RNA id: XM_036977861.1


Basic Information

Item Value
RNA id XM_036977861.1
length 2523
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC110524067
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55032202 ~ 55041553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATGGCAGTACTCTGGATTCTTCCACACTCCGGAGAACGCCAGGAGAGCGAGAGCACCGCGCGCAGAAAACGGACTACTGTATTCCTGAAAGAAGACAGCGTTGAGGAGTTTGGACACTAGTTTAAAAAAATGAGTATACAGGACTAAACAGCACGGAATTGATAAGTAAACACACGAGGTGATACTTTGAAAGCTAATATTCCATTTGAAAACAGCCGGACATAGGCTACAACACTCAAAGACCCCAGGAGCGGCGTGTGCAAGAGTTGACGGGAGCCATGCAGCACTACGGAGTGAATGGATATTCTCTCCACGCCATGAACTCGCTAAGCGCCATGTACAACCTCCACCAGCAGGCGGCGCAGCAGGCCCAGCACGCCCCTGACTACCGGCCATCAGTGCACGCGCTCACCCTGGCAGAGAGGCTGGCTGGCTGCACATTTCAAGACATCATCCTCGAGGCCCGGTATGGCTCCCAGCACCGAAAGCAGCGGCGCAGTCGCACAGCCTTCACTGCCCAGCAGCTGGAGGCCCTGGAAAAGACCTTCCAGAAGACCCACTACCCTGACGTGGTGATGCGTGAGCGCCTGGCCATGTGCACCAACCTGCCAGAGGCCCGTGTACAGGTGTGGTTCAAAAATCGCCGCGCCAAGTTCCGCAAGAAGCAGCGCAGCCTGCAGAAGGAGCAGCTCCAGAAACAGAAGGAGGCCAACGGAGAGGGGGGTGACAAGGAGGATGTCAAGACCAAAGACACCTCCACCGCAAGTGTGCCCTCCACCCAgagccctccacctccctcctcctccacttcctcctccctcttggaGTCAATGCAGCCCCAGCCTGCAGAGATGAACGTGGAGGTGAACGTCACCTCCCCGGAGCCCTCAGACAGCGAGTCGGCCGCCGAAGACAACGgtgagggagaggaagagctGAGGAGGGAGAGGCTGCAGGAGGAAACGCAGCAGCAGCTTCAGGGGGAGATGCAGCAGAGGGATGCAGGGCTGCAGCCGGGAGGCGGCTCTCCGTCCTGCAAACGCCTCAGCCCCACACCAGACTCTCCCCTGggctcaccctccctcccttcttccagTGGTGGCATGGGCAGCAGTGGTCTGTCCCAGGGCTCCTACGCCTCGTCCCCCCTCAGCCTCTTCCGCCTGCAGGAGCAGTTCCGCCAGCACATGGCCGCCACCAACAACATGGTCCACTACCCCTCCTTCGACATGGGTACCCCCTCCTCCCTGCCCTACCTAGGCATGAACGTCAACATGCCCTCCCCCCTGAGCTCCCTGCCCTGCCAATCATACTACCAGTCCATGTCCCAGGCATCTCTGTCCCAGGCCCAGCAGGTGTGGAACAACCCTCTGGCAGGTCTCCAGGCTCCTCCGGGCAGCATGCCCAGCCTCAACAGCAAGACCACCAGCATCGAGAACCTGCGTCTGAGGGCCAAGCAGCACGCAGCCTCCCTGGGCCTGGACACACTACCCAACTGACCAGACCTGACCCCCCCCCAGGGCAGCTACCAAGGATGCAGCCAGACATTACGACCCCTTCTGCTGACATCTTCACTGACTGGACATTATAGACACTGCATCAGTTTTGGACACTGGGACTGGACATTAGATCAATACACTACTGGACATTGCTTATTTGACCCCCTCGCAGGTTAGATGCATAGACCCAGTCCAATCGCACTACTGCTACCCACCAAACCATGTGGATCAGAGAACTCAAAGCTACACTCCTATATCACAAAGCCGTCATCTCATACCGGGGAAAATGCATGGCGGTTAACAGTATCTGATGACCTCAACACTAGAGCTGGGGAGAGTGACAGTAACATTAAAGATGAGCTTTGCATGCATCCCGAGACAAGGATTACAACTGCACAAAGATTGAACCAAGATTCCAGCCTCAGATCAAACCCATTCAAAGATTTACAACAGCACAGACTGGCCCTACAAATCCCACAATGCCCTGCACCTGGCAGATGGACAGTACTTCCTGTTAAAGAGCTACATCCCACCTGCAAGAATTTATTCCACATTGTACTGTAAATATTCCTCCTCGTTTGTTCCCATCCCATCTGCTTGGTTCGGGAGTATAAATCGGTGTCTCCTTTTGTGTCGAGGACTTAAACAGGAAACATTCAAGCTATTTTTGAATTGTTCCATTGTGGCTTTATGCAAAGGACCTACAGTAGAATGAGCCAATACCTGCTGGGGTAAAGATTATAGTCTACGGTGGGAACAGAGCGACGTTCAAATATGAATCTGTTTAATCTAGCTATGTTATGTTCGCCTGGGTGCCAGGTTGTTTCTGCATATGCGTTTAAGAGCGCCACATCTTTACGAAGTCAAGACggtgacaaaaaaaatatatggtACCCAGGCCAATGCTGTATGTATTTTATCATTGTAGAGCCCAGACATGTATTTCTCAATTGTTTACTTAAAATGTGAGTAATTTATCTGTTAAAATGCAAGGGAATAAACCACATGTATGAAGATCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472206 lncRNA upstream 10676 55021314 ~ 55021526 (+) True G416589
TU472176 lncRNA upstream 14008 54974659 ~ 55018194 (+) True G416560
TU472138 lncRNA upstream 80137 54951854 ~ 54952065 (+) True G416529
TU472041 lncRNA upstream 137855 54894133 ~ 54894347 (+) True G416441
TU472038 lncRNA upstream 142630 54889300 ~ 54889572 (+) True G416438
TU472242 lncRNA downstream 30532 55072085 ~ 55073748 (+) True G416616
TU472428 lncRNA downstream 137005 55178558 ~ 55178825 (+) True G416789
TU472429 lncRNA downstream 137384 55178937 ~ 55179196 (+) True G416790
TU472445 lncRNA downstream 138939 55180492 ~ 55182626 (+) True G416791
TU472478 lncRNA downstream 176201 55217754 ~ 55218712 (+) True G416821
XM_021601325.2 mRNA upstream 74912 54955247 ~ 54957290 (+) True LOC110522873
XM_021603378.2 mRNA upstream 97008 54926333 ~ 54935194 (+) True LOC110524066
XM_036977858.1 mRNA upstream 143679 54876863 ~ 54888523 (+) True LOC110522972
XM_036977859.1 mRNA upstream 146236 54876863 ~ 54885966 (+) False LOC110522972
XM_021603371.2 mRNA upstream 155862 54870037 ~ 54876340 (+) False LOC110524063
XM_036977863.1 mRNA downstream 41346 55082899 ~ 55097257 (+) True LOC118964621
XM_021603387.2 mRNA downstream 196314 55237867 ~ 55239661 (+) True LOC110524073
XM_021603388.2 mRNA downstream 208324 55249877 ~ 55255113 (+) False LOC110524074
XM_036977879.1 mRNA downstream 216121 55257674 ~ 55268360 (+) False LOC110524076
XM_021603389.2 mRNA downstream 216966 55258519 ~ 55268360 (+) False LOC110524076
TU471439 other upstream 419060 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 419060 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 681587 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 701722 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 702422 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 283092 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1576337 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1684632 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 1882371 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 1902285 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile