RNA id: XM_021603338.2


Basic Information

Item Value
RNA id XM_021603338.2
length 3173
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC110524041
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53991256 ~ 54005206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTGCATCAAGCGAACAGAAACCACCATGCGTATTTGAGGCGACAGCTGAAGCTAGCGCTGGCGCGCGCGGAATGCGTTAGACGGCAAAAGTAGCGGTAGGCCTACTTTTATGGAAGCTGGTTAAGGATATGTAACCTCACCCATTCGACTTTGAGTCGTCTGACAGTGAACAGGGCGCACACATCTCCGTGCTTTGACAAGTTGGGATTTGTCATCTTGCCATTACTTTTGTTTTAATCCACTATTTGTACAGAAAATTCCTATGATAAAGGAGGATATTACACTGAAACAGGTAACATTTGAAGAGGACCTTGTCAATTTGTCAGAGTGGCGCAGACATGACTGAGGTGGCACAGAATGTTGCGGATGTCGCATACGACATGACTGATGTGGCACACGGCCTGACTGATGTGGCACACGGCCTGAACGATGTGGCACGCGACACGAGTGACGCGGCACCCGATGCGGATGAGAACGCGCATGGCGACGTCGCGACCGAGTGGCGCGGTCTCGGGGCACACAAAGAGGACGATGCCCCACGTGACAAGCATGACGAGGCACTTAGCGAGAATGAGGAAGAGGTTCACACCGAAGAGGACGAGGTTCACACAGAGCCTGAGGAGGACGAGGAAGATGAGGCACACGACATGAGTGAGGTGGAGCACAGGGAAAATGGCACGGCAAAGGACAAGCCGATGCAAAGGTCAAGATCGAGGAAGGACAAGAAGGATGAGGCACAAAATGGTGTGGCTCACGACATGGACAATGaaaaagaggaagaagagaaagaccAGTTACAGAACATATCTGAAGTGGCTCTGAAACAAGAGAGACTCCTGCGCTTCAAAAAGCCAGTGGCCAGGAGCTACGTGCCCCAGATTGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCAGGAGGAGCACCAGAAGAGGAAGGAGCAGTATGTCAAGGAGAGGGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccAGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGTAGCGTGAAGGGGAAGTTTGCCGAGATGGAGAAgcagagacaggaggaggagaggaagaggatggaggaggagaggaagaagcgcGCCACCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACAGCATCCTGGTCTGTGTGGTGCCATCGAAGCCGTCGCGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAGAAGAACCGTGAGGAAGAGCTGAAGAAGaggactgaggaggagaggaagaagcgcTACGACGAGAACAAGCAGTCCTTCCGCGAGGCCAAGCGGCGCTCGGTTGTACAGgatgaggatgaggagcaACCCACGGAGAAGGAACAGGTGACTCCTGGGAAGCTGAAGATGACGTTTGAGGAGgcggagaaggagaggcaggaaaGGCTGAGGAAGCAGGCTGAGAGGGAAGCTAAACGACGTCTGCAAGAGGAGAAGAAAGCCTTCGAAGTGGCCAAGCTGGAAATGGGCGAGGATGAGGAGGACTCACAAGGAGCTCAGGGCGAGAGAGAGGTGATCCAGCCTGGTAAACTAAGGCTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAGCGCAAGGCAGCAGAGGCAGAGTACAAGAGAcgaatggaagaggagaggagggctttcGCCGAGGCCAGGAAAAGCATGATagtggatgatgatgatgaggtgtTCCTGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGCGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTTGCAGAGGCCCGCAAGAATATGAGCCCCCTGGATCGGGAAAAATCTAAGACTTCATATCAAGATGGAGAAGTGCTAGACGAGGAAGAGGAAGGGATGTTCAAGAGCGAGTCCCAGGAAGCATTGCACCCTGGGAAACTAGAGATGAACTTCGAGGAGCTGCTGAAGCAGAAGGAGGAAGCCGATAGGAAGCGCAAGGTGGAGGCGCGCAAAAAAAAAATGGAGCAGGAGAAACTGGAGTTTGAGCAGCTCAGACAAGAGATGGGAGAGGATGAAGTGAATGAGAGCTCTGATACAGTGAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAGAAGATCAAGCAGTTGAAAGACGAGGAGATCCAGAAAACGATTGAGGACGTGAGAGCAAAGAGAAAGGCCGTAGACGAGGAAATcaaagagagggaagaagagcgGGTCCAGGAGGAGGATGATGAAGGCAAAAAGGACACAGAGAAGGGGGCTGAGGAGGCTCCGTTCAGACAGAAGGTGGACATGCGCGCACGGTTCGAACAAATGGCCAAagccagagagggggaggagaggaaaagggtgGAGGAACAGAAACTGCAGAGGATGCAGTTCGAGCAGCAAGAGATTGACGCTGCTCTCCAAAAAAAaagggaagatgaggaggaggaagagggaagcaTCATCAATGGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACTGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGAATATGCTCCAGGACTGTGAGGACTATCAgtacatagagagaggggagacattCTGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGtacatgtgcaaagctgtcaacagcAGAGGCACCGCTGCCAGCACTTGTATCCTAACGATAGAAACTGAGGACTACTGATGCTTTCCTTTTTCTGGaactttccctgtctctctcactctttttgtATAATGTAATATCTCATGTTAGAGCCAAAAAGAGGAGGAAACAGCAGTATGCTAGCCATTCCTTCTAGGGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470520 lncRNA upstream 41608 53948635 ~ 53949648 (+) True G415144
TU470567 lncRNA upstream 164037 53826979 ~ 53827219 (+) True G415189
TU470560 lncRNA upstream 174164 53816853 ~ 53817092 (+) True G415182
TU470487 lncRNA upstream 263646 53727409 ~ 53727610 (+) True G415117
TU470482 lncRNA upstream 273093 53717793 ~ 53718163 (+) True G415112
TU470875 lncRNA downstream 2681 54007887 ~ 54008098 (+) True G415467
TU470882 lncRNA downstream 5385 54010591 ~ 54010880 (+) True G415474
TU470893 lncRNA downstream 11401 54016607 ~ 54018708 (+) True LOC118964527
TU470959 lncRNA downstream 72430 54077636 ~ 54077904 (+) True G415543
TU470963 lncRNA downstream 74263 54079469 ~ 54079672 (+) True G415547
XM_021603335.2 mRNA upstream 15024 53973591 ~ 53976232 (+) False LOC110524039
XM_021603336.2 mRNA upstream 15024 53974572 ~ 53976232 (+) True LOC110524039
XM_021603337.2 mRNA upstream 29433 53950830 ~ 53961823 (+) True LOC110524040
XM_021603332.2 mRNA upstream 50424 53929266 ~ 53940832 (+) True LOC110524036
XM_021603328.2 mRNA upstream 67368 53827956 ~ 53923888 (+) True LOC110524034
XR_005051583.1 mRNA downstream 11405 54016611 ~ 54018610 (+) False LOC118964527
XR_002473523.2 mRNA downstream 14739 54019945 ~ 54024157 (+) False LOC110524043
XR_002473521.2 mRNA downstream 14739 54019945 ~ 54024159 (+) False LOC110524043
XR_002473524.2 mRNA downstream 14739 54019945 ~ 54024504 (+) True LOC110524043
XM_021603340.2 mRNA downstream 43833 54049039 ~ 54057375 (+) True zgc:153738
TU469816 other upstream 878749 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1211777 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1229527 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2188436 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2852872 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 172723 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 323989 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 324874 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 341330 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 584868 54590074 ~ 54613142 (+) False G415946

Expression Profile