RNA id: XM_021603385.2


Basic Information

Item Value
RNA id XM_021603385.2
length 5654
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110524072
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55182614 ~ 55236572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGTGGTTTAGCTACTTGTCAATCCAGTTATTGTTTCCGCCCCACATAGCAAGGTTGCGTACTTTCTGGATTTTCATGGATCGCCAAGTTTAAAGCTGTTTATGACCCGGTGAACTGGTTGCCGGGGAGCTAGTCTGACCATGGCCGCCGGTGAGGCTTTGGGGGAGAGCCAGCTTCGGAGGATTATCAGAGATCTGCATGATGCTGTTGCTGAGCTCACTAAAGAGTACAGGGAGAATGGGGAGCCAATCACGGATGATAGTCCCAATCTGCACAAATTATCCTACAAACTGGAGTACCTGCTGCAGTTTGACCAGAAGGAGAAGACAACATTTCTTGGCACCAGAAAAGACTACTGGGATTATTTCAGCGACTGTCTGGCCAAGATCAAAGGCGCCAACGATGGTATCCGCTTTGTCAAATCCATCCCAGAGCTGAAGACATCTCTGGGGAAGGGCAGGGCTTTCATTCGCTACTCCCTGGTGCACCAACGACTGGCCGACACTCTGCAGCAGTGTCTGATGAACCAAAGGGTAACCAGTGACTGGTACTATACTCGCAGCCCCTTGCTGAAATCTCACCTCGGTGTTGACATCATAAGTCACCTGTATGAGCTCAACGAGGTCCAGTTTGACGTGGCCTCCAGGGGTCATGACCTTGACTCGTCTTGGCCCACCTTTGCAAGGAAGACACTGGGCACGCCCAACTCACCTGGCCACATGTGGAAACCACCCAGTCGCAGCTCTAGCATCAACAGTCTGGCCAGCACCTACTCACAGCAGGCTCATGAGTTCCTTGGCAGCCCAGACAATGGCCCAAGCATGCTGAGCGAGTTGAACGAGTTGTTGCCTTCCAGCGTAGAGGTGGGTATGTTGGACGAGCTCCGCCTGGAGCTGGACCAGTCGGAGCTGAAGCAGCGCGAGCTCCTGGACAGGGTACAGCAGATGGGGGAGGAGGGTGCTGAGCTCAGACGTGTGGTGGTGGAGCTACAGAGGCAGCTGGACGTGTCACTGACCGCCCAGGAGAAACAGCAGGGAATGCAAGGGACCCTGAAAGACCTGGAGGCACGGGAGGAGGCCTTGTCCTGCGAGCTGGAATCCCTGAGGGCCGGGGAGAGGGCCAGGGAGATCGAAAATCGCCACCTTCAGGAGAAGCTGGCAGCCGCAGAGGGGAAGAACGTAGAACTAATGACCAAACTGGATGGGGTGTTGGATGAGAAGGGCCAGCAGGCGACTAGCTACTTTGACTCGGCACAGAAGATCCATGAGCTACTGGACAGACTGAAGGAGGCTGAGAGGGGGAAGATAGAGGCTCtggcagagggagaggataggaggagacaGGCCGACAGGCTGGCAGATGAGCTAAGGGTCAAAGAGGTGGCAGAAAAGAAGGATGAGGCCAAGCTCGAGTCGCTGTCAAAATCCATTGCAGAGGGGAACGCTAAGTTTGCGGATTGTGCAGAGGAGCAGCGTAATGCCATTGACAAGCTGAAGGGGGCATTGACTTTGAGAGAGAAGGAGGTCAACAACCTGCAGAGGCAGCTGCAGGACCTCCAGAGTGTtctggaagagatggagagacaagcAGAGGAGGCCAGAaacagagcagaggaggagaaagaggagatccAGGAAAGCATATGCAGTCTGAAAGAGGCCTTGGAGGTGGAACAACTCTACCTGAAGGAGCAGTTGAAGAGCAGAGAGGCGGAGCTGCTCTCCAGTATACAGAGGCTTCAGCACCTGGAGGTCCAGAGCCATAGCCTGACAACGGAGAGGGACATCCTGAGCGCCAACCTCTCCAAGCTGGAATCTAGCATCAGGGAGAAGGCCAATAAAATTGAAGAGTACAAGACTCAGTGCACCAACCTGATGGAGCTGAATGGGAAGTTGCTTGACACAGTGAAGAGGAAtgaggagctgaagaaggagcTGGCAGAGAGCCGGGCAGCCCTGGAGGGCGAGGTGGCTGCTCTCAGGGCGTCTGACAAGCACCTGAGGGGCCAGCTGGACGACGCCAAGGTAACAGTGGATGAGAAGGACAGGAAGTTGCGTGAGGAGAACCGGGCCTTGGACGAGAGTTTACAGAGGGCAGCCATGGCTGCTGCGGTCTCAGATGCCTCTACCAAACGGCTGGAGCAGGAGAACCAAGGCCTGAGGGAGGAGCAGGCTACGGTGAGGGCGGCGCTGAGCTCCATGCAGGAGGAACTGAAGTCCATCCACGGGCAGATTGGAGAGCTGGAGAAGAGCTTGGGGGCATCCCGCAGGAGCGAGGCCAGCCTGCAGGAGCAGCTCCAAGACCACAAGGCCCAGCTAGAGAACAAGGAGAAGGGCTGTGCAGAGCTCCAGGCCAGGGTGGAGGCCCTGGAGGCCAGAGGAAGGACACTGGAAAAGGCTAAGGCAGATGCAGAAAATGCCTGTGCCAAAAAGACAAAGCTGATAGAGAGGGTCACCACTGAGAAACAGACGGTGGAGAGAACACAGCTACAGAGAAGCTCTGCCCAGGCCAAGGAGAGCCAGGAGGTAGCCGCCAAGCTGACTATGGTGGAGGGCCAACTGGAAGTGAACATGAAGGAGGTGTCCAGGTTCCAGGCAGAAGTGATGGATTTGAGAGTGCAGCTGAAGACCTCTGGGGAGGACAGGATGAGGAGTCAGGCCCAGCTGGAGGTGATGGAGGCCCAGAAAGACGCACTCAGGACCCTAACAGAGCAGCTCAAAGCCCAGACAGAGGCACTTAACCAGAGGCACGTGGCCGAGCTCCTGCAGTGCAAAGAGAGGGAAGAGGCTCTGAGCAGGGAGTGTGACCAGGAGGCAGCCACCCGGTCCGAGTCGGCTGCCGCAGAGGCCTCCGCCAGGGAAGAGCTGGCCACGCTAAAGGCCCAAAATGAGAGGCTGGCCATGGAGAATGCTGAGATACGTGAAGGCCTCCACCGGGCCAATACAGAGATGGCAGAGCTTGGGATGACTATCTGTAGACTGACAGCAGAAAGGGAGGAGGCCAAGGAAGGCTGGGCGGGGGAGGCAGACAGGATAGGGGAACTGGAGGAGAGAACTTCCGGGGAGGTGGAGCGGCTGGAGGCCTGCATGGCTGCCATGCGCCAGGAGAACACCGGCCTAAGAGAGGAACTGAGGATGACAGAGAACCTTCCGGGAGCCATGCTGGAGCTGCAGGACAAGCTGGAGAAGGCAGAGGGCCAGGTGAGGAGCCTCCAGGACACCAGTCTGGAGGAGATGGAGGCGGTCAAGTTCCAGATGAGCTCCGAGAGCATGAATCATCAGAACCAGATCAAGAGTTTGAAAGATGAGCTGGGGAAACTGAGGGTCCAGTTGCCTAAAGAGCAGGAGAAGGTGTCCAGTCTGGAGACCAAAATCTTTGAGATAGAGGGGGTGAATGAGGAGTACTCACGGCTGATTGGAGAGAAGGATGCTCACGTCGCAAAGTCGGAAGCCGCTATTcgtcagagtgagggagagattcAGCGACTGAGAGACTCTGTCACCAGTGCCGAGGAGGCTCTCTTGGAGGTCCAGGCGGCACGTGAGGAGCTGAAGAAGAAATTGGAGCAGGCCGAGGTTGACAAGCATAGCCATTGCCTCAGGACGACAGCAGAGATCGACGACCTCTACCGAACCAAGAGCACCCTGGAGGAGCGCCTCATCGAACTAATCAAGGATAAGGACATTCTGTGGCAGAAGTCCGATGCTCTGGAGTTTGAGCAGAAGCTGCGGGCAGAGGAACGCTGGTTGCAGGACAAGGAGGCCACCCACTGCCTGGGCTGTCAGGGCCATTTCACCTGGTGGCTACGCCGACACCACTGCAGGCTGTGTGGACGCATCTTCTGCTACTACTGCAGTAACAACTTTGTGATGACCAAGCACAGTGGGAAAAAGGAGCGTTGCTGTAGGGAATGTTACACCCAACATAGAGCCGTGGTGGAGAGGTTCACAGAGGGTGAGCTGAGTCCCTCCGACACCCAGCTGCCTCCCCCCGTAATTGGGCCTCACTCACTCCCCAAACCAGCCCCCTACAAACCTACTCCCAGGGTTACAGTGTCGGACCCCAGCGCCAAGACTGATGACGGGGCCTATGACATCATCACAGAGGAGGATGCGAACGGTATCTATGACAGCGACTCGCTGTCCCTAACCACAGGGGATTCACTGGAGGGGGAGCAGGACACACGGCCACTGGGGGCGCTAGAAATAGGCACAGGAGACACGACCCCAGATGACCCAGAAGAGAATGTGCCCACTCTGCAGGACACAGAGATCGCCCTTCTCAAGTCTGGAGAAGTCACTCTGGTCGTCCCTGTCAGCATCGACGACATCTCTCAGTTTGGCGATGGCTCCCGGGAGCTTTTTGTCAAGTCCAGTTGCTACAGTGTGATCTCCATCGTCGTGGTCGATTGCAGCCCCACCGTGAGCTGGATGTTCTCCTCGGAGCCCAAGAGCATCTCGTTCGGCATGGTGTACCGCGTGACCGCCGATGTCCCTGTGGAACAATCCAAGGTGCTGATTCCTCTGACTCGCTGTAACTCCCACAAAGAGGCCATCCAAGGCCAGCTGAAAGTCAGGAACCCTGGTCTCTACACACTCATCTTTGACAACTCCTTCTCAAGGTTCATCTCCAAGAAAGTCCTCTACCACTTGACACTCGAGAAGCCGGTTATTTACGACGGAAGGGATTTTTAAGACTGATAGTGGACACTTACGCAGGTTAAATGTtataggggagggagagggtaCAGAGGGAGGACAATGTGTCCATTTCATTTTTACAGGTATTTAATTAGAAAGGATTCCATGTGCTTATTTTGTTCTGTGTTCCCCACCAAGTATTTTATGTTTAGTTTTGCTGTTTTATTCTGAATTGTTTTTTGTAGGAtccctatatatattttttaacactaGTGCTTTTATGTTTTGGAGTGTGTTAGTTATGTTTTAGTTAGAGCACAAACACCCTACAGACATAGCGGTTCGCTCTTAAGTCAAATGGTTTGACCTAATGGACTCCTCACTGAGATTCGGTGGTGAAATTCAAAAACAAAACCTAACCACAGCTAAGGGTTTAAAATGCTTACCTTGTAAGTACATGCCATGGTCTTGTTAAAGATGGAGAAGTGATTGCACACACTCCTTAAGATGACCACACATGTATACACATGTTATTAGTTCTGATTTTCTTTCTACCATGGACTAGCACAGTGTCCACAGGTGAGATGATTCTTCTTGAGCAACTGCATACATTTGAATCACACAATCAGTAGGGAACACTGTACATACAATAGAGCATCTGTTTCAAGCTCCAAAATCAACACGTTGTTAAGGAGAAGGCAGTTACGTTGGAGCATCCTCAAAATGCTGTGATGCTGAGGGAACAGAATGAAAGTGTGGGTCAACAGTCAGTAGTACAGGGGGATTGAAAGCTTTGCTACCAAATTCTTGTGTCAGGTGGGACTTTTGAAGCATACTGTTTGAGTGAATTGAACCTCTCTCTTCGACCCGTCGATAGCCTTTCCTGAAGTTAGTCCATATTTCATGTTTTCAGATGGAAGACTGCCATCGTCAATGTCATGTTGAAAGCACAAGGGGGCGGTGGGCTTTTATATCCCAAAGAGAAATCCATTTTCAAGTGGTTTTGTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472417 lncRNA downstream 15144 55167165 ~ 55167470 (-) True G416778
TU472416 lncRNA downstream 15929 55166453 ~ 55166685 (-) True G416777
TU472400 lncRNA downstream 34262 55148079 ~ 55148352 (-) True G416761
TU472377 lncRNA downstream 69413 55112757 ~ 55113201 (-) True G416744
TU472373 lncRNA downstream 78414 55103051 ~ 55104200 (-) True si:ch211-221n20.8
TU473108 lncRNA upstream 532 55237088 ~ 55237467 (-) True G417386
TU473082 lncRNA upstream 11678 55248234 ~ 55250837 (-) True LOC118964623
TU473077 lncRNA upstream 14984 55251540 ~ 55255098 (-) True G417357
TU473119 lncRNA upstream 40207 55276763 ~ 55279968 (-) True G417397
TU473125 lncRNA upstream 59147 55295703 ~ 55301442 (-) True G417401
XM_036977868.1 mRNA downstream 1156 55123617 ~ 55181458 (-) False LOC110524071
XM_036977869.1 mRNA downstream 1156 55123617 ~ 55181458 (-) False LOC110524071
XR_005051761.1 mRNA downstream 1156 55123617 ~ 55181458 (-) False LOC110524071
XM_036977865.1 mRNA downstream 60425 55102959 ~ 55122189 (-) False si:ch211-221n20.8
XM_036977866.1 mRNA downstream 60426 55102959 ~ 55122188 (-) False si:ch211-221n20.8
XR_005051764.1 mRNA upstream 11577 55248133 ~ 55249963 (-) False LOC118964623
XM_036977873.1 mRNA upstream 31890 55268446 ~ 55487036 (-) False LOC110522973
XM_036977872.1 mRNA upstream 31890 55268446 ~ 55487144 (-) False LOC110522973
XM_036977871.1 mRNA upstream 31890 55268446 ~ 55487289 (-) False LOC110522973
XM_036977870.1 mRNA upstream 31890 55268446 ~ 55487967 (-) False LOC110522973
TU472396 other downstream 22347 55141315 ~ 55160267 (-) True LOC110524071
TU471641 other downstream 796386 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 1176941 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1289708 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1563750 53617738 ~ 53618864 (-) True G415256
TU473281 other upstream 372279 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1472242 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1473724 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1597470 56834026 ~ 56834595 (-) True G418830
TU475541 other upstream 2374503 57611059 ~ 57611567 (-) True G419603

Expression Profile