RNA id: XM_036977863.1


Basic Information

Item Value
RNA id XM_036977863.1
length 4267
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC118964621
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55082899 ~ 55097257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTGTCGTGTTTTCTGTTCGAAACGATGAGAAGCCGACAGGCAAGCGACTTCTGGCCCGCCGGCTCCTCCTCTTCCAAGCTGTCAAGTACAGCAACCTTAACGTAGCTGTCCATGTAGTAACTGTATCAGATTGTAAAAGTGTTACGAAGAGCAAAAACAAAGTGGTTGGCTCATTTATTACCCCGTTCTGCCGATAGGTTAGTGGTTGGAAATGTATTGGGCTGCATGGTTGCAACTGGCCAAGTTATCTTTCAAATTGGAAGTGGTTTGACAGCTCGCTGCCTATGCCTTGCCCACGAAGGCGCCCCAACAACGGAacatGTCGCGACGGAGTATGAGGCTGGTTTTAGGGGGATACTACAACCAATCCTCCGAGGATGACGAATCCTCCTCAGTTTCCTACAGGGAGAGCCCTGTGAGgGTCTTTaccaagaggaagagagggggtcaTAAAGTGGCCTCCACTTGTACCTCCAGCCGGGCCAACAGCGTGGCTAGCACCACTAGCACGATGGAGCCACTCAGTAATGCTGAGGACAACATTGGGGTCTCAAGTTTGGTTCAGAGGAGGAAGACCTTCCAGGAGCCTCCCAGTGTGGCTCCAGCACCAGCCCCCAGCCTGAATCTGGCTCCTAGCCCCAGGGGCTTCCCCTCCTGCCAGACCAGCCTTAACCAGGCCCAGAGCCAGagcagcaccatggacagctctgGTTACTCCTCTTCAGAGGCAAGACGTTTCAAAGGATACTCTGGATACACGTCTTTGTACGGACAAAGTGCTAGCGCCAGCCAGAGCTCTGGCGCCAGCAGGAAAAGCTCCAGCTGGACCCCTCCGTTTGTCCCTGCCGGTGTGGGGAAGGCCATTCTAAttgccttcctcctcctcttgacTTTTGGCTGCTGGCACCTTGCCCCCTTAGTATGGTCCACCCTGACTCCGACTATGACCCTGAACCGACCAGTCATCACCCCGACTCCACCCCCTGTCTTCAGTCTGCCTCCCAAGGCTATGGATGAAGCGTCAGTATTCAATTCTGCTTTGGAAGCCAAGATGAACACCATCctgACAGAAATAGAAACACTTAAGAAGAAAGACCACCAGCAGACATTTGTTACCGAGATGGTAGAGAGACTACAGACAGACTTGACAGACGTGAGGACAGACATGAGGAATGTGAGAGTGGACAGTGTGGATCCTTTGGATTGGGAACGTCGTTTGAGCCAGCAGACAGCCGGCTTCTCCAGTCAGGTAGACGACCTCAAGGAGCAACACACACACGTCAGGGGGAGAGTCGCTGCCCTGGAGGACCAGACTGCCACGCTGCAGCAACAGGTTTACTCTGTCCAGAACCAGCCTCCCCCAGAGCCCAGCCCCACCAAAGCCAACGCACACCTGACCACCGAGCTCAAAGAGGCCATGGCCAAATGGCTGCATGAGAATGTGCCCCAGAATGAGCCACGGATAGTGAAAGAGATTGTGAAGGACTGCAGTCCTCCATTGGCTGACAGGATGCCGGACTTTGCCTTAGAGTCCCAAGGTGCCAGCATTGTGAGCACTCGGTGTTCCGAGACGTACCGCACCCGCTCGGCATGTGTGACCTTCCTGGGCATACCTCTCTGGTACTCCTCTGAGAGCCCCCGCACAGTTCTCCAGGGCCAGCCTGCGCAGGCTGGGAAGTGTTGGGCGTTCCACGGTGCGCAGGGCACCTTAGTCATCGCCCTGTCTCATCCCGCGCACATCACCCACGTCACCCTGGAACACCTGCCTGTATCCACCGCCCCCACCGGACGCATCGACAGCGCCCCCAAGGCCTTCTCTGTCTATGGTATGTCCACCGAGACAGAAGACGGCACCTGCCTGGGAACCTTCACTTATGACCAGCATGGAGAGCCAATCCAAACCTTCCAACTGCCCaacCCTACCACGGCCACCTATCGCTATGTGGAGCTGCGCGTTCTGAGTAACTGGGGTCACCTGAAGTACACGTGCGTGTACCGCTTCCGTGTTCACGGACACATGGCCCCATCCTCCACATGAGAAGGGCTCACCGTCCACCATCTACCCCATCCGCAGACCTCAGAGAGGCTACGCTTTCATGTTCCGTCAACATCATGACAGTCTAAATAAATCCCTCTATTTTGCAGAATCAGGGTGGTTTCATACACTGGCTTCTGTCTAGTGCGAGGTTAGAGGTCGTGAGGTTAAAGATCTATAGTGATTTTTTTTGTGCTGACCTGGTGGGAGTAAGGGGATGGGTTTTTCTGAGATTgaagtttgtgtgcgtgtgctttTGAGCATAGATTGTTTGCATTTTGTCTGgccacagcagacagacatttCAGATTGTACCTTGAAGGTGTGTGTATAACAGTCCTGCCTGTGTTACTGGACTCTTATTCAGTTATTTTGTTTGCTTTTATTTGTATCTTATACAACAGTTGAATTATGTTGAGAAAGAACGTTGTTGTGGATGTATATTTTGCAAGTATCAAGATGTATAGTTAATATATTTTATTGCGATAAGGATGTAATGTGGTTGCAAATGATTATTTTCTGTTGCTCTGAATGACTATCAAAGTTTTTGAAGTACCTTGCCAATAGGCATCCTATTGAAAGATGTTTGATATGATTTGAGATGCTTGATATACGTTTCCTCACACAATAATACAGAATAGAAAGAAATAGGCAGGCACACTCCATGAGTATTGTCTTTACTCAAAAACGCATCTTAGTTTTACATGTcttgtcacatttatttatttcaagttACTCTTAACAtttagcctttttttttttttttacaattcaaaTAATTTTGATAGTAGTGAAAGCACATCCAGGCAACTTCCCAGATGCAAGGTACAAATGatagaaaataaatacatatttattttGTCTTGAATAACTCTTTCCTCTCAAAAGCAATGAGGCCATTTCAATGTCAGTGAGTCCAAATGTCAGGTTTTCAACTTCCAAACATTTGTAAATGGTACAAAAGTAACCTACTCATTGCTATTCTATGATTTAAATCATCAGAATGTTTTTAGGAGTCATATGTaacttttttttgtacatttacaGTATTATTGATTTAAACATTTTGCAGTAGTGGTACAGACTAACAAAAGACTGATTGTAAGAAAATACTAATATGAGAAAATAATCATATGATTTGCTCTCAATACCACTTTGAGGTATTTGTTTTGATCTGAAGTTACAACAACAACTCCGGGTCAATTTCTGTTTACTTATTTTCTGTTGAATTGGACAAAGAATGTTTCCGTTAGAAATGCAATTTAAATTCCTGAAATGACTGGCAATATATAAATAATGAATGTGTATGACATCTTTTTCTACTCTTTTTAAAATACCctttttttgttgtgttactttcATGCAATAGTTATTTGAAAGCGAGGCATCTTAACAGGTATTTCAGATGTTTAGAATTGGGTTTTCAAAAAAATATACTTTTAGTTAGGTGTGTGTTCAATTGGCACAAAACAGAatctttgtttatttttttttaaacagtaggATTAAAAAAATGTTGATATTACCTGAACTTGTTCCATAAAAAAATGCTCAATTATTCTGTTGCCTAACATTTTTGCTACATTGTGCTCAACAGAACACGGCCCAGGTGAACATAATAGTCATATTTATTTAATTAGGgttattgtgttttttttatttatctttaATCAGTGGTCCAACTTATTTCATTGATTTGTTATTGATGATGCATCAATATTGTAGCATGTAATTAATGCAGGCTAATATAATGAGACAGCAGAAGTCTTCCCTTCGACTGTTATAGCCGGGGGTGCTGGCCTGTGGTAGTATAAGGTTAAGAGTGACATTGAGGTGACTAATGAAACCTAACTTCTGCTTTTACCTCCTGATTATTTTCACTGCAATCGCTCAGCAATTCGATGCATTCATTgattttacatatatatatatatatatatgaagatTTTATTTTGTTAAAGTATAGCTAAGTACTATGGTGCTTAGGTTTTATACACACCATAGCCTTAAATCACATGGAGTTATGTCACTATACTCTCTGaaatgtgcacttgttcactttcTATCAGGGATTGCTTTTAAAAAAAGGGTCATCTGGAATtgttacatccatttttggactttaaAATGAACTAGATGGTCCGGTTAACCATAATGATAGATTTGTTTCACTGATGGGGTTGTGCTTGTGTGTcgttatttttaataaatttgctaaatgtTCTATa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472242 lncRNA upstream 9151 55072085 ~ 55073748 (+) True G416616
TU472206 lncRNA upstream 61373 55021314 ~ 55021526 (+) True G416589
TU472176 lncRNA upstream 64705 54974659 ~ 55018194 (+) True G416560
TU472138 lncRNA upstream 130834 54951854 ~ 54952065 (+) True G416529
TU472041 lncRNA upstream 188552 54894133 ~ 54894347 (+) True G416441
TU472428 lncRNA downstream 81301 55178558 ~ 55178825 (+) True G416789
TU472429 lncRNA downstream 81680 55178937 ~ 55179196 (+) True G416790
TU472445 lncRNA downstream 83235 55180492 ~ 55182626 (+) True G416791
TU472478 lncRNA downstream 120497 55217754 ~ 55218712 (+) True G416821
TU472500 lncRNA downstream 145241 55242498 ~ 55255101 (+) True LOC110524074
XM_021603379.2 mRNA upstream 41346 55032202 ~ 55041553 (+) False LOC110524067
XM_036977861.1 mRNA upstream 41346 55032202 ~ 55041553 (+) True LOC110524067
XM_021601325.2 mRNA upstream 125609 54955247 ~ 54957290 (+) True LOC110522873
XM_021603378.2 mRNA upstream 147705 54926333 ~ 54935194 (+) True LOC110524066
XM_036977858.1 mRNA upstream 194376 54876863 ~ 54888523 (+) True LOC110522972
XM_021603387.2 mRNA downstream 140610 55237867 ~ 55239661 (+) True LOC110524073
XM_021603388.2 mRNA downstream 152620 55249877 ~ 55255113 (+) False LOC110524074
XM_036977879.1 mRNA downstream 160417 55257674 ~ 55268360 (+) False LOC110524076
XM_021603389.2 mRNA downstream 161262 55258519 ~ 55268360 (+) False LOC110524076
XM_021603391.2 mRNA downstream 390563 55487820 ~ 55499695 (+) False LOC110524077
TU471439 other upstream 469757 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 469757 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 732284 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 752419 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 753119 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 227388 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1520633 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1628928 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 1826667 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 1846581 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile