RNA id: XR_005051585.1


Basic Information

Item Value
RNA id XR_005051585.1
length 1880
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118964528
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54997686 ~ 55005447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGCAGGACAAGGATGCtcctgactttcaagaatgcctgaattgctacaccttgcttttctggttggctgACAAGTTCCACCATATTAGTAAATGATTGCATTCTATGCATGCTGGCTTTCACATGCTACCTGAGGCatgaaacagataggtgggagggcacACAGGCTGTCGCCAATTTATTAATGCGCAATTTGACTAAATGGCtaatggaaacacttcaaccTCTACATTTTTATTCGACACTAGGTTTTTTTTGCGTaaaagtattatttttttaaatgtgtgacttcattacatccagctgtttTTGTCGACACCAGATAGTTGAATGGAAATGCAACCTTGCAGAGCGAGCTGGGAGTGTGAGCGAGAGGGAGCTGATCCACGCAGATTGCGGAAAATGGGCTCTAGCAAAGAAGTGGCTCGCCTGTGGAAGGAAGGCGTCGGGGGATGGCAGCCAATGGCAAGCGACCAGCCATGGTGACTCAGAATCTGTCTCTTATGgaGAGGACGAGGATAACTGCTGGTGCTGTGGGATTGTCAGGCCCTGCCAGACCCTGCCAACAGCCCTTAATTCCACATTAATGCAGTCTAAATGAAGTGTCAGTGGAAGATGGATCTGTGGAGGGCAGTGGCTTGATGAGGGTTGTCTGCAGAGTGGGTGGACCCGCCTGGGTGGACACCTGGTTACCCGCCGCAAGCTCCACAATGCCCCCAAGGGCCCCCTACATCTAGAGGGTCTGAAGGGCAGGCTGGGGAGCAACCTGTCACACTTctggggtgtgtgtggggtggggggggggggggtgcatgtgtgtgcaaatgtgtgtgtacagtgcacgtgcatgtgtgcgtgtctgtgtacagtatgtgtgcgtgtgtgtgtctgcccctATCCACGACCAATTAATCAAAATTACACCAAAGGTTTCACTAATTTAGAGAGCCCTAAACACCCTTTCCAAGAAAAGCGTAAACATTATGCATGCTGAAAAGGGGAAGGAGAAATCCTGTCTCTTTTCATTCTGACAAATCTCATAACATTTGCCAGACTTCTTTTGATGAAGGTACGTTTTAGTGTTGTCTGTCAGTAAGTAGCATTGCGAGGACAATACTGCCGGTGGGAGACTTTTACAGGCCTCTTAAATACAACCATCcctcctactgtactgtacatatctataGTAAAAACCCCTTTTACTCCattacatttttaaatggaaaaatCCTTTTCACTCCTTGTAAGTGTAAACCCACCGTGTATGGAGTAATATTCAAAATGCAAAGCCTGAGTATGACATGGCTGTATGGTGGTTGTATAAACCAACTTGGCAGGTCCGTgtatctgcatgtgtgtgtgtgttgtatgacCTACATATGTTTGGACATATACATATTTTCACCCTTTATTTTACcgggtaagttgactgagaacacattctcatttacagcaacgacctggggaatagtttcaGGGGAGgacgaatgagccaattggaagcccGCGTCACACAAAAACGTTACTCCCAAGTGTCAACCATGTGTTAAGAGAGCAGATTGTATACGTTTATATCATTACGCCTACGTCAGAGACGCACAACCTTTTGTATCTCCCTGGCACTAAATAGATCCATTGGTGACTGACCATAGATTTCCCACGCTTCACCTTCCAGGAGGCAGGTATCCCTAGATGTTAGAGAGTCGAGCTAACAAACAGGAGACTGTAAAAATCTGGTgggaagtgagctggcaaccaGGGCGCCCAGTGTGGTAACCCCCCGCACCTCTCCAAAAAACCTGTATATGTATGCGTTCGTTTCGGAGGGTTTATAAGTGGAAGTCAAATTTCAGTTGGACCTTGTTAGCATTTGACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472300 lncRNA downstream 16443 54980433 ~ 54981243 (-) True G416673
TU472161 lncRNA downstream 33983 54963490 ~ 54963703 (-) True G416545
TU472160 lncRNA downstream 34395 54963054 ~ 54963291 (-) True G416544
TU472139 lncRNA downstream 45248 54951507 ~ 54952438 (-) True G416530
TU472130 lncRNA downstream 59444 54937276 ~ 54938242 (-) True G416521
TU472323 lncRNA upstream 12908 55018355 ~ 55018559 (-) True G416696
TU472336 lncRNA upstream 37384 55042831 ~ 55043076 (-) True G416709
TU472339 lncRNA upstream 40542 55045989 ~ 55067110 (-) True G416712
TU472303 lncRNA upstream 66658 55072105 ~ 55073852 (-) True LOC110524069
TU472361 lncRNA upstream 89496 55094943 ~ 55097297 (-) True G416733
XM_036977860.1 mRNA downstream 72934 54899096 ~ 54924752 (-) True LOC110524065
XM_021603376.2 mRNA downstream 72935 54899096 ~ 54924751 (-) False LOC110524065
XM_021603365.2 mRNA downstream 227400 54717326 ~ 54770286 (-) False slc44a5b
XM_036977856.1 mRNA downstream 227400 54717326 ~ 54770286 (-) False slc44a5b
XM_036977855.1 mRNA downstream 227400 54719507 ~ 54770286 (-) True slc44a5b
XM_021603380.2 mRNA upstream 46277 55051724 ~ 55071938 (-) True LOC110524068
XM_021603381.2 mRNA upstream 66638 55072085 ~ 55073951 (-) False LOC110524069
XM_036977864.1 mRNA upstream 97512 55102959 ~ 55122187 (-) False si:ch211-221n20.8
XM_036977866.1 mRNA upstream 97512 55102959 ~ 55122188 (-) False si:ch211-221n20.8
XM_036977865.1 mRNA upstream 97512 55102959 ~ 55122189 (-) False si:ch211-221n20.8
TU471641 other downstream 611458 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 992013 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1104780 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1378822 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1378927 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 135868 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 603388 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1703351 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1704833 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1828579 56834026 ~ 56834595 (-) True G418830

Expression Profile