RNA id: XM_021603351.2


Basic Information

Item Value
RNA id XM_021603351.2
length 1640
RNA type mRNA
GC content 0.41
exon number 4
gene id dio1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54547513 ~ 54550162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGTCAAATCGCATACATGTCAGGGGTAAAAGTAACGTTTAGACAAAAGCCCACAAAGACGGTCGAGGAAGGAGTGTTTGTTTGCACAACGTTCCACTCTGCCATAAAATAGGCTAGAAATCACGCATAGGCTATTGTTTCGCTGAGCACCAAAGAAAAAGATGATATTAATATGGAAATGGTTCATTTATCTGTCAATGCCATGTTTATTTTGCTTTGCGTTCATGCAATTTGTCTTTCTCACGCTTCTGAATTTGATTTCACGAAGCTTGACCAAGAAACTTATCTTAAAAATGGGCGAAAAGGTAACTATGACCCAGAATCCGAAGTTCAAGTATGAAGATTGGGGACCGACTTTTATGTCATGGAATTTTGTCAAGACCATCCTAGGGCACATGTGGACTAATGTCGGTCAAGAAGCTTTTGTGGGCAACAATGCTCCCGACTCACCAGTGATTACATTGGACGGCAAGATTACCAGTATCTACAACTATTTGAAAGACAACAGACCACTGGTGTTGAGTTTTGGAAGTTGTACTTGACCCCCGTTCATGTATAAACTTTGCGAGTTCAAGCAACTCGTCAAGGACTTCGGCGATGTGGCAGACTTCCTGGTGGTCTACGTTGCCGAGGCGCATTCAACAGACGGTTGGGTCTTTGCCAACAACTTTGACATTACTAAACACCGAAACCAGGAGGAGCGGCTGGCTGCAGCACAGTTCCTGGTCAAAGAGGACCCCCTGTGCCCCATCGTAGTGGATGAAATGAAAGACACCACAGCTAGTAAATATGGTGCTATTCCAGAGCGGCTGTATGTGCTGCAGGCAGGAAAGGTTGTTTATAAGGGAAAGATTGGGCCAAGAGGCTACAGCCCTGAGGAGGTGCGCTCCTTCCTGGAGAAAATGAAGTAGGAAGAGGTGAAtcacatctgtcattttaactATTTTTCTGTTATTTTTTTGTTATCTTGTCTCATATTATTATGTGTAATTCTGCTCTCTGGCATCCCAATTATCCACCTTTATAGTTTGGAGACTGTTTTTTAGTGACAGACACAGATCAAGCCTATGGCCTCTGTAACCCGATGAGGAGACACCTGGAGAGAGACCATTCAATCAGAATGGATGGGTTGATAAAACAAGGAACTTATCATAGGAAGTAAAGGTGGTTGTTAATTCTGACCTTGAGTAAAAAATGACCTTTATCCAAATATGCAGTTCAGGTCAGAGTTGTTATATTGTATTGACATAACTGCACTATCATAACTTTTCTAAGGGCCGAGTGTGAAACAAGCCCTTTGCCTGCTAGATTATCAATATGCATTTCGTACGGGATCTTGTActtcacaaaacattaagaatttCTCAAATGTAGGTAGGTCTAGTTGATGTGTAATAGCCGTATAGTAATTGCACTGGCATATCTGTAACCATTCTCTTGATACATTGTCTATGAATGTTCATAAGTTACTTTGGGATACAACTGCTTTTTCCATGATGATTACAGTGCAAACCTCTGGTCATTGTAATTTGATGAACTGAAAGCAGTTTTGTTGCTAAATAATTTAGGAGCATTTAGAGCATGTTGTTGTGGTGATTGAGGATATACCTGCTTATTAAAAACTCTTCATGAACTGA

Function

GO:

id name namespace
GO:0042446 hormone biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004800 thyroxine 5'-deiodinase activity molecular_function

KEGG:

id description
K01562 DIO1; type I thyroxine 5'-deiodinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471365 lncRNA upstream 33964 54503035 ~ 54513549 (+) False G415887
TU471367 lncRNA upstream 33964 54505555 ~ 54513549 (+) True G415887
TU471355 lncRNA upstream 51124 54494692 ~ 54496389 (+) True G415886
TU471357 lncRNA upstream 52164 54492179 ~ 54495349 (+) False G415886
TU471349 lncRNA upstream 54512 54458230 ~ 54493001 (+) False G415886
TU471401 lncRNA downstream 4914 54555076 ~ 54556336 (+) True G415914
TU471438 lncRNA downstream 39912 54590074 ~ 54613142 (+) False G415946
TU471452 lncRNA downstream 39912 54590074 ~ 54613142 (+) False G415946
TU471454 lncRNA downstream 60579 54610741 ~ 54613142 (+) True G415946
TU471519 lncRNA downstream 138420 54688582 ~ 54688882 (+) True G416005
XM_021603350.2 mRNA upstream 168775 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA upstream 168775 54374320 ~ 54378738 (+) True LOC110524051
XM_021603347.2 mRNA upstream 183798 54346481 ~ 54363715 (+) False mutyh
XM_036979050.1 mRNA upstream 378555 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 490138 54049039 ~ 54057375 (+) True zgc:153738
XM_036979051.1 mRNA downstream 2193 54552355 ~ 54554389 (+) True LOC110522872
XM_036977854.1 mRNA downstream 39796 54589958 ~ 54595332 (+) True LOC118964620
XM_036977852.1 mRNA downstream 45335 54595497 ~ 54613143 (+) True LOC110524055
XM_021603358.2 mRNA downstream 67362 54617524 ~ 54620337 (+) True fpgt
LOC118964715 mRNA downstream 73528 54623690 ~ 54636937 (+) True LOC118964715
TU471274 other upstream 196898 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 217033 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 217733 54329195 ~ 54329780 (+) True G415808
TU471018 other upstream 364083 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1435006 53112183 ~ 53112507 (+) True G414488
TU471439 other downstream 39912 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 39912 54590074 ~ 54613142 (+) False G415946
TU472519 other downstream 774483 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 2067728 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2176023 56726185 ~ 56729821 (+) True G418119

Expression Profile