RNA id: XM_036977903.1


Basic Information

Item Value
RNA id XM_036977903.1
length 3843
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110524085
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55932977 ~ 56105281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTGAATCACTTTCAAATGTGGACTTTTATTTTTAAGGCAAATCGCTAATTCTTATCGTAGCTAGCGTCACACAGGTGTGTGCCTCACAGTGCTTGTCTTGCTGCTGCAACTTGACAGCTACTCCTCCGGAGGCGGTCACTCTAAACAAGGCTGCAGCAGCAGGAGGCTGAGCAGAAGGGCACTGTGAGGTGAAGCAGCGGACAGAGGGGCAGAGCGCTGGCCCCTGGGGCTTCTGGCTAACCATGGACGACACCTCCTCTCTGGGCAAAGTGAGCGGCTCCACCGAATCCGTGGCCACTGTCACCAGCGAGGAGTTTGTGCTGGTGCAGCCGTCCGCCGGAGGATCCCCCTCGGGCTCAGAGGGCAAGCCCAGACTCAAGATGTCCTGCAATGGGAACGAACAGCTGGAGAGAGCCATGGAGGAGGTGCTGGATGACGACGTGGTGAAAGAGGAGATTAGTGGAGGAGCAGTagcagaggagagaacagaggctTTTCAGGAGTCATTGACCTCCATAGCCCCCGGTCCACAGACACGACCCCAGGGCTTTGCGCTGGACCCAACACCTGCAGTGGAGTCAGTGTGTCCTCCCGCAGGGCAGGGCAGTCCTCCAGTCCAGGAGGAGGACAGTGTTCAGTTCAGTAAGCTGTCCTACCTGGGCTGTACGTGGGTGAAGGCCCCTCGCAGTGAGCCCGAGGCCCTGAGAGCCATGACCACGCTGCGGGCAGAGAGTGCCATCCCAATTCCCATCACCCTCCATGTGCCCAATGTACCCGAGGGCTGCGTCAGGATCGTGGACCAGGCATCGGGCACGGAGATCGCTTCTTTCCCCATCTACAAGGTGCTGTTCTGCTCCCGGGGTCGCGAGGGCTCCATCGAGAGCGACTGCTTCTCCTTCACTGAGAGCTACCGTAGCTCTGAGGATTTTCAGATCCACGTCTTCTCCTGCCATATCAAGGAAGCTGTGAGCCGGATCCTGTACAGTTTCTCCACAGCGTTCCGCCGCTCCTCCAAGCCAGCCCCTGACGTGAGGGACTCGGCCCTGCCCCTCTCCCCCGACAGTGACCTCTTCAGCTTCACAGTCTCACTGGAGGTGCGGGAGGACGACAGCAAGGGAAACTATAGcccagTTCCCAAGGACCGGGACAAGTTCTACTTCAAGCTGCGGCAGGGAGTGCAGAAGAAGGTGGTGGTCATGGTCCAGCAGATGAGCAACCAAGAGCTGGGCATTGAGAGGTGTTTTGGGATGTTGTTGAGCCCAGGGCAGAAGGTTCGGAACAGTGACATGCATCTTCTAGACATGGAGTCCATGGGGAAGAGCTCGGATGGAAAGTCGTATGTGATCACGGGCACATGGAACCCCAACATGGCTGCCTTCCAGGTGCTGAATGAAGACACACCTAAAGATAAGCAGGTGTACATGACCGTCGCGGTGGACCTGGTGGTGACTGAGGTGGTGGAGCCGGTGCGCTTCCTGCTGGAAACCCTGGTGCGCGTCTACCCGGCCAATGAGCGCTTCTGGTACTTTAGCCGCAAGGCCTTTAGCGAGACCTTCTACCTCAAACTCAAACAGggtggTGGGAAGGGTGGCCAGGGTGATGCCATGTTGGAGGTGGTGAGCCtgcagagggagactgagaggagCAACGGGGGACGAGGCCGTCTGGCCTCTCCGGCTGAGGAAGAGGAGCCTGAGGAAGATAGTGACAGCGAGATCTCCAGTGGGACCGGTGATGTGTCCAAAGACTGCCCTGAGAAGATTCTGGAGTCCTGGGGTGGAATCCTCAACAGATGgCATGGGAACCTGTCTGTGCGGCCTAAGGGCCTGACGGCGCTGGTGAAGCCTGGGGTCCCTGAGGCCCTCAGGGCTGAGGTCTGGCAGCTCCTCTCAGGCTGCCAAAGTGACCAGGACCTGCTTGATAAATACCGCATCCTCATCACCAAGGACTCTGCCCAGGACGGAGTAATCACCAGAGACATCCACCGGACGTTCCCCGCTCACGACTACTTCAAAGACACTGATGGAGACGGGCAGGATTCCCTTTACAAGATCTGTAAGGCCTATTCAGTCTACGATGAGGAGATTGGCTACTGTCAGGGACAGTCCTTCCTGGCTGCTGTACTACTACTGCATATGCCTGAGGAGCAGGCATTCTGTGTGCTGGTGAAGATCATGTATGAGTACGGCCTGAGGGAGCTCTACAAGAAGAACTTTGAGGACCTGCACTGCAAGTTCTACCAGCTAGAACGACTGCTTCAGGAGCAGCTCCCAGACCTGTGGTCCCACTTCCAGGAGCTGAGCCTGGAGGCCCACATGTATGCGTCTCAGTGGTTCCTCACACTCTTCACCGCCAAGTTCCCCCTCTGCATGGTCTTCCACATCACCGACCTGCTACTGTGTGAGGGCCTGAACATCATCTTCAACGTGGCGCTGGCTCTTCTCAAGACGTCTAAGGAAGACTTGCTCCAGGCTGATTTCGAGGGAGCACTGAAGTTCTTCAGGGTCCAGCTGCCGAAGCGCTACCGGGCTGCGGAGAACGCTCGCAGGCTCATGGAACAGGCCTGTAGCATCAAGGTGCCCACCAAGAAGCTGAAGAAGTTTGAGAAGGAGTACCAGACCCTGAGAGACAGCCAGCTGCAGCAGGAGGACCCCGTCGACCGCTACCAGtctcgGCTCAGGTCTGTGTAGAACACTGCGCTGATCGTGGCAGACTACGCGAGGTGTACCCAGACTCAGTGGAGAGAGACTTTTGTTATGAGTGGAGGCCATAGACTTGTCCTGGTCAAAGATGAGGAAAAGAAAAGATATGTCTCAGGGCTTTCCTCTGTTCATAAGGCCGATTCTGAGTAACGAAACCGAATCGCCTGCGAACCTCGTCTAGTTGTAAAGTGAATGTGTGAATGAAACTGACGTCTCATTGTTTGTCAGAACAACCTGTAGAGTTGTGTCCATGTGGGATTAATTTTAGTATTactgttcatgtgagagagaaaaaaaacggaCATTGAAGTTATAATTAGGCCGTGGCTGTTACAACCGGGCTTGGATGTGTTTTTGACCaggctaatgttttgtacatgtgCTGTGTAAAACCCCGTACCCCCAATGGCCTGCTGCCCTGGACAATTCGAATGGGCCAACGTCACAAAGTTTGTCACAAGGGCTGAATGTGACAGATACATGACAATTATAGGCATATCTGTTTTATTTGTGCTTTTtttgttttcattattatttCACGTTTTTAGTACTTCATGTGTGCTTTTTGAGTGTTATTCTTCACCATTTAAAGAtgtatttattgaaccttttattTATACAGATTTGTCTAATTGACATAAGAATCTATTTTGAAAGAGAGACCTGTTCATATATTTTGAGTGTGTGAACCGATGGGCTTGCCCTGTAGTTGTCATGTCTCTGTCATGTAGGCTAGATTCCGTTTCACCTCTCCTTCAGCCCCTTATTCATATTATTCACCAACTCTGCGACGTTCACCCCGTACGAAAGAACAGCAGGGCCTTTCGGCAAGGGGTTTGTGTAGCACAAATGCAGAAAGTTACGCCGCCATTACAGTTATTACTGACAAACGTTTGAAACGTTTTCAAGTTCATTGTTGTTTGGGACCATATTCCTGAGTGCTTTTTAATTTTTCAGAAGTTTTTATATATTGTATTCTTTTTTAACGATACCTTACAGTTGAATTTTGTTGTACCTACTGCAAGACTCACGTTGTGTTTACGTTCATGCTATTCTGAATGTGATGCCTAAAGCACAGAGTTTTTATTTGTTCTGACCCGACACAAAATACAATAAAGTTTATTTTGTAAAGAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472827 lncRNA upstream 84905 55838512 ~ 55848072 (+) True LOC110524081
TU472855 lncRNA upstream 149310 55783176 ~ 55783667 (+) True G417151
TU472851 lncRNA upstream 157753 55775015 ~ 55775224 (+) True G417147
TU472849 lncRNA upstream 162244 55770500 ~ 55770733 (+) True G417145
TU472848 lncRNA upstream 163072 55769676 ~ 55769905 (+) True G417144
TU473633 lncRNA downstream 106309 56204944 ~ 56205176 (+) True G417864
TU473645 lncRNA downstream 120146 56218781 ~ 56219103 (+) True G417876
TU473652 lncRNA downstream 128230 56226865 ~ 56243791 (+) True G417883
TU473651 lncRNA downstream 142180 56240815 ~ 56243410 (+) True G417882
TU473737 lncRNA downstream 311535 56410170 ~ 56410401 (+) True G417968
XM_036977898.1 mRNA upstream 11922 55884879 ~ 55921055 (+) False LOC110524084
XM_021603418.2 mRNA downstream 406909 56505544 ~ 56525588 (+) False LOC110524091
XM_021603420.2 mRNA downstream 406909 56505544 ~ 56525588 (+) False LOC110524091
XM_021603419.2 mRNA downstream 407130 56505765 ~ 56525588 (+) False LOC110524091
XM_021603421.2 mRNA downstream 407130 56505765 ~ 56525588 (+) False LOC110524091
XM_036977911.1 mRNA downstream 407945 56506580 ~ 56525588 (+) False LOC110524091
TU472519 other upstream 607706 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 1319835 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 1319835 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 1582362 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 1602497 54330080 ~ 54330480 (+) True G415809
TU473866 other downstream 519255 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 627550 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 825289 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 845203 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 1266729 57365364 ~ 57367337 (+) True LOC110524119

Expression Profile