RNA id: XR_005051761.1


Basic Information

Item Value
RNA id XR_005051761.1
length 5144
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC110524071
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55123617 ~ 55181458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacatatggaatcatgtagtaactaaaaaagtgttcaacaaatcaaaatatattttatatttgagattctacaaagtagcccccctttgtcttgatgacagctttgcacccttttgactggtataaatatttgttttaaaaaaatacacCCCAGACGCGTTCAAAACCTTGGGTTGCGACCCACCAGTTGAGAATTGCTGGTGTAGTGTACCATGGCAAGCTTATGTTTGTGTAAGGTCTTTCTGGATTCTATCTGAACTGTTTATAATAGCAGGCCTATATATATGATATACCATCATAGGAATATGATTTTGTAATATATCTTTGTAAGGGAGTTTAGAATTTTGTTATAGCCATACATTCTAGAtcttgtgttttttgttgttgtcactaATCTAAGTTGATCGTTGTCTTTCTCTATTAGTCGCTATAGTAATAAGGCGTGACCACCCTTGTTTACAATACTGCCTATTCAAGGAGCTTACCAATGTTTTTCACGACTGAAGCAAGGTCCGGGGTGGGGTTTTCCCCCATCCTAACGATAACCATTAGAGTGGAAAATGCAATACTGACCCAAGATCAGattctaggggcaacttcaccctacaccaaAGAGTCGAGGGCTAAATCGGATGCTGCTTTTGTAGAGAACTGTTTCCCATTTCTAAGATTTTATGAGTGGTCTAAATTTGTGCAATTTGTATACAAAAAGCCTAATATTTTCTCTACAGTTTTGCACTTTTTGTAATGAAAAACAATAATAATGATTTACAAAGTCACAAGGAATTGTGTTTTGAACCAAGTCTGTTTGATGGTGGTTGTGCTGGGGAAGATATcctatgtattttatttaaaaaaaaacgtatttcaaGAGTCAGCCACCATCATATTCTCTATCTATGCACTCACTGTTataatggttatgatactggTAAAACGTACAGTTCAACTTTAAAATAAAGTTTGTATATGTCACTTTCTTCCACTTCCACCTATTCCAGGTGGACAGTCTTTAGAAAATAAGGCGTCCATCTGCTATCCCTGTGGTTCTGTAGACccttttttctgtgtgtgtgtagagtggttTTCAGGGTCTCAATTTCTATGCGTTTTTCTGAGGACACTGCACGGACCAGGGGTTTTGACACTCCAAGCCTAATTCCCtcattccctcattccctctgtTGCGTCTTGGCATCCCCTCTCACCTGGCCACTGTTTCGTCTGGCGAGGGCCAACGGTGCCTTTCAGTTGGAGACAAACGCATCGACGCAGCTTGAGGGGAAGCAATGACAACAATGATATTCGCTGGAGCTACGGGTTAATTGAGTGCATAATGTGCTTTTCATCTCATTACCTATTGATTTATATGATGGCCAATCCGGCTCTGCGGGTGCGCCATTGTGCGTATGTTGAGTTTGTCTATCCCCGCCAGATGCGTTCAggacatgcaggttgaaatatcaaaacgaactgtgaacaactatattcattggggacaggtcgaaacttgctattgctagctaatttgttctgggatataaacatttggGTTGTTATTTGAGGTCCTTTTGCTAGATCTTTGtaggatttggagtcacacaaaaTCATGTGTTCTCTACTCCAACAAttcatccacagataaaaggggaaacCTAGTTTGTTTTCAGTTCTCTCTTCTTTTGATTTTGAATTTATATGGCgtttggcaaccaactttaaggtgcattatcGCAACCAACTGATCGGGACAccttcatctttcaatcacccacgtgtgTATATGCTCTTAAAAACCAATGAGATGGGAGATGCGGGACTTGCAGCGGGTCAAGTGTCAAAAATAAGagccaagttctattttagtcgcctggctacgcagacgcgCACGACCCGTTTGGATGAAATTCAACGCTCGTGCACGAAACGCTGTTGGTGTGTTCAGTATTTTAGATGCAATTGTGATAAAATACATAACGTTCGTTCCAGTCTACAGGTTATCTATCCTACGTGGAAATTGTCATTATTCCACCCATACATGCTTACAGAAATGTCCAATTACGCACGACAAAGGACTGGACTGCAATAGGACACTTTGTTTGACGCACAAGCATACACCCACAATTAAAGTTTACACAGGTGTTAGTTTTGATAACATTTTTGCTTCATAAATGTGACTTTGAAGTGCGAGATGCTTGTGCAGACCACAAGTGGCACGCGCAGGCTCCGAAGCAGCAGAGAGCAAATGGTTTTAGATGAATCTTTCTGGGTGGTGGAGAGAGAAGCTTCCCGCTACCTGCCTTAGTGCACGTCATTGTCTGTCTATGATAAAGGATGCATGGAGACTTCTTTAAATAGACAGCAGTTCAGTAAGAGCGGACTGTGAGCTGAGTTGTACTGGCGCATTCATACAGCTTTGAACACTCAAGATGTGCGTCCCTGTCTATTGGATTCTTTTCGCGACATCTTTGGCTCCATCTGTTCTGTCGAGTCTGCACCCAGACTGCGAGTACATCTTTCAGCTGGAGAGGGAGGAGCGGCGTTGTCTTCGGTACATTGCAGAGCAGAACCACAGTACAGTTGAAAACAGTACAGTACTTTTCAACTTCGATGCATTGCAGAACCACAGTATGCTAGGTTGTCTAGCGTACTGGGACTCTGTGGTGTGTTGGCCATATGCTGCGGTTGGGGAGACATTCCACATGGCCTGCCCTGCTGTCTTCTCTCTTTTTGGGAATAACACAGCAGGTTTAGTCAGCCGAAACTGCACTAGCAACGGATGGTCTCAACCCTTCCCCCCGTACCACATAGCCTGTAGTGTGGATGACAACATTCACATtccagagGAGTCATACTTTGCCACGGTGAAGCTGATCTACTCCATTGGCTACGGCACCTCCCTGTTCTTCCTGTCCATCGCTGTGGTGATTCTGCTGCTCTTCAGGAGGCTTCGCTGTGCCAGGAACTATATTCACATCCAGCTGTTTGTCACCTTCATGCTGAAGGCGATGGCTGTGTTCAACAAGGACGCCAAGCTGTTCGCCAGCGAGGACACGGACCACTGCACCCTCTCCACCGCAGCTTGTAAAGCCTCAGTGGTGTTCTGTCACTACTGTGTCATGGCTAACTTCTTCTGGCTCCTGGTGGAGGCCCTCTACCTCAACACCctgctcttctcctccttccaccaCAGCCGCCGCTGCCTCTGGGGCTTTGGCCTGTTGGGCTGGGGTGTACCCGTCGTCTTCATCGTCATATGGATTGGGTCCAGGGTGTATTTTGAGGATACTGAATGCTGGGACATCAACGAGGACTCTCCCTATTGGTGGATCATCAAAGGGCCAATCGTGTTTTCTATTGGGGTCAATTTCATCCTCTTCATGAACATCATCAGAATCCTGATACAGAAACTGAACCCTCGCCTGATCCAGTTCAACAACTCAGATCAGTACAGACGGCTGACTAAGtccactctcctcctcatccctctctttggGAGCCACTACATGGTGTTTAACTTCCTGCCTGACTACTTCCATGTTAGCGTTCGCCTCTGCATCGAGCTCTGCATGGGGTCCTTTCAGGGGTTGATTGTCGCAATTCTCTACTGCTTCCTCAACCAAGAGGTCCAGAAGGAGATCCATATGAGGTGGCTGAGGTGGCAGGATAACAGCTACGGTGTGGTACTGCCCGGTGCCAAGGGTAGTCAGATGGACACACCGTTCTAGTGCTCttcatccacctctcctcttcctctccaacctCTGTGTTTTTAATGAGTGTCTTTCGTCGAGGGGTTGGAATAAAGCGGAAGACAAGATTCCATTGGATATCTGTTTACATTGGACAATAAAGGACCACCATTGAGCTCATCCATTGTGTCCAGCTCGAGTTGAACTGTTTGGCGCATTGTGaaattctcctcctcctcctcttccactcagcATCATCTACGGTTTTGTTACATTGAAGGACAATGGAAGTCTATCTCTgtgtagctctggtccagggcctTACCTTACGTTCTCTGTGGTACTACACCACGTTTTGATGTGTTTTTAGCAAGTCAATATGATTGACCTTCTAATGGAAAATAGATGGTTTTATGTATTAAACGTGCCCCCTGTTTTTCAGGTTTTATTCGAATATTATCTCATGATGTGTGTTGCATTCTGTGTTTTAGTGcctttttgtttgtgtgtttctctctttttgtgtttctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcgtgtgccaTTGCTCCAATGCCATAGATTCTGTATGTAGTATTAGGTCCCCTTGAGGTCCTTTGATATGGCTTTTTGTGGCTATTGATCATAAGCAGGAGAAACACACTGCAGGATAGAAATTCATTTGCCTCTAGCTGTGAAATGGGGCCATTTCTACTATGAAAATAAATATGGCTACACGTGCAATGCAGATACCATGCCAACTGCATTGtgtgctgatttttttttttttttctacttaGGGTCAAATGATGTTTGAATAAAGCTGTGTGCTCTAACGTAGGCTGAATGTGAGGTATAATGAAACAGAATTTTAAACAGAAAATGTGGTGTCTCTTGAAATAAAGCTACATTTATACTTGAACAGGCTACTGTATTTGCAAGGATCGATGGTGTCTGCTAAGAGTATCAATCTCACTGCCTTCAAGTGGGGATTCGTATTGCAAGACAATTTACGACGATTCTACAACCTATCTGAAGTGAGCTGGGTCTTTCCAGGAAATGAGTGCCTTTTAGCATCCCTTTATGTTAAGTAAAAAATGTttaccaatattgaattttaaaagcctgttacaTTGATTGAAGTGCCCTTTACTATAAACCACAGTTTtctgaagcttgcattcaattcaGGCTTTAGTTTAGTTTCACTTGCACTTGTTCTAAatgctaacgttttagcatttgtggcacaaatcccatccAAGTCCTGGTACCGACATTAGCATTTTTTGCGCATCATATCCAAATCATCCAAAAGTATCTAAAATTGATAGTGAAGCTCCACAAAGTCACTTCTAGAGCGATTTGAACATGATGTGCAAAGACGTGTGTAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472377 lncRNA downstream 10416 55112757 ~ 55113201 (-) True G416744
TU472373 lncRNA downstream 19417 55103051 ~ 55104200 (-) True si:ch211-221n20.8
TU472361 lncRNA downstream 26320 55094943 ~ 55097297 (-) True G416733
TU472303 lncRNA downstream 49765 55072105 ~ 55073852 (-) True LOC110524069
TU472339 lncRNA downstream 56507 55045989 ~ 55067110 (-) True G416712
TU473108 lncRNA upstream 55630 55237088 ~ 55237467 (-) True G417386
TU473082 lncRNA upstream 66776 55248234 ~ 55250837 (-) True LOC118964623
TU473077 lncRNA upstream 70082 55251540 ~ 55255098 (-) True G417357
TU473119 lncRNA upstream 95305 55276763 ~ 55279968 (-) True G417397
TU473125 lncRNA upstream 114245 55295703 ~ 55301442 (-) True G417401
XM_036977865.1 mRNA downstream 1428 55102959 ~ 55122189 (-) False si:ch211-221n20.8
XM_036977866.1 mRNA downstream 1429 55102959 ~ 55122188 (-) False si:ch211-221n20.8
XM_036977864.1 mRNA downstream 1430 55102959 ~ 55122187 (-) False si:ch211-221n20.8
XM_021603381.2 mRNA downstream 49666 55072085 ~ 55073951 (-) False LOC110524069
XM_021603380.2 mRNA downstream 51679 55051724 ~ 55071938 (-) True LOC110524068
XM_036977867.1 mRNA upstream 1156 55182614 ~ 55232811 (-) False LOC110524072
XM_021603385.2 mRNA upstream 1156 55182614 ~ 55236556 (-) False LOC110524072
XM_021603384.2 mRNA upstream 1156 55182614 ~ 55236572 (-) False LOC110524072
XM_021603386.2 mRNA upstream 1156 55182614 ~ 55236572 (-) True LOC110524072
XR_005051764.1 mRNA upstream 66675 55248133 ~ 55249963 (-) False LOC118964623
TU471641 other downstream 737389 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 1117944 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1230711 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1504753 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1504858 53617683 ~ 53618759 (-) False G415256
TU473281 other upstream 427377 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1527340 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1528822 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1652568 56834026 ~ 56834595 (-) True G418830
TU475541 other upstream 2429601 57611059 ~ 57611567 (-) True G419603

Expression Profile