RNA id: XM_021603358.2


Basic Information

Item Value
RNA id XM_021603358.2
length 2295
RNA type mRNA
GC content 0.48
exon number 4
gene id fpgt
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54617524 ~ 54620337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATAATCATGTGACTAGACCCGGAAATTAGGCAGGTGACATCACTGCAGCAGTTTCGAGTCAAAACATTTCAATTTCAATCCATTCCATATCCACAAGAACTGAATATGCTACATTTAAAAATTGAATGACGCAAATGTGATGTTAGTTGTTCTGCGGATGCCTGTTTCGTATGCATTAGACCACTTGACTTTGAGCCAGGAGAATGAACGAACAAGGAAGTAAAAAGTTGCAAATTGCAACAATGGAGAAACTTGAGAGATTCGATACATTACGTGGTAAGCAGGTGCAACCTGGAGAGTTTTGGGATCTAGTTGTTTTAACCGCTGTAGATGACAACCAGAGAGAAGCATACGAACTTCAGATCTCAGAGAAACTTGGGAGGAAAGAGATCCCACTTGGCATTTCATATCACGTGTTCTCAGATCCACCTGGAGCCAAAATAGGAAATGGAGGCGCAACACTGTACTCTCTGCAACGGCTGGAAGACATCTATGGGAAGGCTCTGGGTGGATACAGGATCCTTCTGATTCATGCAGGTGGATTCAGTCAGCGTTTGCCCAATGCCAGTGCCCTGGGGAAAATCTTCACCCCCATGCCCTTGGGTGACCCTCTTTACCAGATGCTGGAGCTCAAACTGGCCGTGTTTGTGGATTTACCCAAGCACATGAAACCGGGTGTGCTGGTAACCAGTGCGGATTGCATAGAGCTCTACAGTATAGCGGAGGATGAGAACATCAGGTTTGACAGGTCTGGGTTCACTGCTCTAGcccatccctcccccatctccATTGGAACAACCCACGGAGTCTTTGTGCTGGACCAGAAGGAGAAGTCTGTATTGGCCGACATGGAATACAGGACATGCCTCCATTTTCTGCACAAACCTAGCGTCAAGAAGATGCATGAAAACGGTGCTGTGTGTAAGAGCCAGGATAGCTGTATGTCACTTCTGAGTGATGCAGAGTTTGTGTACACAGACAGTACATATTATGTAGATTACAACACTGCAATGTCATTGCTTAGTCTATTCCGAGAAGTGGGTCCTTTGGGCTGTGAGATAGATGCCTATGGGGACTTCCTTCAGGCCCTGGGTCCCCAAGCCACAGTGGCTTACACCAACAACACTGCCAACGTCACCAAGCAGGAGAGCAACCTGGTGGAGATGCGTCAGAAGATCTTCCACTGCCTTAAGGGAACCCCGCTCAACCTGGTGGCTCTCAACCACTCTAAGTTTTACCACATCGGCACCACCACAGAGTACCTCTTCTACCTCACAGAGGACCCGTGCCTGAGGGGTGAGCTGGGACTATACAAGGTGCTAGGCTACAGCCAACACTTTAGCTTTAAGGTCTGCTGTGTGATGCTCAGTGACGTGAAGCCCGGCTGCTCTTTAACTCCAGGCTCGGTGGTAGAGTACTGCAGGCTGGAGGCCGGCGCTCATGTTGGCGGGCGGACCATACTCAGCGGTTGCTGGGTAGGTGCGGGCCTGAAAGTGCCTGATGGAACCTTCATGCACTCCCTCTGCGTGAACCGGGAGGGCCAAACCGGTTTTGTTACCGTCACCTTCGGCATCGAGGATGACCTCAAGAAGAGCGTGGGGTCCCCTGCGAATATGGAGGGCTTGAACCTGTTCGGGGCCAGTTTGGTCGAGTGCCTGGCTAAGTGGGGCCTGAGTCCCGAGAGCCTGAGGTTCTCTGGTGACACATCGAGTTGTAGTCTTTGGAACGCCTGTCTCTTCCCTGTGTGCCCGGACATGCGCAactccttctccctgactctgGAGATGCTGCAGCCGGGTGGGTCCACTGTCACGTTGCCCCCAGGCACCAAGCTGATGTCTCTACAGGAGGCCCTGCAATGTAAAAACTTGGAGGAGATGCTCAAGTACAGGAAGAAACTAATGGAGGATGTAAAGATGAAGAAATGGAGCTGACTGAGCTATAGTGATTAGGCTACTATTGATTGTAATACCATTGTGCCTTTTGTAATCATGATCGGAAGGATTGTGTGTTAAATTGAACTGAAGTAGGGATACAATGTGGTGGGCATTTGGTAGCATTCGGGTACAATGGTTGGATCAGCTATTTGATACATAAACGGGACATTTGGAGGTAgcttttttttgttatttctgttgtatatataaaaaaaaattatggGGAAACAATTGGGTAATGACAATccattttgtaataatgacagaaAATATTTGAGATTTGTGTTTGTCGCTTCATTGTCCTATGCTGGTGTGGGACACTTTCCTCAGAATTAAAATAGATTCTGGTACTGTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00976 FPGT; fucose-1-phosphate guanylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471438 lncRNA upstream 4382 54590074 ~ 54613142 (+) False G415946
TU471452 lncRNA upstream 4382 54590074 ~ 54613142 (+) False G415946
TU471454 lncRNA upstream 4382 54610741 ~ 54613142 (+) True G415946
TU471401 lncRNA upstream 61188 54555076 ~ 54556336 (+) True G415914
TU471365 lncRNA upstream 103975 54503035 ~ 54513549 (+) False G415887
TU471519 lncRNA downstream 68245 54688582 ~ 54688882 (+) True G416005
TU471947 lncRNA downstream 215276 54835613 ~ 54837792 (+) True G416362
TU471955 lncRNA downstream 219025 54839362 ~ 54839580 (+) True G416367
TU471965 lncRNA downstream 238693 54859030 ~ 54859350 (+) True G416377
TU471966 lncRNA downstream 239104 54859441 ~ 54859821 (+) True G416378
XM_036977852.1 mRNA upstream 4381 54595497 ~ 54613143 (+) True LOC110524055
XM_036977854.1 mRNA upstream 22192 54589958 ~ 54595332 (+) True LOC118964620
XM_036979051.1 mRNA upstream 63135 54552355 ~ 54554389 (+) True LOC110522872
XM_021603351.2 mRNA upstream 67362 54547513 ~ 54550162 (+) True dio1
XM_021603350.2 mRNA upstream 238786 54374204 ~ 54378738 (+) False LOC110524051
LOC118964715 mRNA downstream 3353 54623690 ~ 54636937 (+) True LOC118964715
XM_021603360.2 mRNA downstream 81775 54702112 ~ 54716209 (+) False LOC110524059
XM_021603362.2 mRNA downstream 81775 54702112 ~ 54716209 (+) False LOC110524059
XM_021603361.2 mRNA downstream 82536 54702873 ~ 54716209 (+) True LOC110524059
XM_021603368.2 mRNA downstream 198276 54818613 ~ 54833842 (+) False LOC110524062
TU471439 other upstream 4382 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 4382 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 266909 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 287044 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 287744 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 704308 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1997553 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2105848 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 2303587 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 2323501 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile