RNA id: XM_021603374.2



Basic Information


Item Value
RNA id XM_021603374.2
length 1059
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110524063
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54868248 ~ 54876340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agcaagggaagtttgcaacgtaagccctcagccctcgtttttaatggagtttgcgagtgtacaattacGTTCACTTCGGGCCTGAAAGGAAAGTCTGCCAAAACTTTAAAcctcaacatacaagtCTTCCgatggctgaaaacacaatcgtCGCGGGATGAAGGAATTTCTGCTCTGCAAGCGTAAACTCCTCAGACGTCAAGacatcatcagaagtgtccagtgttgccaactaattttcaggGTAGAAACATGAACCAAGAAAAATTAGCAAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCTGCACGTAGGAAGAAGAAGGTCGTACACAGGACGGCAACAGCCGACGACAAAAAACTTCAGAGTTCGTTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAGGAGGTAAACATGATCAAGGATGACGGCTCAGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACTTTCGCTATCACCGGCCATGCCGAGACCAAGCAGCTCACGGAGATGCTGCCGGGCATCCTCAGCCAGCTGGGCGCCGACAGCCTCACCAGCCTGCGCAAACTAGCAGAGCAGTTCCCTCGACAAGTGCTTGACAGCAAAACCCCTAAAGCAGAAGATATTGAAGAAGAAGACGACGATGTCCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCTTGAGACCCCATACAAGGATTGGAACTGCAATTAAGAAACTAAGGCGACTTCTCTGATGTTTTAACTTCTAGCTATGAAGACCTATCATTTCAAACACTATCCCGTCATCCAGAGACTTGTGTATTTTGAAATGTCCCAAGGATGCAGTCCTTATCAGACTTGCTTGCTCACTTAAACTCTCAACACATTGGTCAACGGTTCAGTACTTTTCACCACATTGTTAGTCTCGAACAGGATTGCGGTGGTCATTTTAATTAAAGCTAGTCTTAAAAATAATTTTGTTTTTACGAAACAAAATAAAGGTGATTAACATTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU471972 lncRNA upstream 6179 54861751 ~ 54862192 (+) True G416384
TU471970 lncRNA upstream 7956 54860147 ~ 54860415 (+) True G416382
TU471966 lncRNA upstream 8550 54859441 ~ 54859821 (+) True G416378
TU471965 lncRNA upstream 9021 54859030 ~ 54859350 (+) True G416377
TU471955 lncRNA upstream 28791 54839362 ~ 54839580 (+) True G416367
TU472038 lncRNA downstream 12960 54889300 ~ 54889572 (+) True G416438
TU472041 lncRNA downstream 17793 54894133 ~ 54894347 (+) True G416441
TU472138 lncRNA downstream 75514 54951854 ~ 54952065 (+) True G416529
TU472176 lncRNA downstream 98319 54974659 ~ 55018194 (+) True G416560
TU472206 lncRNA downstream 144974 55021314 ~ 55021526 (+) True G416589
XM_021603368.2 mRNA upstream 34529 54818613 ~ 54833842 (+) False LOC110524062
XM_021603369.2 mRNA upstream 34529 54818613 ~ 54833842 (+) False LOC110524062
XM_021603370.2 mRNA upstream 34529 54818613 ~ 54833842 (+) True LOC110524062
XM_021603360.2 mRNA upstream 152162 54702112 ~ 54716209 (+) False LOC110524059
XM_021603362.2 mRNA upstream 152162 54702112 ~ 54716209 (+) False LOC110524059
XM_036977859.1 mRNA downstream 523 54876863 ~ 54885966 (+) False LOC110522972
XM_036977858.1 mRNA downstream 523 54876863 ~ 54888523 (+) True LOC110522972
XM_021603378.2 mRNA downstream 49993 54926333 ~ 54935194 (+) True LOC110524066
XM_021601325.2 mRNA downstream 78907 54955247 ~ 54957290 (+) True LOC110522873
XM_021603379.2 mRNA downstream 155862 55032202 ~ 55041553 (+) False LOC110524067
TU471439 other upstream 255229 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 255229 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 517756 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 537891 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 538591 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 448305 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1741550 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1849845 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 2047584 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 2067498 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile