RNA id: TU471273


Basic Information

Item Value
RNA id TU471273
length 1292
lncRNA type read_through
GC content 0.42
exon number 2
gene id mutyh
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54346481 ~ 54395448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgaagtcggaagtttaaatacaacTCAGCCAagtatatttaaactcagtttttaacaattcctgacatttaatcctagaaagaaattccctgttttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagggggatatatttcagcttgtatttctttcatcacattcccagtgggtcagaagtttacataccctcaattagtatttggtagcattgtctttaaattatTTATCTTGGGTCAagcgtttcaggtagccttccacaagtttcctacaataagatgggtgaatcttggcccattcctcctgacagagatggtgtaactgagtcaggtttgtaggcctccttgctcgcacacgccttttcagttctgcccacaaatggtctattggattgaggtcagggctttgtgatggccactccaatacattgcctttgttgtccttaagccattttgccacaactttggaagtatacttggggtcattgtccacttggaagacccatttgtgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatacatccacataattttcatacctcatgatgccatctattttgtgaagtgcaccagtccctcatgcagcaaagcacccccacaacatgatgctgccacccccgtgcttcccagttgggtgttctttggcttgcaagtatccccctttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccaggaaatttctccaaaaagtacaatatttgtccccatgtgcagttgcaaaccgtagtctgactttttatggccactgagcagcctttcaggttatgtcgatataggacttgttttactgtggctatagataatTTTATACCTGTGTCCTCcggtcctccagcatcttcacaaggtcctttgctgttgttctgggattgttttgcacttttcgcactagagtacattcatctttaggagacagaactcgtctccttcctgagcggtatgatggctgtgtgttcccatggtgtttatacttgcatactattgtttgtacagatgaacgtggtaccttcaggtgtttggaaattgctcccaaggatgatccagacttgtggaggtcttgactgatatcttttgatttccccatgatgttaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaatttactcaaatgaagtcaattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471271 lncRNA upstream 18548 54344875 ~ 54345101 (+) True G415819
TU471264 lncRNA upstream 29596 54333817 ~ 54334053 (+) True G415812
TU471259 lncRNA upstream 34953 54328399 ~ 54328696 (+) True G415807
TU471197 lncRNA upstream 51508 54308835 ~ 54312141 (+) True G415750
TU471195 lncRNA upstream 97306 54266063 ~ 54266343 (+) True G415748
TU471349 lncRNA downstream 62782 54458230 ~ 54493001 (+) False G415886
TU471353 lncRNA downstream 62782 54458230 ~ 54462509 (+) False G415886
TU471348 lncRNA downstream 65288 54460736 ~ 54462509 (+) False G415886
TU471357 lncRNA downstream 96731 54492179 ~ 54495349 (+) False G415886
TU471355 lncRNA downstream 99244 54494692 ~ 54496389 (+) True G415886
XM_036979050.1 mRNA upstream 194691 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 306274 54049039 ~ 54057375 (+) True zgc:153738
XR_002473524.2 mRNA upstream 339145 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 339490 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 339492 54019945 ~ 54024157 (+) False LOC110524043
XM_021603351.2 mRNA downstream 152065 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 156907 54552355 ~ 54554389 (+) True LOC110522872
XM_036977854.1 mRNA downstream 194510 54589958 ~ 54595332 (+) True LOC118964620
XM_036977852.1 mRNA downstream 200049 54595497 ~ 54613143 (+) True LOC110524055
XM_021603358.2 mRNA downstream 222076 54617524 ~ 54620337 (+) True fpgt
TU471274 other upstream 13034 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 33169 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 33869 54329195 ~ 54329780 (+) True G415808
TU471018 other upstream 180219 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1251142 53112183 ~ 53112507 (+) True G414488
TU471439 other downstream 194626 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 194626 54590074 ~ 54613142 (+) False G415946
TU472519 other downstream 929197 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 2222442 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2330737 56726185 ~ 56729821 (+) True G418119

Expression Profile