTTGTTAGATACAGATTACCAAAATATAGCCTATGTGAACGGCACTGACTGTCTATCTGCCTGCCctgatcctctctctccctcgcctgcTCCTCTTCGCTAGTGTTTGGTCTTCGGTCTGTTGGGTGTAGAATAGCTCAGCCCACTCATTGATTGTCCCTACATTGCAAGACAAGAAATTCCTATAGCCTACATTTTATGATTACCTCATGCACGGTTCCGACTGTCTGCATCTATATCTATCGCTAGCTCGCTCTTTGCTGTGagagttttgtttttgaaatataCAAGGGAAATAGTTTCCTCCGTTGCAAAAAATACTGAATCTTAGGAGTCGAGGAGTAAATTCCGAATCTTGACACCCAGAAATGCGAGTCGGCGGGCAAGGACTCGAGGAATCGATTAGATGAGGTGCCGTCAACTTCGCCTGATGACTTGTGTTTGACAGCGACGCTCTGCTGTGGAAAGGGTGAAGAAAAAAGACTATGGAAATCTTCAAAATGGACTAGTTCCTCCTTCTCTTCTGAAGTGCGTTGGGAATAGCCAAACCTCCTCCAGCCACCATGAACCACTCTAACGAGTCGACCCCACTGTGCTTTTCCATCAACAGTCCCCCCTTCAACTACACCCACACCATTGCTTCCGCCTACTTCTCATCAGTGTTTAGTGCACTGGGCCTCACCTTCAACCTCATCGCCTTCGTGGTCCTCCTGAAGTCCTTCCTACGCACGCAAAGCCGGTCGCGCTCCtccttcctcatcttcctctgcGGCCTGGTGTTTACCGACTTCATGGGCCTCCTGGTCACCGGCTCCATCGTGGTCTCCTTCCACTTCACCCAGTTCAACTGGCGCCTCCTGGACCCGCACTGCCACTTCTGCAACTTCATGGGCATGTCTATGGTCTTCTACGGCCTGTGCCCGCTTCTGCTGGGAGCCACCATGGCCATGGAGCGTTTCGTGGGCATCAATCGGCCGTTCGCCCGCTCGACCAGCATGATGACCAAGTCGCGGGCAGTGTCCATAGTGCTGCTGGTATGGGCAGGGGCGGGGTGCATCTCACTGCTGCCCCTGGTTGGTGTTGGGAGCTACCACATGCAGATACCGGGCTCCTGGTGCTTCTTTAAAATTAGCTCAGAGGCAAGCGACATGGCCTTTTGCCTGCTTTTCTCACTGGTAGGGCTGCTGTCCATCGCCGTGTCCTTCTTGCTCAATACAATAAGCGTGGTGACCCTGGTCAAGGTGTGCTGCAGCCAGGACGCTAGGCAGCGGCGCCGCGACTACGAGGTGGAGATGATGGTGCAGCTCATCTGGATCATGATGATCGCTTCCATCTGCTGGTGCCCCCTGCTGAATATTGCCTCACAGAATGGAAACGGCAGCCAACCGAGACGTCTCCCAGATGGTCGGCGAACAGGGATACCTACTTCGTCAACACCACGATCAGCTGGCGCACCTGGGAACGGAGTTCTTCAACGTCTAGATTCTTCCCCAAGGGAGTCACCCCCAATGAGCGGAGGATCCTCTACCATGAGTTGACCCAGCGAACCAGCACCCCAGCCCATTCAGCAGTCTGCCCTGGTCAGCCATGTCCGTTTGTCCCTTCCAGACAAATATGATGGGACTCCATCCAAATGCTGTGCCTTCCTCCCCCAGTGCCCCCTCTATTTTGCTCATCAAACGGGAGCTCCCAACACTGAGCGCCTACTCCAACCACGACTGGAGGACCAGACTGCTGCGGAGTACGCCCTCACCTTTCATACTGTGGCAGCATCCAGTGGATGGAATATGCTGGTGCTCCGCACCTTATTCACAAAAGGTTTGAGTGAGGAGGTCCAGACGGAGCTGGCATGCCGAGATGACACTCTCTCATTGGACGCACTCATCGCAACGGCCATCTGTCTGGATAACCTCCTTCGGGAGCGTCAGCACTCCCATCGCTTATCTCCCTCCTTTGTTGACTGATCTGAGTCAGAGCCTGAACCAGTGGAGGTAGGGGCTACGCGTATCTCCACGGCTGAGTGATGCGGTCGGAGACAACTAGGGCTATGTCCCTATTGTGTCCAGGAGGGACAGCTTCAACTGTGTCCACTAAGTTCTAAACCGAGAGTCACTGAAGCAGAGGGACGGTCCAATGATCATCCGTCTCATGGGGTAGATCAGGGTGTGAGTATTCATCTTCACTCTCCAACAAACCTTTCTTAGTACCTATTTCAATAGCTGTCTGTCCCTCGTGTTGTTTCCACAGCTTTATTTGACTCCGGAGCCACGGGAATTTTATTGACCAGGCCCTTGCCTCCTCCCTGAACATCATACTGGCTCTCCTCTCCGTTTTCAGTTCAAGCACTGGATAACCAACTACTGGGATCTGGCACAGTCACACACATCACAGCACTACTCACCATCACCGTGGGAGCCCAGCACCAAGAAAGCATCACCACCTTCATTATCCAGGCACCCGTACACAAAGTCGGCCTCCCGTGGCTAAACGCCacgaccccaccatgtcctggcCGAGGATGGAGATTACGGCCTGGGTACCAAGATGCCGGAAGACCTGCCTTTCCTTACCTTGTGGTTCACGTAGGTTGAGAATCCAGTGGTTTTCCTCCAGGCCGACATCCCAGAGGTTTACCAGGATCTCTGGGAGGTTTTCTCCAAGACTcacgccacctgtctccctcctctttgCCCCTGGGACTGAGCCATCGACCTGCTTACAGAATCTGCGCCTCTGCGCAGCCGCGTCTACCCCGTCGGTGGCTGAAACCAAGCCTTTGAAGGAGCACATCCAGGAGGCTCTCCAACAAGGTTTCATCCGCCCAGCCGACTCCCCTGCACTAGCTGGCTTCTTTTTCGCAGTGGTGTAAAGTCCTTAAgtaaaagtactttaaagtactacttaagtccgTTTTTGGGGGTATTTGACAATGTTTACatcactacatttctaaagaaaataatgaactttaaattttccctgacacccaaaagtagtcgttacattttgaatgcttagcaggttAGGAAATGTGGTCTAATTCACATACTTatgaagagaacatccctggtcatccctacagcctctgatctggcggactcactaaacacatgcttcattcgtaaattatatctgagtgttgaagtgtgccctatctgtaaattaaaaaaactAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468966 lncRNA downstream 64587 52227477 ~ 52291779 (-) True G413678
TU468978 lncRNA downstream 96340 52259322 ~ 52260026 (-) True G413689
TU468909 lncRNA downstream 246554 52108758 ~ 52109812 (-) True G413623
TU468861 lncRNA downstream 248827 52102976 ~ 52107539 (-) True LOC110524012
TU468357 lncRNA downstream 349333 52005480 ~ 52007033 (-) True G413112
TU469060 lncRNA upstream 25092 52398493 ~ 52398805 (-) True G413745
TU469093 lncRNA upstream 111313 52484714 ~ 52485149 (-) True G413777
TU469217 lncRNA upstream 318418 52691819 ~ 52692025 (-) True G413900
TU469300 lncRNA upstream 371145 52744546 ~ 52744788 (-) True G413983
TU469302 lncRNA upstream 372866 52746267 ~ 52746514 (-) True G413985
XM_021603302.2 mRNA downstream 69656 52264521 ~ 52286710 (-) True LOC110524019
XM_021603303.2 mRNA downstream 75508 52264521 ~ 52280858 (-) False LOC110524019
XM_021603304.2 mRNA downstream 81023 52264521 ~ 52275343 (-) False LOC110524019
XM_021603296.2 mRNA downstream 156518 52172054 ~ 52199848 (-) True LOC110524016
XM_021603295.2 mRNA downstream 156537 52172054 ~ 52199829 (-) False LOC110524016
XM_036977808.1 mRNA upstream 31326 52404727 ~ 52619186 (-) False ptprsa
XM_036977805.1 mRNA upstream 31326 52404727 ~ 52619187 (-) False ptprsa
XM_036977807.1 mRNA upstream 31326 52404727 ~ 52619187 (-) False ptprsa
XM_036977803.1 mRNA upstream 31326 52404727 ~ 52619189 (-) False ptprsa
XM_036977804.1 mRNA upstream 31326 52404727 ~ 52619189 (-) False ptprsa
TU467825 other downstream 743804 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 979236 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 1171591 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 1632289 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 1633305 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 1244282 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 1244337 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 1517359 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 1630330 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 1989885 54363286 ~ 54386228 (-) False G416110

Expression Profile