RNA id: XM_021603340.2


Basic Information

Item Value
RNA id XM_021603340.2
length 3366
RNA type mRNA
GC content 0.50
exon number 19
gene id zgc:153738
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54049039 ~ 54057375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGCTATGGGAACAAACGGGACACAAATAAAAAAAGTTGTAGACTGCCTTGAGTTTATCAAGCTAGCTATGTAGCTAACGATGTTTGTGCAAACTGCTAACTgccaggattttttttttgtattagtTAGCAAACATTGAATTCAAAAGGCGTCATTGGCTACATAGAGATAGTTGCATCATGTCTCACAGTACATACAACAAACTGTGGGCTGATGCCCAGGTCGAGTTGAACTCCCTTCTGACTCAGGAGTTCCCTGCTCAGCCTCCTCGCCCAGAGAAGGACCGAGTGGTGTTCTTCCAATGCCTGGCCACCCTCTACGTGCGCTATGTGCAGATCTTCAGGCAGCTGGAGGAGGCCTATGACCAGGTGGTTCATCCCCAGAAGAGGAAAGTGATCcgggaggtcctggatggcgtgATGGGGCGGGTGCTGGAACTCAAGAATGAGATGGTGGAGAAAGAGTTCTCTGAGTACCATTACATGGACGACGTCATCCAGGACTTGAAGCTCACGCCTGAGGACATTGAGATCCCCATCCCTCGATATTTCCTCAGTGAACGCAGCAAGGTGTTGCAGGAGAGACGGAATATGCTCTCCAACATCCTCAACCTCATCGAGGTAGTAGAGCGACCCAAACCTGTAGGAGTGCGTGCACTGAACCTGGAGGAAGCCATAAAGATCATCCAGGTGTCAGAGAGGGCCCGTCAGGGTCGCCTGAGGGCCAAGTTCATGAGGGAGATCCAGCGCGATGAGGAAAGGCAGAGGAGGGCCAAGGACAGGGACCTGGGGGCAGCGGCCATCGACACGGCGGTGGTTCGCATCCAGAAGGTGTGGAAGGGTTATGTGCAGAGGAAAAGAacaaagagggagcgagaggaggagatgaTATTTTTGGGCATGGCCATGGAGCCCAGACACACCCAGCCCTGTCCTGCCATAACAGCTGCCCTGGCCAACGAGGCCCGTCGGAGAGGCAAGCAGGAGGAGCATGAGGAGGACTACCAGAAGTCCATTGTGGCCATCACAGACAAACTCAGAGAGGTGGAGGGGCCCGACATGAGGGAGACCATGAAGGACCAGATCAGACAGTGGTTCATCGAATGCCATGATGCAACAGGAACTTTCCCTGACTAcccagaggaggaggatggaggctcGACTCTCATCTTTGCGGAGAAAACACCTCAACAGTTAATGGAGGAACTAGCAGCGAAAGATGAGGAGGACGCCAACAAAAGCACGaaagggaaggaggagaagaaggacaaaGGGAAGAAAGACaagggaaagggaggagatgaGGAGGAGGAATCTGGGCTAAAGATGCTACCGTCTGCTTTCCTAGGAGAACTGGAAGTAGGACACAAGACCTTTGGTGAGGTGTGGCAGAATCGTACCGAGTCCAAGAACTTCAGCCAGAGGCACGAGGCTGAGCTGatcaaggaggagaagaggaaggagattgAGGTGGAGATCAGGTTGCAGGTGGATGAGCTGATGAGGCAGGAGCTGGCTAACTGGAAACTGGCCGTGGATAAAGATAAGGGTGGCAAAGCCAAGGGAGGCGCAAAGAAAAAGAAAGGGTCGAAAAGTggaaagaagaaaaagaaagacAAAGATCTGACAGCTGATAGGAATATTGAGTCTCTGTATCAGGAACTGGTGGAACAGGGCTTGTTGAAACAATCAGATAACGTTAAACTGCAGGATTATTTAGGCGACTATAGCTATCTGGGGACGACGTTAAGGCAAACTGACATTGAGCCCATGCCTTCGCTATCTGACGTGAGACAAGTTATAGCTCTGTACGCCGTCTTACCTTTAGGTTCTCAGGTGGTCCATGAGAAGGCTCCTCTGGTGAAGGCCATCCTGCTGGCAGGGCCCGCGGGCGTAGGCAAGAAGATGCTGGTCCATGCCATCTGCCAGGAGACGGGCGCCAACCTATTTGATCTGTCACCTCTGAACCTGGCAGGGAAATACCCCGGCAAGAGTGGCCTGGCCATGATGCTCCACATGGTGTTCAAGGTTGCCAGACTGTTGCAGCCATCAGTGGTGTGGATTGGAGATACAGAGAAAATGTTTTACAAGAAAGTACCGAAGGAGGAAAAAGAGTTAGATCCAAAACGCTTGAAGAAAGACTTGCCCAAGATCCTCAAATCGATCAAAGGGGAAGATCGCGTTCTAGTCGTGGGAACGACTCATGATCCGTTCAATGCCGACCTCAAATCACTATGCAAGGTGTACAGCAAAATTATCCTCATTCCACGTCCTGACTACGCCTCACGATATGTAATGTGGAGGCAGTTGATCAAGAAGAACGGAGGACAGGTGACGGCTGCCTTGGACCTGAGCTCCTTGGCCAAGATCTCTGATGGCTACACGCAGGGTCATATGGTGCAGGTGGTGCGCAGCATACTGACAGAGCGCCGCATCCAGCAGCTGGCCAAGAGACCCCTGGGCGCCGCCGAGTTTGTGGCCCCGCTGGCCAAGATCGACCCTGTGTTTCAGGACGAGGAGGAGGCCCTGAAGAATTGGTATGCTAAAACTCCTCTGGGTAAGAAGCGAGCCAAGGCTGCCtcaggaaaggagggagaggaggaggcaccGACAAAGGGAGGCAAAGATGCCAAGAAGAAAGGGAAGAAGTAAATCAAACAACGTCTTACCTTGACTGAACGCAACACAAAGAAAAACTGAGGTGGACACCAATAACATTTGCGCACCAGTTTCCTTGAAGTTATTGTATTTTAAATGAATCTGTATAATTTATTTCATTTTCTCTTCATGCACTGTCATTTTCTGTTCATGAATATGTCACATGGGCCAAACTGCTATTGGAGGGTTGCTTAAAGCAGAAAGTCAGGGGCATCCTGTAGTGGGTAGTGATATTTGtcatgtgtatatagtatatacagcCTCACAGCCTATTATAAACACCTCACATGCGACTCATAGTAACACTAAGTAATAAGCCTATTCAAATGTTTATCTGACTCCATGAAGAGGATTTAACAATATGCAAGAACACTATCGTTGAGTTACGAATAGGCAATCAAGAaatgtctgagaatggaattctaaatACTATCAGGTtacaggtaagacccaaatgcagactgtgttgaagtaacaatgtttattacagcaacaggggcagacaaacaacaggtcaaggcaggcaggggtcgataatccagagtagtgggcaACAGTACAGGACCGCAGGCAGGGTCCggggcaggcaggcgggctcagagtcaggacaggcaagggtcaaaaccagaagGGCAAGAAAAAGAGACgtgaaaagcaggagctgagacaaaacgctggttgactagacaaacaagacaaactggca

Function

GO: NA

KEGG:

id description
K24837 IQCA, DRC11; IQ and AAA domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470893 lncRNA upstream 30331 54016607 ~ 54018708 (+) True LOC118964527
TU470882 lncRNA upstream 38159 54010591 ~ 54010880 (+) True G415474
TU470875 lncRNA upstream 40941 54007887 ~ 54008098 (+) True G415467
TU470520 lncRNA upstream 99391 53948635 ~ 53949648 (+) True G415144
TU470567 lncRNA upstream 221820 53826979 ~ 53827219 (+) True G415189
TU470959 lncRNA downstream 20261 54077636 ~ 54077904 (+) True G415543
TU470963 lncRNA downstream 22094 54079469 ~ 54079672 (+) True G415547
TU470966 lncRNA downstream 24250 54081625 ~ 54081866 (+) True G415550
TU470968 lncRNA downstream 111742 54169117 ~ 54175086 (+) True G415552
TU471195 lncRNA downstream 208688 54266063 ~ 54266343 (+) True G415748
XR_002473524.2 mRNA upstream 24535 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 24880 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 24882 54019945 ~ 54024157 (+) False LOC110524043
XR_005051583.1 mRNA upstream 30429 54016611 ~ 54018610 (+) False LOC118964527
XM_021603338.2 mRNA upstream 43833 53991256 ~ 54005206 (+) True LOC110524041
XM_036979050.1 mRNA downstream 25980 54083355 ~ 54168958 (+) True obscna
XM_021603347.2 mRNA downstream 289106 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 316829 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 316945 54374320 ~ 54378738 (+) True LOC110524051
XM_021603351.2 mRNA downstream 490138 54547513 ~ 54550162 (+) True dio1
TU469816 other upstream 936532 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1269560 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1287310 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2246219 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2910655 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 120554 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 271820 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 272705 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 289161 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 532699 54590074 ~ 54613142 (+) False G415946

Expression Profile