RNA id: TCONS_00031053


Basic Information

Item Value
RNA id TCONS_00031053
length 713
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_015534
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30489846 ~ 30526721 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCGGCCCGGTAGGATTCCAACCCTATCATCGGCCTATGAAATTTCCTCTAAGGATTGTCTTGCTGATATTGTTCATGTGTGTGACGCTACTTTTGGCCAGTTTAGTGTGTCTTACGTTACCAGTATTTACAGGACGCTGGCTGATGTCCTTCTGGACGGGCAGTGCTAAGATCCACGAGCTGTACACTGCAGCATGTGGCCTCTATGTGTGCTGGCTCTCCATCAGAGCGATCACCGTACTGCTGGCCTGGATGCCTCAGGGTCGCAGAGTCATCCTGCTCAAGATTCAGGAGTGGACCCTCATGCTTCAAGACAGCTCGTGTTTGAAGAATggagtcacatgcattgctcagATTATGAAGACCCTGATTGTGGCTGTGCTGTTGGCTGGAGTGATTCCTCTGCTCTTGGGACTGCTGTTTGAGCTGGTGATTGTAGCTCCTCTCAGAGTGCCGCTGGATCAGACTCCTTTGTTCTACCCCTGGCAGGACTGGGCTTTAGGAGTGCTTCATGCCAAAATCATTGCTGCCATCACCCTCATGGGTCCCCAGTGGTGGCTGAAGACCGTTATTGAGCAGGTGTATGCCAATGGAATCCGGAACATTGACCTTCATTTCATCATCAGGAAGCTAGCGGCTCCGGTCATTGCTGTATTGCTGCTGTCTCTCTGCATCCCTTATGTGATTGCTGTGGGCATCGTGCCCCTGCTTG

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070912-530 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

Ensembl:

ensembl_id ENSDART00000137048

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033554 lncRNA upstream 179374 30329405 ~ 30334513 (+) True XLOC_015527
TCONS_00031040 lncRNA upstream 233383 30277334 ~ 30280504 (+) True XLOC_015525
TCONS_00033268 lncRNA upstream 316146 30197370 ~ 30197741 (+) True XLOC_015521
TCONS_00031031 lncRNA upstream 386951 30126414 ~ 30126936 (+) True XLOC_015518
TCONS_00033553 lncRNA upstream 423898 30072679 ~ 30089989 (+) True XLOC_015516
TCONS_00031057 lncRNA downstream 201026 30721071 ~ 30724156 (+) False XLOC_015536
TCONS_00031065 lncRNA downstream 288284 30808329 ~ 30822212 (+) True XLOC_015538
TCONS_00031074 lncRNA downstream 435735 30955780 ~ 30958848 (+) True XLOC_015542
TCONS_00033270 lncRNA downstream 555531 31075576 ~ 31084080 (+) True XLOC_015544
TCONS_00031077 lncRNA downstream 580399 31100444 ~ 31132662 (+) False XLOC_015545
TCONS_00031049 mRNA upstream 30678 30480907 ~ 30483209 (+) False XLOC_015533
TCONS_00031051 mRNA upstream 30682 30481125 ~ 30483205 (+) True XLOC_015533
TCONS_00031050 mRNA upstream 30782 30480929 ~ 30483105 (+) False XLOC_015533
TCONS_00031047 mRNA upstream 33432 30464829 ~ 30480455 (+) False XLOC_015532
TCONS_00031048 mRNA upstream 33432 30465102 ~ 30480455 (+) True XLOC_015532
TCONS_00031054 mRNA downstream 11681 30531726 ~ 30548216 (+) False XLOC_015535
TCONS_00031055 mRNA downstream 26973 30547018 ~ 30548220 (+) True XLOC_015535
TCONS_00031056 mRNA downstream 201025 30721070 ~ 30726420 (+) False XLOC_015536
TCONS_00031058 mRNA downstream 201421 30721466 ~ 30724754 (+) True XLOC_015536
TCONS_00031059 mRNA downstream 219635 30739680 ~ 30748010 (+) False XLOC_015537
TCONS_00031039 other upstream 236825 30276217 ~ 30277062 (+) True XLOC_015524
TCONS_00031038 other upstream 243724 30269306 ~ 30270163 (+) True XLOC_015523
TCONS_00031016 other upstream 649547 29846392 ~ 29864340 (+) False XLOC_015512
TCONS_00030997 other upstream 2655053 27857688 ~ 27858834 (+) True XLOC_015497
TCONS_00030985 other upstream 3112970 27394840 ~ 27400917 (+) False XLOC_015492
TCONS_00031062 other downstream 266738 30786783 ~ 30832975 (+) False XLOC_015538
TCONS_00031070 other downstream 396143 30916188 ~ 30921476 (+) False XLOC_015542
TCONS_00031072 other downstream 396155 30916200 ~ 30926304 (+) False XLOC_015542
TCONS_00031078 other downstream 581043 31101088 ~ 31101573 (+) True XLOC_015546
TCONS_00031079 other downstream 587884 31107929 ~ 31108414 (+) True XLOC_015547

Expression Profile

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