RNA id: XM_021603359.2



Basic Information


Item Value
RNA id XM_021603359.2
length 7577
RNA type mRNA
GC content 0.47
exon number 15
gene id erich3
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54640281 ~ 54661854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCCGCTCGGAAAGAAGTGTAGCAAGTACAGTCAGGTTTTACCAAGCCGGGCATTCGAATAGGACAGAATTCTATCGTCTGGTTCTATATTTGCATGTATTTGAGCAAGGCGGACAGTCTTCCGACCCGGAGTGCTCCGTTTATTATATGAAACTGCATCCCGAAATCATGAGTCACCTATACCCAGGGCTACTTTCAGCCTACAACAGTCTGACAGACAAACACCTTACTGGATACTTCAACAACACCCGGATCAGGAGACATCTCCAGAGAGTTGGCCTGATCACCAGGAGTGGGCGGATTGTCCCAGACAAAGAGTACAGATACAATGTGATGCAGAGAGCGCACCAGAGGCATGTGAGGGAATGCCTGGCCCAGGCCATCTTCCATAAGGTGCTGGAcatggagCGTCTCCATCAGATCGAGATCAAGAGGAAGTTGGAGGATTTTGCCCGGAGGGAGAGAGTGCATAAAATCAAGGTGGAACGTTCCAAGAGGTACGAGGAGGAGATAATCCATATCCTGTCTCCACGGCCGCCCACGGGCCCCAGGGTCTCCCACGCACAGCATTCTGGCCCAGAGGGGGAGCACTCTGAATCCTCTGAATCTcCGGGCTCGTCTCGACCCAACACGGCTCCAGGGAAGATGCAGAGGCCGGTGCGTCTGAAGCCCATCCATAGTAACAGCACCACAGcctcccacagacacacctccccCTACAGGCCCCATGACTCCTCCAATGAAACGGACCAGCCTTTCAACTGCATTATGGACAAAGACTCCAGAAGACATTTGACCGGGACAGAGTTTTCCCGTGGTATATCCCCCTACCGCCTTCCAGTCATCAACAACTTTGTTACCCCAGTGCCACCACCGACTAAAAGGAAAGAGAGGGGCGGTTTTAAGGGTACCCCCAATGGCACTTTCAGGGGACGGAGACTGCGCCCCACCACGGCCCCAAGTGGTCCCGGAATGACGGagGACTCTACTCTCCCGCGGACCTCTGTGCAGAGCAAAGTATGTGTGAGCATGGTGTTCTTTGGGAAGACAGTGCACTTGTCACATGACCTGATGGACATGAGGGATGAGGTGAAGGTGTTCCAGCAGCACTGTGGGGGAGAGAACCTGTGTGTGTACAAGGGCAGACTCCAGGAGGGAGAGACGTTCCAGTTTGTGTCGCGGCGCCACCGTGGCTTCCCCTTCAGCCTGACGTTCTTTCTCAACGGGCTGCAGGTGGAGCGCCTCAGCTCCTGCTGTGAGTTCAAACACAGGAAGGGTTCCCGGCTAGGCGGCCGCCACGGACATTTTGGATTCTCCAGCACGGAGGGAGCCTCGCCCTGCTACAGGTGTATCATAGCCATGGGGTTAGACAAGAAGCCCACCCCTCATCCAAAGAGAGTCAAAGAGGAAATCATAGTCACCCGCCCTCTAAAcactgggaaggacactgcaggggtggaggaggagatgatTGGTAAAGACAGTCACTCTCAACCAGAGCCTGAGACAACTCAGCCACAggacatggagacagagatcaaAGAAGACATTCCAGAAGAGGAGGACAAACCAAAAGATGACTATGAAGAGGACTTTGAGGCGGATGACGAGGGGCAggctgaggacagaggagaagagaaagacaagAAAAGTGTTCCTCCCTccagggaaagagaaggagaggatagagagaaatgCGACCAGTCTGACAGTGAGGACGATGACAAAGTTGAAGAGAGAAGGTCAAGGTCGAGGTCAGACTCCAGCTCCTCCGGAAGTGACATGGATGACAGTGAGGCTGAGGCCAAGGAGGACCAAGCAGTCAACCAGGCAGCTGACCTAGAGGAGGCTCTTCCCCAGGCTGAACAGGCAAAAGACACCCCCACCACCATAGCACCTGATCCAGACCAACCACTCACAGAGGATCCCACCACAGCAACAGAGAGCAGCTCTCCTACCCCACCCCAGACCACCTCGACTGGGGAGGAAGACACAGGGACCTTGGGGTACAGCCCTGGGGACAGCACAGCGAGACCCACAGAGCTTGAGGTGTCAGACACAAGTGGGCTGTcggaggaggggaaagggaatgATGATGGGAGTGCTGAGGCTAAGGAGGAAGACGACAAGGAGAGTGGGGCTAAGGCGGAGGGTGAGTCGACACAGGAGGAGGAGCCTGAGAGGGCCAAGTCTGTGCAGGAGAAACTAGCAGAGGCCATTTTTAAGGAGGCTCAGAGTCACTCAGAGCCAGAGCTGAGTGACACCAGCACTGAGACGGAGGAAGACCCCACTGAGAAAAACCAACAACCGGACACCATTGGTACGGAACCAGAGCAAGCCGGGGCTTTTACTCTGGAGCGTCAGATCAGTACAGAGGAAGTGAAGTGTGAGGAAAGTTCACTCAGTGCACAGGAAATTACCTCACAGAGTTCTGCCGAGGGAAAAGAAGTCGGGACTGAgctgaaggaagaggaggaagatggtgCACCGGAGTCTGAACAGATAACTGAAGAAACCAGTGGTGTGACAGAGGCGAAAGAGGAGGATCCAAAAGCCAGTCCGGAGACGGATGATCAAGAGGAGGCAGACAGCAAAGTAGAAACAAAGGGGAAAGAAGAGGGTGAAGAAACTAAGGGCAACCAGGAAGAAGATGAGGCTGTGGATCTTCAGGCGGGCGAGCCAGCTAAAGCAAGTGATTCTGTAACTAGTAAAGAGCAGCAGGAAGAGAAAAACACAGCAGATCCTGACATACCACCTAGTGAGTCAGAGGAGATGAAAAGCACCAAAGATGAGTCATCTGCACCAGAAGAACCAGGGAGCAAGACTGAGATAGAAACAGCTGTGACGGATGAGGCAGGGACTGAGGTGGCAGAGAGTGAAGCAGTAGAGATGAAAGCAAAGCCCATTGCGGATTCAGAGTCCCATAGCCATAAAGAGATGCCTATAACTGACAGGGACAggcagggagatggggaggaggacacGGTTGGAGGCACAGAGATAGAAGTCACAGCAGATAATTCAAGCAGCGTGTCAGAGAAAAGTGGAGATACTACTGTCTGTGCTGAaaagacagcagagggagctgaGAAGAGTGAGGATGCACCTGGAGAAACCGAAGCCAAACTTGAGAGTGACACAGGGGAGGCTATGAAGGAAGACAAACGAGAAAAAGAAGCTGGTCCGGATGAAGTTGGAGGAGAAACTACTACAGAGGATAAGGCAAGTGATAAGGTAGAAAAGTATTTTGCCCAAATTGAAGAAGGGAAAGTAAAGGACGGTGAAACGACTGGAAATGATAAGAAAGAAGAAAAGCAAGAGACTGAGGAAGTAAATACTGGAGAAGctaagagagatgaagagaaagttAGTGAGGGTAAGGTAGACAGAAGTGAGAAAGATGGGGAGGATAACGCAGAAGAGGGGACACAGGGTGGAGAAAATGCTCAGGGGAATAAGGCAGAGGAGGGAGAAACAGATGACAGCAAAAAGGCAGCAGAAGTAGAAGATAAGGTGGAGTGTGAAGAGAAGGTTGGACAGGCAGAAAAGGAAGACGATGATGGAGAGGAAATTGTAAAAGAAGAGGGCAAGCTAGAACATGGGGAAATGGTTGAAGAAAATAAAGTAGCAAAAATATCTGAGCATgaaacaggagagaaagagggagaggaagtagtTGAGGAAAATGTTGTGGATGCAAAGGAAGCCAGTAAACTTAAAGCAGAGGAAGGAGAAAACATGACAACAACTGAGGTCAAAGTTGAAGAGACTGAGATCAAAGACAATGTTCAAGAATCTGTATGTGATGCGGACGAGAATGATGAACTTGATGTAGAGAGTGGCTCAGCTCCAATTGTTGGAGATAGCACTGCGGCCAGAGAAGAGACCCTAGTCAGCAGGAAAGAAACAGAGAAAAAGGACAGTGAGGTAGATTCTGAAAATGGAGAGACAGCTGCAGCCTCTGAAGTTCAGAGTGACACCGCAAGAGGGGAGACAGAGTCCACAAACCAAGATACCCAAGGCAAAAACAAGGTAGATGAAAAGGACAAGGGGGCAGAAACAAAGACAGATGACCTAAACAAGGTGGAGACAGAGGAAGATCCTAAAGACCAGGAAGAGGCAAATGACAAATGTGAAAATACCAAAGTAGATCAGGATGCAGACACAGAAGACAAAGAATCTAAGGCTGAGGAATATAACAGagatagccatgctggttcacACGTAGGGGACCCAGAGCCAGTTAACACTGGGGCTGAATCCAAAGAAGAGGCTATGTCAGAGAATGCTAATAAGGAGACTAAGAATGTCAAGGAGATAGAGGCGTCTGTAGAGTCTCAAGAGCAGTCTGAACTAAAAACTCAGTCAAAGGACCGAATTGTAGATGCTACACTTGAGAGTGCAGATAAGAACCAAGATACAAGCACAGATCACTTGGATGATGGCAAAGAGAAAGTTAGTGATGGTACTACAGAGGTGATTGTTGTTTCTGAAGAGACACAAGCTCCAGCTTCAGAACCCAGAGCTATGGAGCTAGAAGATACCACAGAGACTGAATCAGATCTGAAGGAAAAAGAACGTAAAACGGAAGACGAATCCACAGAAGGGGCAAGCAAGCCATCTGAAGAAGGAGCCAGCGTTGTCCTCAAACCTCAGTCAGAAACACAACAAAAAGAAAGCACTGCATCAGGTAAAGACGCTAATGTACTTGAGGAAAGTGTTAAAGCTGAGGACCATGCTGCAACTCCAGAGACCTTGGAGAAAGGAGACAATAGGGATCTTGTAACTAACTGGGTGAATGTACATCAATCCTCAAAGTTCTTTGAGACATTCATAGAGCCCCTAGATGACTTTACTTCTGACAATGTCATCAGTGAGTCTAATTCGGATGCCAGGGCTATAGCGCCAACACACGTGACCGAAATTTCCAGACCAGAGAGACCTACTAAAACGGCAAAGACACCAGACCCGAAACCTGACGATCATGATACCAATGCTTCGGAGAGGAGCGCAGCTGTTGGAGGCGGAGCTGGCACCATTGTTGAGAGTATAGTTACAGAACTTAAAGAGGCAGCCCCATCCACAAAGGATGACAATGAGTCAAACAGTAATAACAAGGTGGAAGTGATCCAGTCAGATCTCAGTAGTACTCACTCAAGAGACGATGACGCCAGTGAAACTGGGCTAACGAAATACTCTCTCGAGGTGGAAGAGGGAACAGAAGTCACTCTCTTCACACTCTCTGCTGAACTTGAAGACAGCAGTAGAGAAGACACAGCTGGGCCACGGGAGGAGGGTCAGGGTTATTCAGAGGAGCTCAAACAAACAACAGGGATGTCTGAGGATGACAAGGACAAAGATATGACAATGCAGGGAGAAACTGATCTGACAGAAATGTCCAAAACTGATGTTGAAAGGATACAGGGCTCTAACCATTCAGCTGCCAGTGGCAGGCCTGAAAAGATCATTGAGGATCCAGCAGAGACTGAAGAAACCAAAGACAATTCTGGGTTGGACGGGCAACAAACATTGCAAGAGATAACCGTCCTGACAACGCTTTCCAAAAATGGAGATGAAACACAGGAGCAGTCTGAGAGTCCAGAGAATCACTCTGAATCTGGCACAACGTCAAGAGAACCAGAAGACACCAAAGATACAAAGGAACCGAAAGAGCAAGAGGCTGCAGAGGTTACAGAAATAACAGAGCTAAGAGCCATTTCTAAATCTGAGAATGAGAGCCAGGAATACTCCCAAAGTGTACAGCTCCGTTCTAAACAACTGGATGGAAGCAGGAGGGGAGACAAAGAAGATCTACAGCTGATTGACCAGCTGAGCACCTGCTCAGTGGAAGACTCTTCGCTGTTTGGCCACACCTCATACCCTCTGTTGACAACTGCACCAACTGACAGTAACTATTAGAAAGCAACAGGCTGGCACAAGGCACACGAGACAATCAGATGACTGCAGGCTGACCAGGAAGGATATTCTTCGACATCACATTCTTTCCGGAGTTGCGTTATTCTTGAGAGGGACTTGCTGTAATGGTTCTCATGAGAGGACACTGCAGGAACAGTCGCTCCACAATTGTGAATACATGTTTGAGTTTACTAAGAGCTTTAATGatttcccccttttttttttaccaacaaAAAAAGTCTGGGTCATGAAAATGTGTCTTTATAAAAGGTTTTGATAGTAGCATAGATGTTTACAACCATCCCTTTTTGGGGACAAACAGTGAGGCCTTGTCTGCTGGAGGTATCAAGCACAGGTGCTGTCACCAGCCCCCTGTAAACAGATACCCCTCAATTCACGCTgcacaaataaataaatcattcatAGTCGTTAAGCCTTGTGGAGGCCAGCTTGCCCCAAAGCACCTTAACACACTTCGCAAGGCATGGTCGTGTGATGATTGGTTTGGAGAGAAAATAAAATACCACTGACTTAAAGCACTACAACACTTTTGCGTTGATGACAAAGACCTGATTGGATAATAGTTTGGCACGGGCGAGGAAATACAGTTGGCTCTTTATACTGGATGTATAACCTTAATTACACAGATAATGTTCATTGTTTATACACAGAAAGAAGATGTATGAGATATATTTCCATATTTTACATGGTGATAACTCTCCAGAGATTTGTTTCACTTTATCTGTAACGTATACATGATCTGTTGTCACAAATTGTATCCCTGCATTTCCATTCAACTTTCTAAGTGATTACAATGTATTGCTTTCGAGAATTTTCGAATCCAATTTAATGGACATGCATTGAAATCAAATTCACCCAGTTCATTTGAAAATATTGAATGTCATACATAAAACATACAATGAATGCCTGCTGTACACAACTACATAAACAGTAATAAtaaagacttgcctagttaaataaaggttaaataaaaggtcaaaggtcaaacaAACAGTAATAATAGTTGGAGAAATTGTGAAATGTCCTATGTAGGAAACAGTTTGTGTCAAAATGTGTTGCTGCTAACACATCTAATACCTGTATCATTCTTGGTTCAATTATTTATtcagttggggcggcagggtagcctagtggttagagcggtggactagtaaccggaaggttggaagttcaaatccctgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagagttaacccactgttcctaggccgtcatcttCAGTTGCCATTCATTATGAATCCTGTATTTAATAATGGTGTTTATTGTCACAAACAGCAAATGTGTGCAGTGAAATGttgtgttttacagggtcagccatagtagtacggcgcccctggagcaaattagggttaagtgacattgctcaagggcacgtcgactgatttttcaccttgtcggctcgggtattcaaaccagcgaccttgcagttactgacccaacgctataaccactaagctacctgtcgCCTAGTTTGGCATAGTTTGGTTAGGATTCTTCCTGTTTACGTATAAATTGTTTACGTATATATCATATCAATGTCAAATCATCTAGAATGAAACTCAATGTGATTTCTCTATTTTATTGAAAAATAAAAGCAAAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU471719 lncRNA downstream 144917 54458229 ~ 54495364 (-) False G416166
TU471707 lncRNA downstream 177765 54460802 ~ 54462516 (-) True G416166
TU471655 lncRNA downstream 259187 54377683 ~ 54381094 (-) False G416123
TU471997 lncRNA upstream 170614 54832468 ~ 54833938 (-) True G416409
TU471996 lncRNA upstream 173362 54835216 ~ 54836716 (-) True G416408
TU472005 lncRNA upstream 184230 54846084 ~ 54846546 (-) True G416417
TU472006 lncRNA upstream 185504 54847358 ~ 54849988 (-) True G416418
TU472008 lncRNA upstream 188379 54850233 ~ 54850682 (-) True G416419
XM_036977848.1 mRNA downstream 53091 54555051 ~ 54587190 (-) False ssbp3b
XM_036977849.1 mRNA downstream 53091 54555051 ~ 54587190 (-) False ssbp3b
XM_036977850.1 mRNA downstream 53091 54555051 ~ 54587190 (-) False ssbp3b
XM_036977851.1 mRNA downstream 53091 54555051 ~ 54587190 (-) True ssbp3b
XM_021603349.2 mRNA downstream 96477 54378123 ~ 54543804 (-) True LOC110524050
XM_021603365.2 mRNA upstream 55472 54717326 ~ 54770286 (-) False slc44a5b
XM_036977856.1 mRNA upstream 55472 54717326 ~ 54770286 (-) False slc44a5b
XM_021603366.2 mRNA upstream 57653 54719507 ~ 54770285 (-) False slc44a5b
XM_036977855.1 mRNA upstream 57653 54719507 ~ 54770286 (-) True slc44a5b
XM_021603376.2 mRNA upstream 237242 54899096 ~ 54924751 (-) False LOC110524065
TU471641 other downstream 254053 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 634608 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 747375 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1021417 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1021522 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 479461 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 946981 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 2046944 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 2048426 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 2172172 56834026 ~ 56834595 (-) True G418830

Expression Profile


XM_021603359.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XM_021603359.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021603359.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.