RNA id: XM_021603360.2


Basic Information

Item Value
RNA id XM_021603360.2
length 2079
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110524059
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54702112 ~ 54716209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGAAGGAGACAAAAGGAATAATCTTACCACAAATTTAACTACTCTTGAAAGGGATATTGACATTTGAAACTGTCAGGAAGTTGCTGTTGGGTTGTTTAGCGCACTACCGataattacattttaaatgcaCTGGAAAAGTGAACAGAAATTAGAATGTTGCAATGTTGTTGACGAGAATGAAAACGTTTCCAACGATGGGGGCACACCCGTGGAAGTTTTGGGTGACGATTCCTGCTCCCTCGGCTCATCCTCCCCGTCGCTACAGGCGATGGTGTCTGCACCTCTGTTGGGTAGAACTGTTTGTGCAAGTTGCAGTGAGGACATTTTGGATAAATACTTGCTGAAGgTTAACGACTTGTGCTGGCATGTGCGTTGTCTCTCCTGTAGCGTGTGCCAAACATCGCTTGGCAGTCATACAAGTTGTTACATCAAAGAAAAAGAGGTCTTTTGCAAATTGGACTACTTTAGAAGATATGGAACATGGTGCGCGTGCTGCGGTCGAAATATCCACTCTACAGACTGGGTCCGCCGGGCGAAGGGCAACGTGTACCACCTGGCGTGTTTCGCCTGTTTCTCCTGTAAGAGGCAGCTGTCCACGGGGGAAGAGTTTGCCCTGGTGGAGGAGAAGGTGCTGTGTCGTGTCCACTACGACTGTATGCTGGACAACCTGAAACGCGCCGTGGAGAAAGGAAGTGGTGTGAACCTAGAGGGGGCGATGCCAACAGAACAGGAAGTGAATCAGCCTAAGCCGTCGAAAAGAGCGCGCACCAGCTTCACCGCTGACCAATTACAGGTAATGCAGGCCCAGTTTGCCCAGGACAACAACCCAGATGCCCAGACCCTGCAGAAGCTGGCAGAGCAGACAGGCCTGAGTAGGAGAGTCATACAGGTTTGGTTCCAGAACTGTAGAGCGCGCCATAAGAAGCATGTGAGCCCCAACCACTCCTCAGccactcccctgtcctccctGCAGCCCGGTCGCCACTCCCAGCCCACCCCGGCCCCAGAAGAGCTGCAGTACACAGCCTACGGCACCCCGGAGGGCTCCATGCTCACCGCGCTGCACTCCTACATCGATGTGCACTCCCCTCAGTCTATGCTGTTCCATCCCCTGCTGCCCCCCCACGCCATGACCTCCCTTCCTGTGACCCACGCCTgagccagacaaacacacacacacacgcacacacaatttGCCAGAGCCTCACACACCACCAGGGATCTTCAGCCTAGTAGGTTTATTCTTAACAAATTAATTAAGTGTAACATTTCATGTGACTTGTCAGTAAGGGTCATGTTAGAAGCCTTGTCTGTCTGAAAGGGGCCCCCATACACACTTAAGTTGTACAATTGATGTTCAATGCATTTGTCACAATGGTTGATAACAGCAGTTTATTTTTTCACTTCCAAAAATATACACACAAGTACAATGGTTGAGTAAACACGTTTGTGCGTACAAACTATTTTTTGTACAATACAAATATGAGTTGCATCACAACCATTGTGTCATACTTTATACATCAGTTGGATAACTGTAGTGTGTACAGAGCTTTGTGTATTTATTGCAAAGTGCCACAGTTTGATGCCGATCTTTTAtctaagggggtggggggggggactagATTGCCATTGACAAACCATTGTGAAGTTTATCTTAAACGATGAATTATTTGTACATCAGTATTTTAAATTATTGTTGTTTCATGTATTTATTGTATGTGATTAAGAAAATAAATGTCTATTGACAAAATGACTTTATAGAATAGTGACCAGTTTCGActcacaacaacaaccacaatgaAGCCGAGCTAAACAGGAAAAATGGACTCAACGTCATGAATGTAATGTACATTTTTTGAGATTGATACATGGCATGGAAGGCCCCTCCATATACTCAATAAGGCACCAATGGTTGATTAGCATCAATTTCTaaaaaaacaattttttaaaGAAGCAAACCCCAATCAAATATTCGTGTTATTAAATAATATGCTTATATACAGTCCAAACATTCATACATACTCACTGTTATTTAAAATAAAGCATAGATATGCAAAATtctttacataaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471519 lncRNA upstream 13230 54688582 ~ 54688882 (+) True G416005
TU471438 lncRNA upstream 88970 54590074 ~ 54613142 (+) False G415946
TU471452 lncRNA upstream 88970 54590074 ~ 54613142 (+) False G415946
TU471454 lncRNA upstream 88970 54610741 ~ 54613142 (+) True G415946
TU471401 lncRNA upstream 145776 54555076 ~ 54556336 (+) True G415914
TU471947 lncRNA downstream 119404 54835613 ~ 54837792 (+) True G416362
TU471955 lncRNA downstream 123153 54839362 ~ 54839580 (+) True G416367
TU471965 lncRNA downstream 142821 54859030 ~ 54859350 (+) True G416377
TU471966 lncRNA downstream 143232 54859441 ~ 54859821 (+) True G416378
TU471970 lncRNA downstream 143938 54860147 ~ 54860415 (+) True G416382
LOC118964715 mRNA upstream 65175 54623690 ~ 54636937 (+) True LOC118964715
XM_021603358.2 mRNA upstream 81775 54617524 ~ 54620337 (+) True fpgt
XM_036977852.1 mRNA upstream 88969 54595497 ~ 54613143 (+) True LOC110524055
XM_036977854.1 mRNA upstream 106780 54589958 ~ 54595332 (+) True LOC118964620
XM_036979051.1 mRNA upstream 147723 54552355 ~ 54554389 (+) True LOC110522872
XM_021603368.2 mRNA downstream 102404 54818613 ~ 54833842 (+) False LOC110524062
XM_021603369.2 mRNA downstream 102404 54818613 ~ 54833842 (+) False LOC110524062
XM_021603370.2 mRNA downstream 102404 54818613 ~ 54833842 (+) True LOC110524062
XM_021603374.2 mRNA downstream 152162 54868371 ~ 54876340 (+) False LOC110524063
XM_021603372.2 mRNA downstream 153476 54869685 ~ 54876340 (+) False LOC110524063
TU471439 other upstream 88970 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 88970 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 351497 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 371632 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 372332 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 608436 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1901681 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2009976 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 2207715 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 2227629 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile