RNA id: XM_036977886.1


Basic Information

Item Value
RNA id XM_036977886.1
length 2999
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110524078
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55546163 ~ 55726193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAATTTGCGTTAAACATCATATAAGAACATTTATTTAGCAGTGTTGGTGTGGCAGTTTTGCGCGAGCCCTGCTCTTGATTGAAATTGATAGGTTTGCGTTGTTTGAAAAGCCATTTCATTCCGGGGCTAATGGGTTCAAGTAGACAGGATAAGGCAGCCTATAATTtgaaaatgtaaatatatatatatatgatatatttcTGTCCTACATGTTCATTGCATTTATGTTGGTCTTATTACTTCACTTAAACCGTGTATACTTTGGGAGCTATGCTGAGAGGGGAGTACAAGAGTTTGTCCTTCAGGCACTGTGGACAAAAGTGAACTGTATGTATCTGTATGGAACTCGGTGCAGGCGGTTGTGGCTCCTGTCGCCGTAGACAGGACAGACGCAACACGGATTCACTTTATCGTCTGCTGTTAGAGATAATTTTCTAAACGGAAACCAGCTGTCGGGCTTCAGCGACAAGCAATTGTTTGGGTGTTCTGGGATATTATCACCTTCATTAACTACCGCACCCTCCTTGTTCGTAAATCCGACAGACTCATTTCGGAGTTCGCTCCACcgtgaagccagccgcaccacaTGCCTTCAATGCTTTCGGTTGTTGCGAGCTTTGTTTTGTCTCTTCGAGAAACCGGAGTGAATGGGAGAACTCATATCGAGTTCAGAAGAACGAACGTCTGACAATCAGCATTTTTTTGTAATGGTATTAGTATGAGAACAAGATTAGCACTGTCCGAAGATGACTTATTTTCTTCCTATTTCCCGTGATTTTTAACCTCTCCGCTGCAGCCAGTCTGCCTTTGGACTTTTCTTTTATTGTTGAATATGCCTCTGGTGAAAGTTTTGGGTTATCCAACGAAGAGACTGCTCTACGGCTTTTACTGCACTGTACAATAGATGCGTGCGGAAAGTGGAAGCAGTGTAACTCGAGGCGGGGTTAAAGTTCAGCTCTATGGGGTGGTGAAGCCTTGGTTGCAGTTCGCAGAGTTGGAAATGTGAAAGCAAGAAGCAGGCTttatttttccctctctctcccttctgtctctccttttTTTCCCTTTCTTTTCAAAACACGGACACAGCCATCACGGACACAGCCATCACGCATACACGGGCAAACacggacacacacccacacataattcacacatacacacacactcactcacacaccatcacacacataaACACGCAGACCCGTTCGTgtaactcaaacacacacacatacatacaccctCCACATCCAAGATTAGATACAACAGATATGTATTCTCCGCTATGCCTAACACAGGATGAATTCCATCCTTTCATCGAAGCTCTGCTGCCCCACGTGCGAGCGTTTGCCTACACATGGTTCAACCTGCAGGCCCGCAAGAGAAAGTACTTCAAGAAGCACGAGAAGCGCATGTCTAAGGAAGAGGAGCGCGCGGTGAAGGACGAGCTGCTCAGCGAGAAGCCCGAGGTCAAGCAGAAGTGGGCATCGCGCCTTCTGGCCAAGCTCCGCAAGGACATCCGGCCTGAGTTCCGGGAGGATTTTGTGCTCACCGTCACCGGGAAGAAGCCCCCGTGCTGCGTGCTGTCCAACCCTGACCAGAAGGGTAAGATGAGGAGGATCGACTGCCTGCGTCAGGCAGACAAAGTCTGGAGGTTGGACCTGGTCATGGTCATTTTATTCAAAGGTATTCCCCTCGAAAGTACTGATGGCGAAAGGCTGGTAAAGTCCCCACAGTGCTCGAACCCAGGGCTGTGTGTGCAGCCTCATCACATTGGAGTTTCTGTGAAGGAGCTCGACCTCTACTTGGCCTACTTTGTGCACGCAGatggcCAGTCAGACAGTCCCAACCAGCAGAGTGAGTCTGACATCAAGGACCAGCCTGAGAACGGACATCTTGGCTTCCAGGACAGCTTCGTCACATCGGGGGTCTTCAGTGTTGCTGAACTCGTGCGAGTCTCACAGAccccaatCGCAGCGGGGACGGGTCCTAACTTCTCGCTGGCGGACTTGGACAGCTCCTCCTACTACAGCATGAGCCCCGGGGCCATGAGGCGACCCTTACCAAGCACCTCCTCCAGCagCTCGGCCAAGAGGATCAAGTGTATGGAGGATGAGGTGGACAGTCCAGGAGAGGAGTCCTACTACCCGGGCCAGGGCCGCTCCCCGGGCAGCGGCAGCCAGGCCAGCAGCTGGCACGAAGTGGAACCAGGTACGTACTGCTCTGGATATAAACTGCGTGGCTCGCTAGCTAGTTCGTTCATCTCAAGACAAGCGAGTCCCCACGCCACGCCGTCGAGCCTCCACTTCCCCACGTCGCCCATCATCCAGCAGCCCGGCTCCTACTTCTCCCACCCGGCCATCCGTTACCACCCCCAGGAGAGCCTCAAGGAGTTTGTCCAACTTGTCTGCCCCGACTCTGGCCAGCAGGGAGGACAGGTGGGCTTCCTTAACAAGTATGCAGAAATACCATGGGGGAAATACTGTACAAGTGGTCGAAGAGAGAGCACTgcagtggagcccAACGGAAGCAGTCAGGGGAAGGTCCACAACCCATTCCTGCCCACCCCCATGCTGCCCCCTCCACCCCCGCCCCCTATGGCGCGGCCCGTACCCCTGCCTGTGCCAGACTCCAAACCACCATCCACCTCCACCGAGGGAGGGGGCAACTCCCCCACCTCGCCAACCTACTCcacaccgagcacgtccccagcCCAGCGCTTCGTCAGTGTGGGCCCCCGAGACCCCAGCTTTGTAAATATCCCTCAGCAGCCCCAGTGGTACCTGGGATAAGGACTCCAGACCCCCTCGCCGCCCGCTGGACAGATCGCTGGACCCCTACTTTCTCCCCTGAGTGCGACCCGACCTGAACCGACCAACACCCCGCAAACGTGCCCACGTCTGACAGAGAGAAgcccaacacccccccccccccccccccaatctgtCACCGTCTCCTCATCCCCAGCGCCTGAGAGACTAGAGCATCAGCATGGct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473237 lncRNA downstream 24719 55525668 ~ 55525908 (-) True G417487
TU473193 lncRNA downstream 51003 55498082 ~ 55499624 (-) True G417465
TU473080 lncRNA downstream 60787 55487954 ~ 55489840 (-) True LOC110522973
TU473171 lncRNA downstream 108669 55438129 ~ 55441958 (-) False G417445
TU473337 lncRNA upstream 49148 55733816 ~ 55735222 (-) True G417583
TU473338 lncRNA upstream 50606 55735274 ~ 55738366 (-) True G417584
TU473343 lncRNA upstream 64031 55748699 ~ 55748913 (-) True G417589
TU473352 lncRNA upstream 83974 55768642 ~ 55769071 (-) True G417598
TU473354 lncRNA upstream 86241 55770909 ~ 55771508 (-) True G417600
XM_036977870.1 mRNA downstream 62660 55268446 ~ 55487967 (-) False LOC110522973
XM_021603403.2 mRNA upstream 186532 55871200 ~ 55875392 (-) True nphs2
XM_021603408.2 mRNA upstream 420934 56105602 ~ 56136576 (-) True LOC110524086
XR_005051586.1 mRNA upstream 527070 56211738 ~ 56214599 (-) True LOC118964529
XM_021603412.2 mRNA upstream 556063 56240731 ~ 56383335 (-) True LOC110524088
XM_021603413.2 mRNA upstream 771447 56456115 ~ 56459513 (-) True LOC110524089
TU472396 other downstream 390360 55141315 ~ 55160267 (-) True LOC110524071
TU471641 other downstream 1164399 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 1544954 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1657721 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1931763 53617738 ~ 53618864 (-) True G415256
TU474559 other upstream 1024130 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1025612 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1149358 56834026 ~ 56834595 (-) True G418830
TU475541 other upstream 1926391 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 1935386 57620054 ~ 57626174 (-) True LOC110524128

Expression Profile