RNA id: XM_021603388.2


Basic Information

Item Value
RNA id XM_021603388.2
length 2684
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110524074
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55242498 ~ 55255113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACGTGATGTGGAATTATATAGACCTCACTTCCAGTTTCCACGCAGCACTTCAGTGAATCTAAAACATCAGACATGGATTACCCTCGACAAAATGGCTCCACACATAGGCTACTCGATCAACAACACTCCGGCTATGGTGACATCAAGGATTAATATCGGCGGATGAAAGAGATCGTTTCGATGCGGAGGCATCCGTCGATGGCATTAAGCAAATGCACTTTCACAATTTAAGATATATTTACGCACGGTCTAATCTATCAAATAACCGCGGAAATGATGGAAAAACTGAAACCAGAAGTTGGGCAGCTCAGTCCTATGGGCAAGGAATGCAAGTCTCCACATCACGACAGCATGACGACTTGCATAGCAGGTCGTGTAAGTGGGGAGGGGTGCGAGGCTGGTGGTGAGATACAGGAAGCGGCGTCGGCGAACTCCGCTGAGAGGGATCGTGTCCCGGGGGGGCGCTGCAACGGGACTATCCTCTTTAATGCAGTTACCAATGAAACGGCGTACCACAGCGAGCAAAAAAAGGAAGTGCCAGTGATCGAGTTGGCCAGAAAAGGAGGGCTCGTGGACATAAAAGCTAGGGAGCGGACGGCAGACGGCAATCACAGGATACAGACCACCGAGCTGTGCAGACCTCCTATTCAACTGCCACTGCCTTCCCGGGACCCGTTGTTGAGCGAAACTCGAATGGTGCAGTTGAGCCAACCTGGGTTCTCTCTACCTGCACGAGCGATGCTGTACAGTAACTTTGCTCAACCGCTCGCTACTATGAACAGTGGCTACAGTGGGGAGATGGAACATTATGGCATGTATCCCAGCCATCGGATAAAACGTCGACCAGCGCCCTATGAGATTGAAATCAACGATGGTAATGgcTCACAGCCCAAAATCGTGAGGCGGATATTCACCAACAGTCGTGAGCGCTGGCGCCAGCAGAATGTGAATGGTGCCTTCGCTGACCTCCGCCAGCTCATCCCCACCCACCCGCCAGACAAGAAGCTCTCCAAGAACGAGATCCTCCGACTGGCCATGAAGTACATAAACTTCCTGGCCAAGCTCCTGGACGACCAGGAAGGTGTGTTGGAGGCCGGCAACAGCGGTAGCATTGTGGGGGCGCGGACCCACGAGGCCCGAGGGGAGGGCCTGGTCCGGGAAGAGCTCCTCCAGGGAATGCTGTCGCCCAGCAACTCCAGTTGCGGGAGTCTTCTGGACGGGGACGGTAGTCCCGACAGCTACACCGATGACCAGGATTTGTCTATAGGGTCTCGAAGGCCCAACTCCAGAGACCTCCATCATCACTCTGGACTCCACATTGACGAAGAAAATCAGAGATGACTctacattttctttatggggaGAAGAACAGAGAATGTGAGATGGAGGAGCTTGGCAATTTTCTACCAACCTGGAGTGAATGGGCATCAATAGGATGGTTCCGATGGCGATACATTTCGTGCTGTGTACACATTTGATCTTTCTCTAATTCCTGTTTCCTGTCTGCCGTTGGCTTTTCCAGAGGTGGGTATGTTCTCTGGTGGAACATAAAGACTTTGTCCCAACTGCTGTTGTAAGCAGGTGATGGATTGGAAGTCATGACAGACCTAAAATGTAACTCTGAACATAATATCGAAAAACAATTAAGGGAATTTCCAAAAACAGCATGAATCTCATAATGGTACCTTTTCTTGCCTGAGATCAAAGTTTGTTTAGGTACAGTGTTTGACTCTTTCAACGACAATGAGAATTTTGTTCTTAAGTACTATGGACTGTACTAAATTTAAGTGATTTGTTTTCATCTTAGAGCCCTCTAATGTCAGTTATTTTGTTCTTTTAGTAACTCAAATTTGGAGTTATCAAATAATAGTATTTCGACCTGATTTCCAGTAACATTTTTCTTGAACACCACGTCATAAGTTGTTGGATAACACAGTTTATCCCCAAACACACAGTTTTGCAGTGAGATAACTGATAATTGTTTTTAAAAAGTGGGAGATCTGTGTTGCTGTCAATGTTAATGTTGGGAGAACAACAAAAGTTTGAAAGTGTACTTGTTAATGTGATATTCACATAAACCATATGGTTACAATATTTACCATACACATTTTATTGAGGTCAAATTGTTGCCATTTTTGGATGGAATAATATGGATAGCATGTTAGTATGACATGCACATGACACAGacgcgcaccacacacacaccacacacacacacaaagggcatGATGCCTGTCCAATAATAGAACAAAATAACATCTCTGTATCTTGCAACGTAAGAGGTACAAATGTACATAAAAACAGACCTGTACATTTGTATTGAACAATGAAACGTGTCATTTTTTTGCACTGCTTCTTTCATTGTGACCATGGTACATTGAGTTGATAATGTTTTCACATTCACTTCTTAAATTTCTCTTTTATTCATAACATTAATCAAGTGTTTTACCACTGTATTGGACATTATGTACGTCTGCTATTTCAGCAGACTATTGAGTAACCAGAAATGGTACCTTTACGTCTTCGATGTGTTAAACAAAAAAAGGGATATTCTTTTTTACGTGATATTTAGTAAGAAAAAAACTGTTGCTGTTAAGGTGATTATGGAGACATCTATAAATATATTCAATGTTATATCTCAAATTTTATATACCACAAAAtaaaaatgaggggaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472478 lncRNA upstream 31165 55217754 ~ 55218712 (+) True G416821
TU472445 lncRNA upstream 67251 55180492 ~ 55182626 (+) True G416791
TU472429 lncRNA upstream 70681 55178937 ~ 55179196 (+) True G416790
TU472428 lncRNA upstream 71052 55178558 ~ 55178825 (+) True G416789
TU472242 lncRNA upstream 176129 55072085 ~ 55073748 (+) True G416616
TU472484 lncRNA downstream 2582 55257695 ~ 55259455 (+) True LOC110524076
TU472480 lncRNA downstream 13339 55268452 ~ 55271810 (+) True G416823
TU472521 lncRNA downstream 19578 55274691 ~ 55317707 (+) False G416859
TU472522 lncRNA downstream 19578 55274691 ~ 55297316 (+) False G416859
TU472523 lncRNA downstream 19578 55274691 ~ 55277041 (+) True G416859
XM_021603387.2 mRNA upstream 10216 55237867 ~ 55239661 (+) True LOC110524073
XM_036977863.1 mRNA upstream 152620 55082899 ~ 55097257 (+) True LOC118964621
XM_021603379.2 mRNA upstream 208324 55032202 ~ 55041553 (+) False LOC110524067
XM_036977861.1 mRNA upstream 208324 55032202 ~ 55041553 (+) True LOC110524067
XM_021601325.2 mRNA upstream 292587 54955247 ~ 54957290 (+) True LOC110522873
XM_036977879.1 mRNA downstream 2561 55257674 ~ 55268360 (+) False LOC110524076
XM_021603389.2 mRNA downstream 3406 55258519 ~ 55268360 (+) False LOC110524076
XM_021603391.2 mRNA downstream 232707 55487820 ~ 55499695 (+) False LOC110524077
XM_021603392.2 mRNA downstream 232707 55487820 ~ 55499695 (+) False LOC110524077
XM_021603394.2 mRNA downstream 232707 55487820 ~ 55499695 (+) False LOC110524077
TU471439 other upstream 636735 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 636735 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 899262 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 919397 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 920097 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 69532 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1362777 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1471072 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 1668811 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 1688725 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile