RNA id: XM_021603387.2


Basic Information

Item Value
RNA id XM_021603387.2
length 1497
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110524073
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55237867 ~ 55239661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACACCTCAACGGTCCTCGTATCATTGTGCACATGGGAACGTGAGGCCATCAAGCTAAACTGAAAGAACAGACACAACAGCTTCCAACCTGACCATGGGATATTACGATACAAACATCACTTATGATGACAACTATATAGATGAGGTCTGTAACAAGGAAGATGTTGTCAAGTTTGGCTCCATCGCCACCCCTGCCTTCTTCTCTGTGGTGACCATCCTGAGTCTAGCGGGCAACATCCTGGTCCTGGCCATCCTGGCCAAGTACGAGAACCTCAAGTCTCTCACCAACATCTTCATTCTCAACTTGGCCCTATCTGACTTGGTGTTCACCTTTGGTCTGCCCTTCTGGGCAGCCTACCACATCTGGGGCTGGACCTTTGGCTGGTTCCTCTGCAAGACTGTGACCTTTGTCTTCTACGCAGGCTTCTACAGCAGCGTTTTGTTCCTGACCATCATGACGATCCACCGCTACCTGGCCGTGGTGCATCCTCTGTCCGACCACGGCTCCCGGAGGGGCTGCTACGGGGTCACCGTCTCTCTCATCATCTGGGCGATCAGTTTTGGTTTGGCCGTCCCCGCTTTGATTTTCAGCTCTGTCCAAGAGAATCCCCACGagggaaaaaaacatttgcaTTGTGAATACAGCGTTCCAATGTGGAGGAAAGTGAGCACATACCAACAGAACGTCTTCTTCTCGGCTGCTTTTGCAGTTATGGGTTTCTGCTACGTAAGAATATTGGAGGCAATCTTCAAGTCAAGGTCACACATGAGGAATCGAACCGTGAAACTGATCTTTAGTATCGTGGCAGTATTTTTCCTTGGCTGGGCACCTTACAACGTGGTTATATTTCTGAGGTTGTTGACCGACTACTCCGTAGCACCTTTCAACGATTGTGAGGTCAGCATGAAGCTCGACTATGGGTTCTACGTGTGTCGACTCATTGCTTTCTCCCACTGCTGTCTCAACCCTGTCTTCTACGCATTTGTTGGGATCAAGTTCAGAAATCACTTGAAGGTTATTCTGCAGAGACTTTGCAGTCACCGAAGCACCGTAGATTCACAACCGATGGAAGCGACTCATGTTCCCTCAAGGGGATCCATGTATTAGTCTGGCTCTTGAAGTTTCAGAGCACCATGGACTGAGCAGTCCAACCATGATCAATTGTAAAATGAACCTCTTTGctttttcaatacatttagaatgttactttttaatattttatttccaTTACTTATTATCATTGTCATTTTGTCTTGTTCTTTTCATTCTATTGTTAGTCCCACTATTGGTATTTTAACAAGGGTTAAAATACTTTGCCTGATGTATTTGTATAACGTATCAAAAGTACTTTTCAAATAGTTATTATTGATCTGAACCCTTTTTACAGTGTGTGTACTACAGTGGATATTAGGATAGATACAGAGGAGGACAAATTCCTAATTACGTCTTTAAATATGGGGATGTAGAGTAGatcaagtggtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04193 XCR1; XC chemokine receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472478 lncRNA upstream 19155 55217754 ~ 55218712 (+) True G416821
TU472445 lncRNA upstream 55241 55180492 ~ 55182626 (+) True G416791
TU472429 lncRNA upstream 58671 55178937 ~ 55179196 (+) True G416790
TU472428 lncRNA upstream 59042 55178558 ~ 55178825 (+) True G416789
TU472242 lncRNA upstream 164119 55072085 ~ 55073748 (+) True G416616
TU472500 lncRNA downstream 2837 55242498 ~ 55255101 (+) True LOC110524074
TU472484 lncRNA downstream 18034 55257695 ~ 55259455 (+) True LOC110524076
TU472480 lncRNA downstream 28791 55268452 ~ 55271810 (+) True G416823
TU472521 lncRNA downstream 35030 55274691 ~ 55317707 (+) False G416859
TU472522 lncRNA downstream 35030 55274691 ~ 55297316 (+) False G416859
XM_036977863.1 mRNA upstream 140610 55082899 ~ 55097257 (+) True LOC118964621
XM_021603379.2 mRNA upstream 196314 55032202 ~ 55041553 (+) False LOC110524067
XM_036977861.1 mRNA upstream 196314 55032202 ~ 55041553 (+) True LOC110524067
XM_021601325.2 mRNA upstream 280577 54955247 ~ 54957290 (+) True LOC110522873
XM_021603378.2 mRNA upstream 302673 54926333 ~ 54935194 (+) True LOC110524066
XM_021603388.2 mRNA downstream 10216 55249877 ~ 55255113 (+) False LOC110524074
XM_036977879.1 mRNA downstream 18013 55257674 ~ 55268360 (+) False LOC110524076
XM_021603389.2 mRNA downstream 18858 55258519 ~ 55268360 (+) False LOC110524076
XM_021603391.2 mRNA downstream 248159 55487820 ~ 55499695 (+) False LOC110524077
XM_021603392.2 mRNA downstream 248159 55487820 ~ 55499695 (+) False LOC110524077
TU471439 other upstream 624725 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 624725 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 887252 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 907387 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 908087 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 84984 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1378229 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1486524 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 1684263 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 1704177 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile