RNA id: XR_002473521.2


Basic Information

Item Value
RNA id XR_002473521.2
length 2938
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110524043
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54019945 ~ 54024504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaactatgtaaagaaaaaagtatttaataagaatatttcattcattaagatctaggatgtgttattttagtgttccctttatttttttgagcagtgtatttatttTCAAAAACAAAATCAATGACCAATCAAAATGATGATCTGCACATGTCAGAGAAGATTTTGGGTAATTATACAATTTTATCAAGCTGAATGCAACATTCATTCAATGTCCATTGTTATCATTATGACACTTCTGTTGCAGTATTGGTGGACCATATATTTGATTGCAGACATTGATGATGATGAGGACGAGTTGAGTGAGCTCTCCAGAGTGTCCTTCCACTCCTCCAGTTTGCCTCAGCCCAGTTCTGATAGTCAACCCatggtttgcatcccaaatggcaccctgttccttaCATAggtcactacttttgaccagagccctatgggctctGATCAAAGGTAGTGCGctaaataggaaatagggttctatttgggctCGTATATGATTACTGGACAGGAGCTCAAATATTTGGCCTGGTTTGAGTTCAAATGCTGTGATGTTTAGTGATAATGTCTTTCTGTGTTTTCTACCCAGAAATGGCGCATTCTTGGATCTAGCAGCAGTTTTTTGCAGTGCCGAGTGGAGGAGTCAGAGTTTCACAGAGTTTCACAGAGATATGGGATTGTACAGAAGAAGGAGCTTGTCaatttattgcggttttggacgGGCTTGTATTGAATGTCTTCAACAACCACAAGGAGCTCGATTCAGGCACTGGAAACCTGAACCTTCTCAAGGGAACAAGAGGTCGCAGTGACATTAAAATGCCGTCTTTATTTAGAACGTTATAATATCTGCAAGGTAAAAACACGTGGCTACATGACACATCTTCTGCCGTTGAAATTGCCATAGATCTACTGTACATTCTACAGATTGCGcctttaaaggtagactcaacgAGATGATGTTGCATGCACAAAGTAAACACACGGTGGGTCAATTAGCGCAACAACTAAGAGCCTTAAGGCGTGAAGCTAAACTTCTCCTCTGTTTTTGGTCCTGTAGTTGCCACGTTGTACTAGCGTGAAGCGTCCCAGTGCACATGTGCAGATACGCTGTGCGACTGTGTGAGAGCAAAGTCTTGCAACacactcatctcaatatctgccaTGCTGCTCGTTGCAACGTCACCtcgctgagtctacctctacTCAATCCTTCTGCACTATTTTAAAATCACGACTAATTAGTTAATAACACGTTCCGCATAGAGCAACACTAACAACCAAATAAGTTTTTGTTTTTAGTCCACTCTTTTTGACTTAATCAATGCCCGTGTCTACTCCCGTCAACCAAGATGCTCCATTTCCAGATACCTTTTGCTTTTATGATCATGTATGGTTTGATATGTTTTGAGGGCTGAATTCCAACCTGAAGACTCCCAAGTTCCCTATCTGGGCAATGGGCAGCGAGAGCCATTTCAGCGTGCTCTTCGGTGCGCAGGAGCAGCTGTTGAGTGACCAGTGTGGGCTCAGTGTGGGCTCCTGCTGATGGCCGAGCCAATCAGCAGGAGGAAATCTGCCTTACGCTGTAGCTGGCACAGGAATATCTGCCGGCTGCCAAGATATCAACACTGACCTCATTCCTCCTCTTGAACACTGTATACGGACAAAAAAGATGCCATTGTCGATTGGAACGGAACCAAGCCCATACTTTGATTGGCTGGTGGATAGAAGGTGATGACAGTCGATGAGATTAGGCTTTCCCCGTGGCTGGAGACAAAATATACTGCTTTGTTATTAAATAGATGTAGTTCCAAGTATATATTTGTATTGTATAAatagtattgtcttttatcaacAACCACACGTATCGACACGATCATGGAGGCCATTTTGTCCATgtcactgatgtcttgagatgttgtgtcaatatatccacatcaattTCCCTCATTGTTTTTGAAGATGTTACAGTAAGTGGTGCAGGGAGTGTTGATGCATACGCCCTAAAACGAGTCATTACCTCACGGTATCTTACATGGACATGCCCAAGATAAATAGGAGTGCCTTGGATTTGTCATAGCCCATGACACGCAGCTTTCGAGACCATTGGTCTTAATGTATTACACTATCCATAATGTCTTATGATATGTGGTGTGTATTTTTGACTGTAAATATTTGATATGACTGGTCAGAGTAATCTGTTTTATTAAGATAAAAGGTGTGGCTCACCTGTACCTTGCCTTTTGTCTTCTGTGGACTACTGCGCATGGGACACATGCAATGCCTTGATTGTCCTCACGCTGCCGCTGTTGAGTTGTAAATGAATCCTGAACGCAGTCAACTCTACTCATTCTTGGTTCCAgtgacagaagagaagagaagctatgtgaaatgtttatttttccaGGATATTTACAACAATAGTGTTTTTTTAAAACTTGAAATAAGTCAGACGTCAGTGGATTTGTGTAACACCTATAATGCATCTATGTAGTTTATGTACAGAATTTGAGTAAATAGTGGCACTTCAAAGAAATGCAACAATATTTATGAACGTTGGTACTTCTTTCTCCATTTCGCAAGAACTATACTCAAAGGTGGAGCCCGGTCAGTTTATTAGTGGCCATATTGTATGTATTTGAAGCTTGAGTGAttgcagaaacatctccacccacTCATGATAACGTCACACAATATATGAACATGGGCCTCTAGCCGGGGCCAAATAGTTTATTTCATTCTTTTGGCTGGAGTAGATGTCTCCTCAACTTAAGGTCATAGCAATATCACACACCGATAAAATATGTGTCATTGAATTGCAAATGTGAGAGTGATGACTTTGTATTTTTGGCATTTCTTTGACATTTTCAATCCCTTCAAATAATGTTTCTCACAGTAACATGTCAATTGTATTAAGTGATTTAtcttcaaatgtatatatttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470893 lncRNA upstream 1237 54016607 ~ 54018708 (+) True LOC118964527
TU470882 lncRNA upstream 9065 54010591 ~ 54010880 (+) True G415474
TU470875 lncRNA upstream 11847 54007887 ~ 54008098 (+) True G415467
TU470520 lncRNA upstream 70297 53948635 ~ 53949648 (+) True G415144
TU470567 lncRNA upstream 192726 53826979 ~ 53827219 (+) True G415189
TU470959 lncRNA downstream 53477 54077636 ~ 54077904 (+) True G415543
TU470963 lncRNA downstream 55310 54079469 ~ 54079672 (+) True G415547
TU470966 lncRNA downstream 57466 54081625 ~ 54081866 (+) True G415550
TU470968 lncRNA downstream 144958 54169117 ~ 54175086 (+) True G415552
TU471195 lncRNA downstream 241904 54266063 ~ 54266343 (+) True G415748
XR_005051583.1 mRNA upstream 1335 54016611 ~ 54018610 (+) False LOC118964527
XM_021603338.2 mRNA upstream 14739 53991256 ~ 54005206 (+) True LOC110524041
XM_021603339.2 mRNA upstream 15041 53991256 ~ 54004904 (+) False LOC110524041
XM_021603335.2 mRNA upstream 43713 53973591 ~ 53976232 (+) False LOC110524039
XM_021603340.2 mRNA downstream 24880 54049039 ~ 54057375 (+) True zgc:153738
XM_036979050.1 mRNA downstream 59196 54083355 ~ 54168958 (+) True obscna
XM_021603347.2 mRNA downstream 322322 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 350045 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 350161 54374320 ~ 54378738 (+) True LOC110524051
TU469816 other upstream 907438 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1240466 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1258216 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2217125 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2881561 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 153770 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 305036 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 305921 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 322377 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 565915 54590074 ~ 54613142 (+) False G415946

Expression Profile